Wall clock time and date at job start Wed Apr 1 2020 05:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.50701 * 109.46837 * 270.21259 * 7 6 5 9 9 O 1.21284 * 120.00148 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99970 * 0.02562 * 10 8 7 12 12 C 1.46496 * 120.00199 * 179.97438 * 10 8 7 13 13 C 1.53008 * 109.46987 * 90.00478 * 12 10 8 14 14 N 1.46899 * 109.47233 * 180.02562 * 13 12 10 15 15 C 1.46898 * 111.00020 * 66.04729 * 14 13 12 16 16 C 1.46901 * 110.99658 * 190.00396 * 14 13 12 17 17 C 1.50702 * 109.46834 * 170.00130 * 16 14 13 18 18 O 1.21295 * 120.00109 * 359.97438 * 17 16 14 19 19 N 1.34776 * 120.00285 * 180.02562 * 17 16 14 20 20 C 1.37095 * 120.00651 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99419 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00347 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00003 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99865 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47091 * 60.00213 * 24 22 20 26 26 H 1.48503 * 109.47000 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47192 * 299.99855 * 24 22 20 28 28 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 30 30 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 31 31 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 32 32 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 34 34 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 35 35 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 36 36 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 37 37 H 1.08996 * 109.47313 * 89.99158 * 11 10 8 38 38 H 1.09001 * 109.46812 * 209.99763 * 11 10 8 39 39 H 1.09002 * 109.46459 * 329.99038 * 11 10 8 40 40 H 1.08997 * 109.47534 * 210.00678 * 12 10 8 41 41 H 1.08996 * 109.47366 * 330.00761 * 12 10 8 42 42 H 1.08997 * 109.47147 * 300.00437 * 13 12 10 43 43 H 1.09004 * 109.47000 * 60.00245 * 13 12 10 44 44 H 1.08996 * 109.47402 * 60.00106 * 15 14 13 45 45 H 1.08999 * 109.46590 * 180.02562 * 15 14 13 46 46 H 1.08997 * 109.47210 * 299.99787 * 15 14 13 47 47 H 1.08997 * 109.47250 * 289.99381 * 16 14 13 48 48 H 1.08996 * 109.47334 * 50.00107 * 16 14 13 49 49 H 0.96999 * 119.99500 * 359.97438 * 19 17 16 50 50 H 0.96996 * 120.00352 * 180.02562 * 23 22 20 51 51 H 1.08001 * 119.99700 * 359.96970 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5852 -2.9371 -1.4214 9 8 4.1916 -2.2543 -2.3432 10 7 5.2482 -4.0844 -1.6677 11 6 5.7241 -4.9090 -0.5542 12 6 5.4918 -4.5075 -3.0489 13 6 6.8257 -3.9331 -3.5305 14 7 7.0698 -4.3569 -4.9157 15 6 6.0838 -3.7640 -5.8291 16 6 8.4392 -4.0276 -5.3333 17 6 8.7333 -4.6875 -6.6559 18 8 7.8858 -5.3658 -7.1970 19 7 9.9385 -4.5250 -7.2369 20 6 10.2063 -5.1257 -8.4397 21 1 9.4517 -5.7296 -8.9215 22 6 11.4487 -4.9576 -9.0390 23 7 12.3667 -4.2223 -8.4529 24 14 11.8137 -5.7768 -10.6776 25 1 10.8534 -5.2888 -11.6998 26 1 13.1977 -5.4433 -11.1002 27 1 11.6802 -7.2489 -10.5357 28 6 2.1981 -1.1970 -0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 0.0010 34 1 5.3517 -0.0001 -0.0091 35 1 5.2866 -2.3718 0.5133 36 1 3.7450 -3.2618 0.5132 37 1 4.9523 -5.6275 -0.2783 38 1 6.6256 -5.4421 -0.8564 39 1 5.9487 -4.2707 0.3003 40 1 5.5273 -5.5960 -3.0947 41 1 4.6875 -4.1431 -3.6879 42 1 6.7902 -2.8447 -3.4848 43 1 7.6301 -4.2976 -2.8916 44 1 6.1499 -2.6772 -5.7794 45 1 6.2875 -4.0945 -6.8476 46 1 5.0824 -4.0808 -5.5381 47 1 8.5376 -2.9470 -5.4368 48 1 9.1440 -4.3866 -4.5834 49 1 10.6164 -3.9828 -6.8039 50 1 13.2338 -4.1047 -8.8714 51 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715531717.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:58 Heat of formation + Delta-G solvation = -61.604134 kcal Electronic energy + Delta-G solvation = -29568.766758 eV Core-core repulsion = 25467.248622 eV Total energy + Delta-G solvation = -4101.518136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.27065 -40.40627 -39.90588 -38.11545 -36.45176 -35.82049 -34.46964 -33.28842 -32.96296 -31.30485 -29.34247 -28.65495 -27.70562 -27.63019 -26.80865 -25.30813 -23.14564 -22.58898 -21.64473 -21.01272 -20.01707 -19.82915 -18.14808 -17.87253 -17.57246 -17.19605 -16.87592 -16.58302 -16.52804 -16.15236 -15.97977 -15.67560 -15.53960 -15.17970 -15.04354 -14.62423 -14.28014 -14.14915 -14.08911 -13.92139 -13.79765 -13.77091 -13.45272 -13.29387 -13.21538 -13.03982 -12.94618 -12.75726 -12.71669 -12.61372 -12.55879 -12.42014 -12.12262 -11.95435 -11.86741 -11.81371 -11.45666 -10.93007 -10.34110 -10.00404 -9.69921 -9.68600 -9.47720 -9.30931 -8.46003 -5.94807 0.41472 0.50492 1.40004 1.41695 1.52689 1.62025 1.95072 2.04746 2.29745 2.78481 2.91307 3.20340 3.39802 3.64504 3.77085 3.89267 3.97156 4.05801 4.11507 4.21597 4.23692 4.32115 4.33199 4.40563 4.45565 4.48047 4.49411 4.56490 4.59601 4.60655 4.63286 4.75400 4.79047 4.81145 4.82906 4.92348 4.98292 5.01706 5.14275 5.19422 5.30303 5.41115 5.47310 5.56799 5.65246 5.70672 5.82150 6.01420 6.12092 6.14153 6.40970 6.60803 7.13033 7.18690 7.56093 8.12017 8.71193 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020692 B = 0.001664 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.876258 B =16827.113858 C =17172.622668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.135 4.135 4 C -0.127 4.127 5 C -0.130 4.130 6 C -0.076 4.076 7 C -0.092 4.092 8 C 0.507 3.493 9 O -0.581 6.581 10 N -0.614 5.614 11 C 0.067 3.933 12 C 0.124 3.876 13 C 0.051 3.949 14 N -0.528 5.528 15 C 0.031 3.969 16 C 0.058 3.942 17 C 0.442 3.558 18 O -0.613 6.613 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C -0.123 4.123 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.022 0.978 43 H 0.094 0.906 44 H 0.017 0.983 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.115 0.885 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.702 6.535 26.483 31.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.153 4.153 4 C -0.145 4.145 5 C -0.148 4.148 6 C -0.076 4.076 7 C -0.131 4.131 8 C 0.297 3.703 9 O -0.460 6.460 10 N -0.347 5.347 11 C -0.074 4.074 12 C 0.001 3.999 13 C -0.078 4.078 14 N -0.252 5.252 15 C -0.118 4.118 16 C -0.073 4.073 17 C 0.229 3.771 18 O -0.499 6.499 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.141 4.141 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.112 0.888 44 H 0.035 0.965 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.078 0.922 48 H 0.133 0.867 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.322 5.955 25.586 31.466 hybrid contribution 0.900 0.912 -1.021 1.638 sum -16.422 6.867 24.565 30.336 Atomic orbital electron populations 1.20820 0.89708 1.03753 1.02614 1.20235 0.97393 0.93145 0.99222 1.21317 0.94523 0.98264 1.01171 1.21381 0.94775 0.98548 0.99789 1.21215 1.00324 0.92488 1.00744 1.19543 0.93875 0.94494 0.99705 1.20766 1.03647 0.95922 0.92767 1.21220 0.76827 0.80092 0.92202 1.90730 1.52601 1.54567 1.48094 1.47973 1.56156 1.23082 1.07453 1.22180 1.00985 0.95789 0.88477 1.21262 0.95884 1.00448 0.82351 1.22440 0.99267 0.97391 0.88665 1.61507 1.01523 1.59805 1.02384 1.22391 0.95883 0.95555 0.97929 1.21746 0.91894 0.98504 0.95149 1.20680 0.82685 0.85242 0.88464 1.90461 1.47464 1.44813 1.67145 1.41918 1.13168 1.45881 1.20135 1.19636 0.99538 1.29037 0.98117 0.90245 1.26039 0.94733 0.97523 1.02964 1.69667 1.06069 1.39418 1.40990 0.84981 0.77547 0.78519 0.77234 1.19867 1.19470 1.19597 1.21099 0.93712 0.98274 1.01007 0.91320 0.90642 0.90334 0.84608 0.84622 0.85562 0.85313 0.85273 0.90691 0.89940 0.88456 0.88428 0.92068 0.96015 0.88814 0.96481 0.92048 0.90752 0.92220 0.86696 0.77057 0.91311 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 71.24 0.71 -0.66 16 2 C -0.10 -1.76 5.88 -19.87 -0.12 -1.88 16 3 C -0.13 -2.33 9.70 22.27 0.22 -2.12 16 4 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 5 C -0.13 -2.45 9.70 22.27 0.22 -2.24 16 6 C -0.08 -1.40 4.37 -19.87 -0.09 -1.48 16 7 C -0.09 -1.20 4.38 29.10 0.13 -1.07 16 8 C 0.51 10.84 7.67 87.66 0.67 11.51 16 9 O -0.58 -18.63 15.61 -3.04 -0.05 -18.67 16 10 N -0.61 -10.92 2.87 -846.74 -2.43 -13.35 16 11 C 0.07 0.54 10.24 127.77 1.31 1.85 16 12 C 0.12 2.91 5.33 86.38 0.46 3.37 16 13 C 0.05 1.35 5.28 86.31 0.46 1.80 16 14 N -0.53 -18.16 4.50 -927.05 -4.17 -22.33 16 15 C 0.03 1.12 8.96 127.69 1.14 2.26 16 16 C 0.06 2.12 5.45 85.56 0.47 2.59 16 17 C 0.44 21.59 7.47 87.66 0.66 22.25 16 18 O -0.61 -34.41 13.91 -3.07 -0.04 -34.45 16 19 N -0.57 -30.01 5.29 -306.98 -1.62 -31.63 16 20 C -0.33 -19.20 9.68 84.04 0.81 -18.39 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -50.13 13.05 21.66 0.28 -49.84 16 24 Si 0.99 43.37 29.55 68.60 2.03 45.40 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 28 C -0.12 -2.27 9.36 22.27 0.21 -2.06 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 31 H 0.08 0.73 8.09 -2.38 -0.02 0.71 16 32 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 34 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.13 0.98 7.35 -2.38 -0.02 0.96 16 36 H 0.13 0.96 8.05 -2.39 -0.02 0.94 16 37 H 0.07 0.41 8.14 -2.39 -0.02 0.40 16 38 H 0.08 0.63 8.07 -2.39 -0.02 0.61 16 39 H 0.10 0.31 6.44 -2.39 -0.02 0.30 16 40 H 0.10 2.09 8.07 -2.39 -0.02 2.07 16 41 H 0.06 1.76 5.83 -2.39 -0.01 1.74 16 42 H 0.02 0.64 8.12 -2.39 -0.02 0.62 16 43 H 0.09 2.06 7.93 -2.38 -0.02 2.04 16 44 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 2.68 5.82 -2.39 -0.01 2.66 16 46 H 0.07 2.47 6.47 -2.39 -0.02 2.45 16 47 H 0.06 2.05 8.12 -2.39 -0.02 2.03 16 48 H 0.12 3.56 7.93 -2.39 -0.02 3.54 16 49 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 50 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 51 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -78.09 419.56 2.13 -75.95 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.20 Total: 35.45 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 7.94 Total: 13.48 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -7.94 Total: -117.15 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -0.09 Total: -53.13 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -78.09 2.13 -75.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715531717.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.348 kcal (2) G-P(sol) polarization free energy of solvation -78.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds