Wall clock time and date at job start Wed Apr 1 2020 05:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46138 * 2 1 4 4 C 1.53115 * 109.46543 * 119.97833 * 2 1 3 5 5 C 1.53433 * 109.72657 * 50.16308 * 4 2 1 6 6 C 1.50603 * 108.31045 * 50.02881 * 5 4 2 7 7 O 1.33180 * 129.60354 * 163.25385 * 6 5 4 8 8 N 1.21435 * 111.57594 * 180.09471 * 7 6 5 9 9 C 1.31504 * 111.51777 * 359.95868 * 8 7 6 10 10 C 1.48327 * 127.14982 * 180.02562 * 9 8 7 11 11 O 1.21495 * 120.00006 * 179.97438 * 10 9 8 12 12 N 1.34779 * 120.00247 * 359.97438 * 10 9 8 13 13 C 1.46502 * 120.00174 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.46748 * 324.99969 * 13 12 10 15 15 C 1.52996 * 109.47359 * 204.99690 * 13 12 10 16 16 N 1.46500 * 109.47097 * 54.99518 * 15 13 12 17 17 C 1.36932 * 120.00196 * 180.02562 * 16 15 13 18 18 H 1.08010 * 119.99814 * 0.02562 * 17 16 15 19 19 C 1.38809 * 120.00187 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00104 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00189 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47091 * 89.99947 * 21 19 17 23 23 H 1.48502 * 109.47327 * 210.00231 * 21 19 17 24 24 H 1.48498 * 109.47004 * 330.00163 * 21 19 17 25 25 C 1.53001 * 109.47117 * 84.99401 * 13 12 10 26 26 C 1.52992 * 117.50055 * 8.74770 * 25 13 12 27 27 C 1.53000 * 117.49852 * 300.08553 * 25 13 12 28 28 C 1.35378 * 123.75986 * 343.28009 * 6 5 4 29 29 C 1.50064 * 124.94152 * 359.78305 * 28 6 5 30 30 H 1.08997 * 109.46652 * 300.02176 * 1 2 3 31 31 H 1.08997 * 109.47021 * 60.01999 * 1 2 3 32 32 H 1.08993 * 109.47121 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47485 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47255 * 299.98280 * 3 2 1 35 35 H 1.09005 * 109.46860 * 59.97592 * 3 2 1 36 36 H 1.09000 * 109.42555 * 290.08787 * 4 2 1 37 37 H 1.08993 * 109.38479 * 170.21650 * 4 2 1 38 38 H 1.08994 * 109.69929 * 290.32574 * 5 4 2 39 39 H 1.09001 * 109.69187 * 169.72823 * 5 4 2 40 40 H 0.97000 * 119.99691 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.47618 * 174.99738 * 15 13 12 42 42 H 1.09002 * 109.46855 * 294.99663 * 15 13 12 43 43 H 0.97001 * 120.00008 * 0.02562 * 16 15 13 44 44 H 0.96994 * 119.99797 * 179.97438 * 20 19 17 45 45 H 1.09002 * 115.55051 * 154.41934 * 25 13 12 46 46 H 1.09000 * 117.50120 * 0.02562 * 26 25 13 47 47 H 1.09000 * 117.49796 * 145.01964 * 26 25 13 48 48 H 1.09000 * 117.50039 * 214.97522 * 27 25 13 49 49 H 1.09002 * 117.50014 * 359.97438 * 27 25 13 50 50 H 1.08993 * 109.70933 * 103.58421 * 29 28 6 51 51 H 1.09006 * 109.71115 * 224.21925 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 6 2.0402 -0.7213 1.2505 5 6 1.3405 -2.0800 1.3864 6 6 1.4426 -2.7989 0.0669 7 8 1.2609 -4.0880 -0.2138 8 7 1.4287 -4.3158 -1.3948 9 6 1.7408 -3.2235 -2.0571 10 6 2.0178 -3.1049 -3.5095 11 8 2.2953 -2.0235 -3.9887 12 7 1.9618 -4.1968 -4.2976 13 6 2.2349 -4.0796 -5.7322 14 1 1.8618 -3.1221 -6.0959 15 6 1.5352 -5.2168 -6.4791 16 7 0.1068 -5.2087 -6.1538 17 6 -0.7271 -6.1424 -6.7085 18 1 -0.3317 -6.8852 -7.3857 19 6 -2.0806 -6.1344 -6.4006 20 7 -2.8821 -7.0323 -6.9335 21 14 -2.7646 -4.8494 -5.2301 22 1 -3.1867 -3.6523 -6.0010 23 1 -3.9343 -5.4106 -4.5075 24 1 -1.7166 -4.4636 -4.2513 25 6 3.7436 -4.1636 -5.9727 26 6 4.6280 -4.5472 -4.7847 27 6 4.6254 -3.1072 -5.3039 28 6 1.7566 -2.1886 -1.1000 29 6 2.0418 -0.7234 -1.2540 30 1 -0.3632 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 3.1297 1.4428 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6759 1.9565 0.8898 36 1 1.8281 -0.1147 2.1309 37 1 3.1161 -0.8744 1.1662 38 1 0.2918 -1.9292 1.6423 39 1 1.8281 -2.6682 2.1638 40 1 1.7407 -5.0603 -3.9149 41 1 1.6641 -5.0797 -7.5528 42 1 1.9707 -6.1701 -6.1797 43 1 -0.2482 -4.5418 -5.5454 44 1 -3.8278 -7.0269 -6.7181 45 1 4.0434 -4.5186 -6.9587 46 1 4.1352 -4.7402 -3.8319 47 1 5.5099 -5.1543 -4.9892 48 1 5.5057 -2.7676 -5.8497 49 1 4.1308 -2.3521 -4.6929 50 1 3.1156 -0.5667 -1.3566 51 1 1.5278 -0.3394 -2.1353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716616833.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:54 Heat of formation + Delta-G solvation = 56.110457 kcal Electronic energy + Delta-G solvation = -32081.440276 eV Core-core repulsion = 27985.026628 eV Total energy + Delta-G solvation = -4096.413648 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.21770 -40.14468 -39.32525 -37.30382 -35.11276 -34.15054 -33.43242 -33.07553 -31.42452 -30.56096 -28.74976 -27.65927 -27.48505 -24.87501 -24.08224 -23.69240 -22.30013 -21.94976 -21.34279 -20.73131 -19.82084 -18.73870 -17.99882 -17.85650 -17.39280 -16.58848 -16.15721 -15.87501 -15.38095 -14.90426 -14.78975 -14.70305 -14.38086 -14.03811 -13.75987 -13.65496 -13.54128 -13.42828 -13.31523 -12.80350 -12.45430 -12.33627 -12.24884 -12.08949 -11.98973 -11.90562 -11.64533 -11.53599 -11.39208 -11.08857 -11.03325 -10.96525 -10.88884 -10.73652 -10.34855 -10.29684 -10.20896 -10.01005 -9.76240 -9.60874 -9.25928 -8.97797 -8.88677 -7.28895 -5.79972 -3.16216 1.04465 1.54707 2.70508 3.01502 3.17615 3.36063 3.40156 3.43574 3.88841 3.95761 4.21562 4.25840 4.35446 4.56835 4.62840 4.67349 4.73013 4.83076 4.90822 4.97978 5.06501 5.09359 5.22868 5.24109 5.34669 5.37279 5.39542 5.42371 5.46003 5.48920 5.51245 5.58089 5.60112 5.66444 5.75139 5.76962 5.78999 5.80506 5.83272 5.97413 6.02413 6.04357 6.10259 6.18245 6.32551 6.39344 6.54086 6.71079 7.49431 7.92542 7.94760 8.16428 8.38634 9.16657 9.89186 10.07949 11.38207 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009991 B = 0.003790 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.730038 B = 7386.065720 C = 8920.301671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.069 4.069 3 C -0.140 4.140 4 C -0.107 4.107 5 C -0.035 4.035 6 C -0.043 4.043 7 O 0.129 5.871 8 N -0.330 5.330 9 C -0.017 4.017 10 C 0.599 3.401 11 O -0.521 6.521 12 N -0.696 5.696 13 C 0.164 3.836 14 H 0.095 0.905 15 C 0.152 3.848 16 N -0.755 5.755 17 C -0.246 4.246 18 H 0.092 0.908 19 C 0.009 3.991 20 N -0.931 5.931 21 Si 0.881 3.119 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.280 1.280 25 C -0.160 4.160 26 C -0.177 4.177 27 C -0.186 4.186 28 C -0.148 4.148 29 C -0.033 4.033 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.412 0.588 41 H 0.047 0.953 42 H 0.036 0.964 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.114 0.886 50 H 0.083 0.917 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.481 15.016 18.556 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.069 4.069 3 C -0.197 4.197 4 C -0.145 4.145 5 C -0.073 4.073 6 C -0.107 4.107 7 O 0.055 5.945 8 N -0.032 5.032 9 C -0.176 4.176 10 C 0.383 3.617 11 O -0.397 6.397 12 N -0.347 5.347 13 C 0.059 3.941 14 H 0.113 0.887 15 C 0.025 3.975 16 N -0.401 5.401 17 C -0.375 4.375 18 H 0.110 0.890 19 C -0.187 4.187 20 N -0.579 5.579 21 Si 0.712 3.288 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.179 4.179 26 C -0.215 4.215 27 C -0.223 4.223 28 C -0.153 4.153 29 C -0.070 4.070 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.248 0.752 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.195 0.805 44 H 0.070 0.930 45 H 0.133 0.867 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.105 0.895 49 H 0.132 0.868 50 H 0.101 0.899 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.432 14.299 17.601 26.880 hybrid contribution -0.672 0.904 0.889 1.435 sum 13.760 15.203 18.490 27.611 Atomic orbital electron populations 1.21980 0.94117 1.02248 1.02099 1.20732 0.96198 0.95584 0.94352 1.21831 1.01101 0.94565 1.02183 1.21723 1.00456 0.93994 0.98279 1.20280 1.03265 0.94430 0.89346 1.24104 1.03902 0.83690 0.98996 1.84697 1.63761 1.25783 1.20228 1.74641 1.15682 1.22858 0.89977 1.23064 1.06872 0.90482 0.97137 1.16836 0.77357 0.84753 0.82749 1.90702 1.48363 1.26826 1.73800 1.45961 1.68730 1.10934 1.09057 1.20937 0.92471 1.01716 0.78928 0.88689 1.20905 0.84874 0.94641 0.97092 1.42700 1.03345 1.37808 1.56297 1.19033 0.89024 1.07463 1.22019 0.89000 1.24634 0.95999 0.98280 0.99812 1.69695 1.04271 1.36512 1.47437 0.86599 0.78653 0.82079 0.81493 1.21027 1.21597 1.20615 1.22665 0.92356 1.04971 0.97948 1.22898 1.01560 0.98620 0.98390 1.23335 1.01705 0.92916 1.04303 1.20591 1.05872 0.98267 0.90549 1.20083 1.01906 0.86682 0.98333 0.92313 0.92282 0.92395 0.92396 0.92165 0.92347 0.89994 0.90982 0.88538 0.88914 0.75223 0.93566 0.94626 0.80502 0.92996 0.86746 0.89272 0.89205 0.89463 0.86753 0.89878 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 7.73 37.16 0.29 -0.90 16 2 C -0.07 -0.52 0.77 -154.16 -0.12 -0.64 16 3 C -0.14 -0.87 8.44 37.16 0.31 -0.56 16 4 C -0.11 -0.63 4.83 -26.45 -0.13 -0.76 16 5 C -0.04 -0.23 5.66 -27.71 -0.16 -0.39 16 6 C -0.04 -0.47 6.65 -35.38 -0.24 -0.70 16 7 O 0.13 1.73 11.18 19.21 0.21 1.94 16 8 N -0.33 -5.18 11.89 33.29 0.40 -4.79 16 9 C -0.02 -0.27 7.19 -82.82 -0.60 -0.87 16 10 C 0.60 10.04 6.69 -12.11 -0.08 9.95 16 11 O -0.52 -9.17 13.11 5.37 0.07 -9.10 16 12 N -0.70 -11.59 3.05 -54.59 -0.17 -11.75 16 13 C 0.16 2.69 2.59 -67.93 -0.18 2.51 16 14 H 0.10 1.69 7.58 -51.93 -0.39 1.29 16 15 C 0.15 2.91 5.80 -4.04 -0.02 2.88 16 16 N -0.76 -18.12 5.24 -59.91 -0.31 -18.43 16 17 C -0.25 -7.01 10.47 -15.06 -0.16 -7.16 16 18 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 19 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 20 N -0.93 -29.57 13.97 55.49 0.78 -28.79 16 21 Si 0.88 23.00 27.74 -169.99 -4.71 18.29 16 22 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 24 H -0.28 -7.08 6.52 56.52 0.37 -6.71 16 25 C -0.16 -2.21 5.70 -90.62 -0.52 -2.73 16 26 C -0.18 -2.31 9.74 -26.70 -0.26 -2.57 16 27 C -0.19 -2.48 9.82 -26.69 -0.26 -2.74 16 28 C -0.15 -1.88 5.59 -104.91 -0.59 -2.46 16 29 C -0.03 -0.35 4.41 -27.90 -0.12 -0.47 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.54 5.66 -51.93 -0.29 0.25 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.33 8.11 -51.93 -0.42 -0.09 16 37 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 38 H 0.10 0.55 6.99 -51.93 -0.36 0.19 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.41 7.05 8.38 -40.82 -0.34 6.71 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.36 8.78 5.20 -40.82 -0.21 8.57 16 44 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 45 H 0.11 1.43 8.11 -51.93 -0.42 1.01 16 46 H 0.09 1.25 6.67 -51.93 -0.35 0.91 16 47 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 49 H 0.11 1.74 5.01 -51.93 -0.26 1.48 16 50 H 0.08 0.85 8.12 -51.93 -0.42 0.42 16 51 H 0.09 1.11 7.81 -51.93 -0.41 0.71 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -33.09 398.03 -8.78 -41.87 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -8.12 Total: 12.21 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.92 Total: -7.44 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: 0.69 Total: -63.76 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.29 Total: -7.16 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.71 Total: 18.29 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.09 -8.78 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716616833.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.977 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds