Wall clock time and date at job start Wed Apr 1 2020 05:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46138 * 2 1 4 4 C 1.53115 * 109.46543 * 119.97833 * 2 1 3 5 5 C 1.53433 * 109.72657 * 50.16308 * 4 2 1 6 6 C 1.50603 * 108.31045 * 50.02881 * 5 4 2 7 7 O 1.33180 * 129.60354 * 163.25385 * 6 5 4 8 8 N 1.21435 * 111.57594 * 180.09471 * 7 6 5 9 9 C 1.31504 * 111.51777 * 359.95868 * 8 7 6 10 10 C 1.48327 * 127.14982 * 180.02562 * 9 8 7 11 11 O 1.21495 * 120.00006 * 179.97438 * 10 9 8 12 12 N 1.34779 * 120.00247 * 359.97438 * 10 9 8 13 13 C 1.46502 * 120.00174 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.46748 * 324.99969 * 13 12 10 15 15 C 1.52996 * 109.47359 * 204.99690 * 13 12 10 16 16 N 1.46500 * 109.47097 * 54.99518 * 15 13 12 17 17 C 1.36932 * 120.00196 * 180.02562 * 16 15 13 18 18 H 1.08010 * 119.99814 * 0.02562 * 17 16 15 19 19 C 1.38809 * 120.00187 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00104 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00189 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47091 * 89.99947 * 21 19 17 23 23 H 1.48502 * 109.47327 * 210.00231 * 21 19 17 24 24 H 1.48498 * 109.47004 * 330.00163 * 21 19 17 25 25 C 1.53001 * 109.47117 * 84.99401 * 13 12 10 26 26 C 1.52992 * 117.50055 * 8.74770 * 25 13 12 27 27 C 1.53000 * 117.49852 * 300.08553 * 25 13 12 28 28 C 1.35378 * 123.75986 * 343.28009 * 6 5 4 29 29 C 1.50064 * 124.94152 * 359.78305 * 28 6 5 30 30 H 1.08997 * 109.46652 * 300.02176 * 1 2 3 31 31 H 1.08997 * 109.47021 * 60.01999 * 1 2 3 32 32 H 1.08993 * 109.47121 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47485 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47255 * 299.98280 * 3 2 1 35 35 H 1.09005 * 109.46860 * 59.97592 * 3 2 1 36 36 H 1.09000 * 109.42555 * 290.08787 * 4 2 1 37 37 H 1.08993 * 109.38479 * 170.21650 * 4 2 1 38 38 H 1.08994 * 109.69929 * 290.32574 * 5 4 2 39 39 H 1.09001 * 109.69187 * 169.72823 * 5 4 2 40 40 H 0.97000 * 119.99691 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.47618 * 174.99738 * 15 13 12 42 42 H 1.09002 * 109.46855 * 294.99663 * 15 13 12 43 43 H 0.97001 * 120.00008 * 0.02562 * 16 15 13 44 44 H 0.96994 * 119.99797 * 179.97438 * 20 19 17 45 45 H 1.09002 * 115.55051 * 154.41934 * 25 13 12 46 46 H 1.09000 * 117.50120 * 0.02562 * 26 25 13 47 47 H 1.09000 * 117.49796 * 145.01964 * 26 25 13 48 48 H 1.09000 * 117.50039 * 214.97522 * 27 25 13 49 49 H 1.09002 * 117.50014 * 359.97438 * 27 25 13 50 50 H 1.08993 * 109.70933 * 103.58421 * 29 28 6 51 51 H 1.09006 * 109.71115 * 224.21925 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 6 2.0402 -0.7213 1.2505 5 6 1.3405 -2.0800 1.3864 6 6 1.4426 -2.7989 0.0669 7 8 1.2609 -4.0880 -0.2138 8 7 1.4287 -4.3158 -1.3948 9 6 1.7408 -3.2235 -2.0571 10 6 2.0178 -3.1049 -3.5095 11 8 2.2953 -2.0235 -3.9887 12 7 1.9618 -4.1968 -4.2976 13 6 2.2349 -4.0796 -5.7322 14 1 1.8618 -3.1221 -6.0959 15 6 1.5352 -5.2168 -6.4791 16 7 0.1068 -5.2087 -6.1538 17 6 -0.7271 -6.1424 -6.7085 18 1 -0.3317 -6.8852 -7.3857 19 6 -2.0806 -6.1344 -6.4006 20 7 -2.8821 -7.0323 -6.9335 21 14 -2.7646 -4.8494 -5.2301 22 1 -3.1867 -3.6523 -6.0010 23 1 -3.9343 -5.4106 -4.5075 24 1 -1.7166 -4.4636 -4.2513 25 6 3.7436 -4.1636 -5.9727 26 6 4.6280 -4.5472 -4.7847 27 6 4.6254 -3.1072 -5.3039 28 6 1.7566 -2.1886 -1.1000 29 6 2.0418 -0.7234 -1.2540 30 1 -0.3632 0.5142 0.8898 31 1 -0.3633 0.5135 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 3.1297 1.4428 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6759 1.9565 0.8898 36 1 1.8281 -0.1147 2.1309 37 1 3.1161 -0.8744 1.1662 38 1 0.2918 -1.9292 1.6423 39 1 1.8281 -2.6682 2.1638 40 1 1.7407 -5.0603 -3.9149 41 1 1.6641 -5.0797 -7.5528 42 1 1.9707 -6.1701 -6.1797 43 1 -0.2482 -4.5418 -5.5454 44 1 -3.8278 -7.0269 -6.7181 45 1 4.0434 -4.5186 -6.9587 46 1 4.1352 -4.7402 -3.8319 47 1 5.5099 -5.1543 -4.9892 48 1 5.5057 -2.7676 -5.8497 49 1 4.1308 -2.3521 -4.6929 50 1 3.1156 -0.5667 -1.3566 51 1 1.5278 -0.3394 -2.1353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716616833.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:53 Heat of formation + Delta-G solvation = 36.284501 kcal Electronic energy + Delta-G solvation = -32082.299994 eV Core-core repulsion = 27985.026628 eV Total energy + Delta-G solvation = -4097.273366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.27274 -41.43599 -39.99787 -38.57384 -36.78644 -35.32130 -34.82360 -33.87934 -33.39145 -31.42345 -30.35553 -28.38975 -28.14072 -26.29781 -25.42451 -24.55492 -23.49718 -22.99373 -22.88630 -21.85732 -21.07183 -19.99945 -19.42115 -19.04112 -18.39991 -17.75047 -17.42800 -17.22988 -16.63494 -16.13081 -15.86701 -15.62028 -15.42175 -15.34920 -15.15580 -14.91819 -14.75166 -14.43588 -14.33331 -14.04678 -13.90770 -13.55172 -13.14285 -13.06853 -12.94578 -12.89948 -12.81076 -12.70461 -12.59668 -12.42721 -12.30076 -12.23206 -11.91992 -11.73792 -11.62596 -11.57269 -11.32148 -11.25877 -11.16549 -11.10696 -10.91739 -10.23550 -10.15381 -9.40374 -8.11117 -5.44058 -0.05708 0.57768 1.26509 1.27186 1.33522 1.69647 1.90704 1.95311 2.36823 2.78213 2.84474 3.21164 3.32922 3.42927 3.53651 3.76535 3.79376 3.88145 3.92208 3.96614 3.98294 4.07812 4.16064 4.26993 4.34266 4.38119 4.43538 4.48784 4.60529 4.69853 4.73017 4.76431 4.78111 4.86849 4.88681 4.96971 4.98415 4.99025 5.04523 5.11491 5.13072 5.15501 5.20505 5.29203 5.32913 5.37113 5.45632 5.50863 5.68150 6.12863 6.17243 6.78861 6.96055 6.97722 7.72873 7.90431 9.10338 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009991 B = 0.003790 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2801.730038 B = 7386.065720 C = 8920.301671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.103 4.103 5 C -0.036 4.036 6 C -0.024 4.024 7 O 0.132 5.868 8 N -0.358 5.358 9 C -0.045 4.045 10 C 0.597 3.403 11 O -0.535 6.535 12 N -0.698 5.698 13 C 0.173 3.827 14 H 0.080 0.920 15 C 0.152 3.848 16 N -0.759 5.759 17 C -0.230 4.230 18 H 0.068 0.932 19 C -0.053 4.053 20 N -0.977 5.977 21 Si 0.945 3.055 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.272 1.272 25 C -0.164 4.164 26 C -0.169 4.169 27 C -0.181 4.181 28 C -0.164 4.164 29 C -0.030 4.030 30 H 0.082 0.918 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.409 0.591 41 H 0.055 0.945 42 H 0.042 0.958 43 H 0.361 0.639 44 H 0.259 0.741 45 H 0.133 0.867 46 H 0.075 0.925 47 H 0.111 0.889 48 H 0.109 0.891 49 H 0.094 0.906 50 H 0.082 0.918 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.925 16.789 21.344 31.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 C -0.194 4.194 4 C -0.140 4.140 5 C -0.074 4.074 6 C -0.089 4.089 7 O 0.057 5.943 8 N -0.059 5.059 9 C -0.201 4.201 10 C 0.382 3.618 11 O -0.412 6.412 12 N -0.348 5.348 13 C 0.069 3.931 14 H 0.098 0.902 15 C 0.026 3.974 16 N -0.404 5.404 17 C -0.361 4.361 18 H 0.086 0.914 19 C -0.245 4.245 20 N -0.627 5.627 21 Si 0.774 3.226 22 H -0.207 1.207 23 H -0.216 1.216 24 H -0.197 1.197 25 C -0.183 4.183 26 C -0.207 4.207 27 C -0.218 4.218 28 C -0.169 4.169 29 C -0.068 4.068 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.131 0.869 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.244 0.756 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.194 0.806 44 H 0.068 0.932 45 H 0.151 0.849 46 H 0.094 0.906 47 H 0.130 0.870 48 H 0.127 0.873 49 H 0.112 0.888 50 H 0.101 0.899 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.926 16.091 20.381 30.462 hybrid contribution -1.050 0.341 0.014 1.104 sum 14.876 16.432 20.394 30.121 Atomic orbital electron populations 1.21985 0.94514 1.01394 1.02516 1.20730 0.95785 0.96247 0.93672 1.21814 1.01424 0.93573 1.02594 1.21766 1.00410 0.93555 0.98269 1.20645 1.04776 0.94564 0.87380 1.24940 1.01166 0.82451 1.00331 1.84652 1.63215 1.27137 1.19306 1.74617 1.16981 1.23419 0.90911 1.23133 1.08309 0.91781 0.96896 1.17023 0.76937 0.84416 0.83412 1.90686 1.49010 1.27200 1.74314 1.45967 1.68961 1.10833 1.09066 1.20756 0.94137 0.99602 0.78615 0.90159 1.21057 0.82361 0.96038 0.97932 1.42721 1.04992 1.36766 1.55952 1.19054 0.89541 1.07005 1.20510 0.91411 1.25309 0.96549 1.00557 1.02071 1.69840 1.04528 1.38746 1.49594 0.85575 0.77912 0.79576 0.79586 1.20657 1.21644 1.19736 1.22620 0.90424 1.06079 0.99225 1.22930 1.01760 0.98674 0.97299 1.23293 1.01957 0.92540 1.03989 1.20887 1.06634 0.98861 0.90526 1.20113 1.01654 0.85817 0.99182 0.89894 0.93900 0.93818 0.91893 0.93300 0.90411 0.86870 0.90722 0.86908 0.86216 0.75586 0.92722 0.94002 0.80601 0.93184 0.84905 0.90606 0.87030 0.87285 0.88813 0.89933 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 7.73 71.98 0.56 -1.55 16 2 C -0.06 -0.84 0.77 -51.96 -0.04 -0.88 16 3 C -0.14 -1.40 8.44 71.98 0.61 -0.79 16 4 C -0.10 -0.82 4.83 30.78 0.15 -0.67 16 5 C -0.04 -0.35 5.66 29.96 0.17 -0.18 16 6 C -0.02 -0.49 6.65 24.99 0.17 -0.33 16 7 O 0.13 3.42 11.18 78.77 0.88 4.30 16 8 N -0.36 -11.32 11.89 -48.94 -0.58 -11.91 16 9 C -0.04 -1.42 7.19 42.55 0.31 -1.11 16 10 C 0.60 20.50 6.69 86.93 0.58 21.08 16 11 O -0.54 -19.41 13.11 -3.70 -0.05 -19.46 16 12 N -0.70 -23.55 3.05 -444.94 -1.36 -24.91 16 13 C 0.17 5.67 2.59 44.99 0.12 5.79 16 14 H 0.08 2.88 7.58 -2.38 -0.02 2.86 16 15 C 0.15 5.77 5.80 86.38 0.50 6.27 16 16 N -0.76 -36.50 5.24 -343.46 -1.80 -38.30 16 17 C -0.23 -13.32 10.47 84.03 0.88 -12.44 16 18 H 0.07 4.20 8.06 -2.91 -0.02 4.17 16 19 C -0.05 -3.18 5.50 84.86 0.47 -2.71 16 20 N -0.98 -63.34 13.97 21.65 0.30 -63.04 16 21 Si 0.94 48.34 27.74 68.60 1.90 50.24 16 22 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 24 H -0.27 -13.34 6.52 99.48 0.65 -12.70 16 25 C -0.16 -4.33 5.70 -10.80 -0.06 -4.39 16 26 C -0.17 -4.17 9.74 30.62 0.30 -3.88 16 27 C -0.18 -4.60 9.82 30.62 0.30 -4.30 16 28 C -0.16 -4.11 5.59 -20.05 -0.11 -4.23 16 29 C -0.03 -0.63 4.41 29.83 0.13 -0.50 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.04 0.74 5.66 -2.39 -0.01 0.73 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.11 0.31 8.11 -2.39 -0.02 0.29 16 37 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 38 H 0.11 0.84 6.99 -2.39 -0.02 0.82 16 39 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.41 14.26 8.38 -92.71 -0.78 13.48 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.36 17.50 5.20 -92.71 -0.48 17.02 16 44 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 45 H 0.13 3.03 8.11 -2.39 -0.02 3.01 16 46 H 0.08 2.10 6.67 -2.39 -0.02 2.08 16 47 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.09 2.85 5.01 -2.39 -0.01 2.84 16 50 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 51 H 0.06 1.66 7.81 -2.38 -0.02 1.64 16 Total: -1.00 -73.74 398.03 3.96 -69.78 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.36 Total: 38.11 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 5.02 Total: -4.82 kcal Atomic # 7 Polarization: -134.72 SS G_CDS: -3.44 Total: -138.15 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.83 Total: -15.16 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.90 Total: 50.24 kcal Total: -73.74 3.96 -69.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716616833.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.069 kcal (2) G-P(sol) polarization free energy of solvation -73.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds