Wall clock time and date at job start Wed Apr 1 2020 05:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48505 * 109.46770 * 269.99414 * 3 2 1 5 5 H 1.48498 * 109.47312 * 29.99839 * 3 2 1 6 6 H 1.48500 * 109.47054 * 150.00156 * 3 2 1 7 7 C 1.38810 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00188 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99830 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46793 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47251 * 55.00367 * 11 10 9 13 13 C 1.52999 * 109.46793 * 174.99932 * 11 10 9 14 14 C 1.53004 * 109.47252 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47188 * 300.00144 * 14 13 11 16 16 H 1.08998 * 109.47183 * 300.00053 * 15 14 13 17 17 C 1.52990 * 109.47251 * 179.97438 * 15 14 13 18 18 N 1.46499 * 109.47304 * 174.99822 * 17 15 14 19 19 C 1.34777 * 120.00195 * 179.97438 * 18 17 15 20 20 O 1.21613 * 119.99966 * 0.02562 * 19 18 17 21 21 C 1.47425 * 119.99932 * 180.27832 * 19 18 17 22 22 C 1.36084 * 126.44841 * 179.41672 * 21 19 18 23 23 O 1.34251 * 106.95222 * 179.90174 * 22 21 19 24 24 C 1.34050 * 108.22588 * 0.36146 * 23 22 21 25 25 C 1.50699 * 125.38007 * 179.76984 * 24 23 22 26 26 C 1.53003 * 117.50015 * 8.75213 * 25 24 23 27 27 C 1.53000 * 117.50012 * 300.08825 * 25 24 23 28 28 N 1.29939 * 109.24100 * 359.77008 * 24 23 22 29 29 C 1.53007 * 109.46713 * 59.99818 * 15 14 13 30 30 C 1.52991 * 109.47315 * 295.00003 * 11 10 9 31 31 H 0.96995 * 120.00071 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00106 * 0.02562 * 9 7 2 33 33 H 1.08992 * 109.46790 * 59.99641 * 10 9 7 34 34 H 1.08996 * 109.46903 * 299.99815 * 10 9 7 35 35 H 1.09000 * 109.47604 * 60.00236 * 13 11 10 36 36 H 1.09003 * 109.47550 * 299.99982 * 13 11 10 37 37 H 1.08997 * 109.47190 * 179.97438 * 14 13 11 38 38 H 1.09006 * 109.46955 * 59.99931 * 14 13 11 39 39 H 1.08998 * 109.47186 * 55.00072 * 17 15 14 40 40 H 1.09002 * 109.47663 * 295.00355 * 17 15 14 41 41 H 0.97000 * 120.00069 * 0.02562 * 18 17 15 42 42 H 1.08003 * 126.52572 * 0.03586 * 22 21 19 43 43 H 1.09004 * 115.54940 * 154.41771 * 25 24 23 44 44 H 1.08998 * 117.49489 * 359.97438 * 26 25 24 45 45 H 1.09000 * 117.49911 * 145.02314 * 26 25 24 46 46 H 1.08999 * 117.49736 * 214.98109 * 27 25 24 47 47 H 1.08998 * 117.49597 * 359.97438 * 27 25 24 48 48 H 1.08992 * 109.47512 * 60.00127 * 29 15 14 49 49 H 1.09003 * 109.46661 * 180.02562 * 29 15 14 50 50 H 1.08998 * 109.47259 * 300.00359 * 30 11 10 51 51 H 1.09006 * 109.47437 * 60.00358 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 1 0.3795 -4.7131 -0.8404 13 6 1.8247 -6.1411 -0.1246 14 6 0.8305 -7.3041 -0.1246 15 6 0.0357 -7.2956 1.1828 16 1 0.7198 -7.4025 2.0246 17 6 -0.9589 -8.4581 1.1825 18 7 -1.6353 -8.5224 2.4804 19 6 -2.5612 -9.4742 2.7114 20 8 -2.8347 -10.2800 1.8426 21 6 -3.2462 -9.5351 4.0154 22 6 -4.2044 -10.4282 4.3843 23 8 -4.5526 -10.1299 5.6461 24 6 -3.8304 -9.0720 6.0414 25 6 -3.9172 -8.4122 7.3935 26 6 -4.7525 -9.1109 8.4682 27 6 -5.2692 -7.8293 7.8096 28 7 -3.0436 -8.7052 5.0744 29 6 -0.7251 -5.9741 1.3084 30 6 0.2697 -4.8109 1.3087 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0002 33 1 2.6848 -3.7145 0.8904 34 1 2.6848 -3.7145 -0.8894 35 1 2.5092 -6.2479 0.7170 36 1 2.3906 -6.1475 -1.0562 37 1 1.3725 -8.2455 -0.2146 38 1 0.1463 -7.1972 -0.9664 39 1 -0.4262 -9.3921 1.0039 40 1 -1.6971 -8.3047 0.3953 41 1 -1.4174 -7.8795 3.1732 42 1 -4.6066 -11.2265 3.7782 43 1 -3.0203 -7.8842 7.7174 44 1 -5.2395 -10.0476 8.1971 45 1 -4.4054 -9.0422 9.4992 46 1 -5.2618 -6.9180 8.4076 47 1 -6.0958 -7.9226 7.1052 48 1 -1.4092 -5.8672 0.4667 49 1 -1.2910 -5.9679 2.2400 50 1 0.9541 -4.9176 2.1503 51 1 -0.2724 -3.8695 1.3983 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717003008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:50 Heat of formation + Delta-G solvation = -3.435830 kcal Electronic energy + Delta-G solvation = -29504.977613 eV Core-core repulsion = 25405.981844 eV Total energy + Delta-G solvation = -4098.995769 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.87276 -39.93624 -38.69852 -37.74807 -35.60153 -35.27405 -34.07374 -32.02056 -30.77729 -30.54733 -29.91193 -26.95166 -24.84101 -24.69308 -23.57560 -22.99718 -22.77073 -21.99715 -21.32104 -20.59372 -20.14292 -19.51670 -18.42493 -17.31594 -17.09593 -17.00531 -16.30846 -16.05113 -15.55489 -15.27479 -14.84888 -14.68232 -14.33084 -14.07429 -13.94139 -13.78786 -13.63183 -13.14632 -12.99334 -12.95404 -12.79048 -12.18361 -12.16437 -12.03578 -11.94749 -11.52698 -11.38394 -11.27865 -11.22862 -11.19040 -10.93114 -10.84724 -10.80481 -10.69545 -10.46273 -10.16187 -10.05895 -9.90231 -9.71060 -9.50014 -9.41010 -9.16760 -8.81939 -6.85485 -5.72168 -2.99843 0.69525 1.53451 2.07060 2.82431 2.97213 3.16453 3.38788 3.45954 3.50873 3.52675 4.11103 4.25649 4.29053 4.42110 4.58065 4.62229 4.65374 4.76463 4.85093 5.00812 5.06267 5.19172 5.21950 5.26127 5.37892 5.39303 5.42359 5.47527 5.50686 5.60390 5.62305 5.64839 5.68967 5.73187 5.78197 5.80584 6.08692 6.16409 6.18304 6.27007 6.33702 6.35771 6.40439 6.49444 6.62853 6.79819 6.93539 6.99722 7.03902 7.32584 7.74149 7.90082 8.47458 9.58234 10.18209 10.52813 11.50941 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.001923 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.878042 B =14559.876123 C =16651.666348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.157 3.843 11 C -0.094 4.094 12 H 0.068 0.932 13 C -0.109 4.109 14 C -0.108 4.108 15 C -0.098 4.098 16 H 0.077 0.923 17 C 0.122 3.878 18 N -0.707 5.707 19 C 0.601 3.399 20 O -0.540 6.540 21 C -0.070 4.070 22 C 0.011 3.989 23 O -0.196 6.196 24 C 0.231 3.769 25 C -0.076 4.076 26 C -0.162 4.162 27 C -0.156 4.156 28 N -0.455 5.455 29 C -0.114 4.114 30 C -0.108 4.108 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.411 0.589 42 H 0.232 0.768 43 H 0.150 0.850 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.101 0.899 48 H 0.063 0.937 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.442 -24.476 14.582 30.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.029 3.971 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.147 4.147 14 C -0.146 4.146 15 C -0.117 4.117 16 H 0.095 0.905 17 C -0.001 4.001 18 N -0.358 5.358 19 C 0.386 3.614 20 O -0.418 6.418 21 C -0.190 4.190 22 C -0.062 4.062 23 O -0.082 6.082 24 C 0.022 3.978 25 C -0.094 4.094 26 C -0.200 4.200 27 C -0.194 4.194 28 N -0.184 5.184 29 C -0.152 4.152 30 C -0.146 4.146 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.247 0.753 42 H 0.248 0.752 43 H 0.167 0.833 44 H 0.122 0.878 45 H 0.130 0.870 46 H 0.132 0.868 47 H 0.120 0.880 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.076 0.924 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.052 -24.415 13.974 29.552 hybrid contribution -0.153 0.725 0.135 0.753 sum -9.204 -23.690 14.109 29.069 Atomic orbital electron populations 1.69658 1.05072 1.25532 1.58111 1.24733 0.95527 0.97639 1.03309 0.86196 0.78633 0.83946 0.77475 1.21804 1.21815 1.20820 1.19251 0.91020 0.84309 1.42188 0.91294 1.42395 1.05860 1.00005 1.89359 1.20691 0.93302 0.85591 0.97519 1.21321 0.97653 0.94275 0.98013 0.91308 1.21502 0.97468 0.93958 1.01812 1.21474 0.98037 0.98621 0.96436 1.21438 0.96555 0.94106 0.99588 0.90512 1.21561 0.95211 0.99011 0.84270 1.45852 1.40015 1.32507 1.17403 1.16713 0.79196 0.81274 0.84204 1.90829 1.65083 1.41035 1.44805 1.21821 1.02821 0.98044 0.96287 1.25287 0.97292 1.01066 0.82600 1.84351 1.54379 1.41837 1.27614 1.25115 0.89734 0.86165 0.96767 1.20322 0.99065 1.04053 0.86000 1.23148 1.01927 0.97447 0.97454 1.23178 0.94865 0.98315 1.03039 1.70731 1.22798 1.25660 0.99210 1.21648 0.98045 0.93846 1.01646 1.21519 0.97572 0.98096 0.97404 0.93595 0.78252 0.96529 0.96600 0.92068 0.91904 0.92063 0.91647 0.91273 0.91040 0.75269 0.75173 0.83269 0.87786 0.87026 0.86831 0.88044 0.91818 0.92417 0.92384 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.84 5.33 -59.91 -0.32 -19.16 16 10 C 0.16 3.21 5.65 -4.04 -0.02 3.18 16 11 C -0.09 -1.51 2.22 -90.63 -0.20 -1.71 16 12 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 13 C -0.11 -1.39 5.20 -26.73 -0.14 -1.53 16 14 C -0.11 -1.15 5.20 -26.73 -0.14 -1.29 16 15 C -0.10 -1.04 2.23 -90.62 -0.20 -1.24 16 16 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 17 C 0.12 1.31 5.06 -4.05 -0.02 1.28 16 18 N -0.71 -7.86 5.28 -61.39 -0.32 -8.19 16 19 C 0.60 7.48 7.81 -12.52 -0.10 7.38 16 20 O -0.54 -7.93 16.89 5.27 0.09 -7.84 16 21 C -0.07 -0.77 6.99 -83.02 -0.58 -1.35 16 22 C 0.01 0.10 11.94 29.96 0.36 0.46 16 23 O -0.20 -1.68 10.40 6.53 0.07 -1.62 16 24 C 0.23 2.09 7.80 -13.08 -0.10 1.98 16 25 C -0.08 -0.45 6.33 -91.77 -0.58 -1.03 16 26 C -0.16 -0.64 10.16 -26.69 -0.27 -0.91 16 27 C -0.16 -0.70 10.24 -26.69 -0.27 -0.98 16 28 N -0.45 -5.01 11.06 -7.66 -0.08 -5.09 16 29 C -0.11 -1.43 5.08 -26.70 -0.14 -1.56 16 30 C -0.11 -1.67 5.08 -26.71 -0.14 -1.81 16 31 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.38 10.32 6.85 -40.82 -0.28 10.04 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.41 4.32 7.38 -40.82 -0.30 4.02 16 42 H 0.23 1.30 8.06 -52.48 -0.42 0.87 16 43 H 0.15 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.10 0.44 7.94 -51.93 -0.41 0.02 16 45 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.06 0.69 7.18 -51.93 -0.37 0.32 16 50 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.07 1.37 7.18 -51.93 -0.37 1.00 16 LS Contribution 416.39 15.07 6.27 6.27 Total: -1.00 -34.06 416.39 -9.86 -43.92 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -8.47 Total: 8.52 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.79 Total: -6.61 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.00 Total: -60.37 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.16 Total: -9.46 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.06 -9.86 -43.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717003008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.484 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds