Wall clock time and date at job start Wed Apr 1 2020 04:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00038 * 2 1 4 4 H 1.48499 * 109.47199 * 240.00446 * 3 2 1 5 5 H 1.48493 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46866 * 120.00534 * 3 2 1 7 7 C 1.38809 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00310 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99896 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47148 * 179.97438 * 10 9 7 12 12 H 1.09011 * 109.46639 * 65.00167 * 11 10 9 13 13 N 1.46498 * 109.47324 * 305.00384 * 11 10 9 14 14 C 1.34779 * 120.00115 * 124.66698 * 13 11 10 15 15 O 1.21606 * 120.00112 * 354.75921 * 14 13 11 16 16 C 1.47424 * 119.99792 * 174.75181 * 14 13 11 17 17 C 1.36093 * 126.44298 * 179.97438 * 16 14 13 18 18 O 1.34257 * 106.94511 * 180.29971 * 17 16 14 19 19 C 1.34047 * 108.22922 * 359.58090 * 18 17 16 20 20 C 1.50699 * 125.38435 * 180.16718 * 19 18 17 21 21 C 1.53007 * 109.46976 * 270.30816 * 20 19 18 22 22 C 1.52994 * 117.49809 * 243.74353 * 21 20 19 23 23 C 1.53003 * 117.49699 * 175.08353 * 21 20 19 24 24 N 1.29945 * 109.24289 * 0.43132 * 19 18 17 25 25 C 1.52998 * 109.47301 * 185.00162 * 11 10 9 26 26 C 1.54264 * 110.03030 * 301.46246 * 25 11 10 27 27 C 1.54896 * 104.19540 * 217.10672 * 26 25 11 28 28 C 1.54887 * 102.74972 * 37.94227 * 27 26 25 29 29 C 1.53878 * 110.03059 * 184.29804 * 25 11 10 30 30 H 0.97001 * 120.00067 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00180 * 359.97438 * 9 7 2 32 32 H 1.09006 * 109.47066 * 60.00078 * 10 9 7 33 33 H 1.08995 * 109.47087 * 300.00036 * 10 9 7 34 34 H 0.96997 * 120.00370 * 304.67110 * 13 11 10 35 35 H 1.07997 * 126.52945 * 0.04330 * 17 16 14 36 36 H 1.09001 * 109.47074 * 30.30724 * 20 19 18 37 37 H 1.08997 * 109.47426 * 150.30635 * 20 19 18 38 38 H 1.08999 * 115.54985 * 29.41892 * 21 20 19 39 39 H 1.08997 * 117.50250 * 359.97438 * 22 21 20 40 40 H 1.09002 * 117.50199 * 145.02198 * 22 21 20 41 41 H 1.08999 * 117.49687 * 214.98312 * 23 21 20 42 42 H 1.09003 * 117.49918 * 359.97438 * 23 21 20 43 43 H 1.08989 * 110.01710 * 62.90599 * 25 11 10 44 44 H 1.08998 * 110.49217 * 335.78317 * 26 25 11 45 45 H 1.09006 * 110.48865 * 98.43030 * 26 25 11 46 46 H 1.09001 * 110.75155 * 279.62914 * 27 26 25 47 47 H 1.08996 * 110.91336 * 156.33476 * 27 26 25 48 48 H 1.08995 * 110.48763 * 203.37946 * 28 27 26 49 49 H 1.08998 * 110.59519 * 80.79306 * 28 27 26 50 50 H 1.09001 * 110.02906 * 238.56368 * 29 25 11 51 51 H 1.08993 * 110.03389 * 0.02562 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0639 -4.8197 -0.0008 12 1 0.4966 -4.8134 -0.9316 13 7 0.1456 -4.6763 1.1317 14 6 -1.1856 -4.6575 0.9217 15 8 -1.6223 -4.6634 -0.2133 16 6 -2.1123 -4.6299 2.0679 17 6 -3.4717 -4.6085 2.0081 18 8 -3.9187 -4.5807 3.2738 19 6 -2.8581 -4.5942 4.0934 20 6 -2.9185 -4.5757 5.5991 21 6 -2.9156 -3.1272 6.0919 22 6 -1.7243 -2.6707 6.9363 23 6 -3.0889 -2.8915 7.5937 24 7 -1.7693 -4.6202 3.3846 25 6 1.8248 -6.1412 0.1238 26 6 2.8225 -6.2885 -1.0435 27 6 2.7820 -7.7977 -1.3896 28 6 1.2845 -8.1497 -1.2096 29 6 0.8468 -7.3245 0.0182 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6854 -3.7149 0.8879 33 1 2.6840 -3.7141 -0.8921 34 1 0.4956 -4.5949 2.0326 35 1 -4.0759 -4.6091 1.1130 36 1 -3.8306 -5.0710 5.9322 37 1 -2.0524 -5.0990 6.0040 38 1 -3.3602 -2.3990 5.4136 39 1 -0.9428 -3.4024 7.1412 40 1 -1.3852 -1.6420 6.8139 41 1 -3.6472 -2.0081 7.9034 42 1 -3.2054 -3.7684 8.2306 43 1 2.3545 -6.1784 1.0756 44 1 2.5011 -5.6925 -1.8977 45 1 3.8242 -5.9961 -0.7285 46 1 3.3993 -8.3696 -0.6967 47 1 3.0983 -7.9696 -2.4184 48 1 1.1637 -9.2154 -1.0158 49 1 0.7130 -7.8559 -2.0901 50 1 0.9027 -7.9365 0.9184 51 1 -0.1697 -6.9574 -0.1223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724104531.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:18 Heat of formation + Delta-G solvation = 3.635789 kcal Electronic energy + Delta-G solvation = -31073.818926 eV Core-core repulsion = 26975.129806 eV Total energy + Delta-G solvation = -4098.689120 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.36238 -39.67592 -37.94618 -37.76139 -35.24972 -34.78227 -33.42691 -31.90350 -31.07104 -29.60880 -28.54671 -27.96149 -26.22413 -24.32203 -22.97109 -22.55910 -22.00273 -21.34434 -20.70306 -20.39921 -20.09642 -19.54962 -17.91455 -17.09284 -16.74220 -16.46682 -16.05556 -15.85937 -15.31078 -15.07663 -14.60707 -14.48802 -14.28324 -14.09405 -13.63416 -13.49721 -13.23888 -13.20962 -13.09274 -12.99576 -12.49702 -12.02738 -11.96107 -11.70122 -11.35008 -11.26604 -11.12706 -10.98974 -10.92792 -10.85212 -10.75775 -10.73556 -10.60487 -10.57513 -10.44600 -10.25283 -10.22225 -10.02246 -9.76035 -9.65444 -8.95327 -8.81654 -8.49586 -6.84302 -5.68020 -2.97162 1.22981 2.11304 2.56675 3.39753 3.47606 3.51358 3.52855 3.58723 3.65784 3.86392 4.48642 4.60433 4.66060 4.70147 4.74463 4.76282 4.85561 4.89332 4.96508 5.13537 5.29022 5.30634 5.34647 5.45092 5.56215 5.60085 5.61462 5.62882 5.68922 5.71668 5.75371 5.76424 5.79442 5.92610 5.93767 5.96518 5.99102 6.05081 6.07136 6.15051 6.19865 6.35603 6.39494 6.43745 6.55261 6.57938 6.75975 7.03491 7.51490 7.74530 7.96467 8.49540 8.57987 9.60837 10.20027 10.55138 11.54189 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.005885 B = 0.004206 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4756.606595 B = 6656.022393 C =10050.330300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.144 3.856 11 C 0.137 3.863 12 H 0.101 0.899 13 N -0.691 5.691 14 C 0.606 3.394 15 O -0.538 6.538 16 C -0.059 4.059 17 C 0.007 3.993 18 O -0.198 6.198 19 C 0.194 3.806 20 C 0.011 3.989 21 C -0.156 4.156 22 C -0.170 4.170 23 C -0.175 4.175 24 N -0.449 5.449 25 C -0.097 4.097 26 C -0.116 4.116 27 C -0.124 4.124 28 C -0.124 4.124 29 C -0.118 4.118 30 H 0.254 0.746 31 H 0.386 0.614 32 H 0.019 0.981 33 H 0.032 0.968 34 H 0.407 0.593 35 H 0.230 0.770 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.057 0.943 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.794 -16.396 10.731 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.015 3.985 11 C 0.032 3.968 12 H 0.119 0.881 13 N -0.339 5.339 14 C 0.391 3.609 15 O -0.415 6.415 16 C -0.180 4.180 17 C -0.067 4.067 18 O -0.084 6.084 19 C -0.015 4.015 20 C -0.026 4.026 21 C -0.176 4.176 22 C -0.207 4.207 23 C -0.212 4.212 24 N -0.179 5.179 25 C -0.117 4.117 26 C -0.154 4.154 27 C -0.161 4.161 28 C -0.162 4.162 29 C -0.155 4.155 30 H 0.064 0.936 31 H 0.220 0.780 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.242 0.758 35 H 0.246 0.754 36 H 0.115 0.885 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.371 -16.289 10.169 19.694 hybrid contribution -0.346 1.247 0.071 1.296 sum -4.717 -15.042 10.240 18.798 Atomic orbital electron populations 1.69682 1.05082 1.25535 1.57539 1.24734 0.95449 0.97579 1.03106 0.86293 0.78502 0.83746 0.77786 1.21285 1.21771 1.21365 1.19167 0.90895 0.84206 1.42843 0.91320 1.42302 1.06033 0.99635 1.89312 1.21018 0.93188 0.85820 0.98453 1.21521 0.90773 0.93913 0.90564 0.88063 1.45559 1.04870 1.72145 1.11341 1.16640 0.82113 0.76122 0.86033 1.90813 1.77410 1.51259 1.22061 1.21875 0.93356 1.10878 0.91862 1.25259 0.95107 1.00916 0.85413 1.84356 1.38385 1.69418 1.16275 1.26060 0.78995 1.00957 0.95522 1.19653 1.05041 0.96716 0.81237 1.22162 1.04886 0.96235 0.94269 1.23094 0.91433 1.03205 1.02967 1.23019 1.00663 1.03493 0.94048 1.70758 1.28758 1.16654 1.01700 1.22087 0.96000 0.94137 0.99428 1.22395 0.98894 0.95985 0.98113 1.22489 0.96347 0.96403 1.00901 1.22351 0.96222 0.99096 0.98489 1.22158 0.99619 0.96065 0.97678 0.93605 0.77967 0.96280 0.95017 0.75822 0.75408 0.88458 0.87429 0.87335 0.88270 0.88418 0.88552 0.88527 0.90822 0.90866 0.91364 0.91853 0.91815 0.92273 0.91655 0.92386 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.40 13.06 55.49 0.72 -28.67 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -19.32 5.43 -59.91 -0.33 -19.65 16 10 C 0.14 2.96 5.60 -4.04 -0.02 2.94 16 11 C 0.14 2.39 1.71 -67.93 -0.12 2.28 16 12 H 0.10 2.01 6.91 -51.92 -0.36 1.65 16 13 N -0.69 -12.24 4.02 -54.88 -0.22 -12.46 16 14 C 0.61 11.49 7.10 -12.52 -0.09 11.40 16 15 O -0.54 -11.50 16.22 5.27 0.09 -11.41 16 16 C -0.06 -1.00 6.99 -83.02 -0.58 -1.58 16 17 C 0.01 0.09 11.95 29.96 0.36 0.45 16 18 O -0.20 -2.61 10.73 6.52 0.07 -2.54 16 19 C 0.19 2.52 7.51 -13.08 -0.10 2.42 16 20 C 0.01 0.10 6.12 -27.88 -0.17 -0.07 16 21 C -0.16 -1.50 5.72 -90.62 -0.52 -2.02 16 22 C -0.17 -1.58 10.18 -26.70 -0.27 -1.85 16 23 C -0.18 -1.31 10.26 -26.69 -0.27 -1.58 16 24 N -0.45 -7.02 11.07 -7.65 -0.08 -7.11 16 25 C -0.10 -1.32 2.71 -89.50 -0.24 -1.56 16 26 C -0.12 -1.45 5.32 -25.07 -0.13 -1.58 16 27 C -0.12 -1.32 6.91 -24.74 -0.17 -1.49 16 28 C -0.12 -1.40 6.83 -25.07 -0.17 -1.58 16 29 C -0.12 -1.52 6.24 -25.61 -0.16 -1.68 16 30 H 0.25 7.78 8.31 -40.82 -0.34 7.44 16 31 H 0.39 11.15 7.31 -40.82 -0.30 10.85 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.03 0.65 7.17 -51.93 -0.37 0.28 16 34 H 0.41 6.97 8.57 -40.82 -0.35 6.62 16 35 H 0.23 2.61 8.06 -52.49 -0.42 2.19 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.11 0.84 7.88 -51.93 -0.41 0.43 16 38 H 0.11 1.22 8.07 -51.93 -0.42 0.80 16 39 H 0.10 0.85 8.03 -51.93 -0.42 0.43 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.96 8.14 -51.94 -0.42 0.54 16 44 H 0.07 1.00 7.52 -51.93 -0.39 0.61 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.07 1.00 6.88 -51.93 -0.36 0.64 16 LS Contribution 418.26 15.07 6.30 6.30 Total: -1.00 -34.68 418.26 -9.79 -44.47 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -8.41 Total: 16.09 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.91 Total: -3.07 kcal Atomic # 7 Polarization: -67.98 SS G_CDS: 0.09 Total: -67.89 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.16 Total: -13.96 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.68 -9.79 -44.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724104531.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.110 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds