Wall clock time and date at job start Wed Apr 1 2020 04:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00038 * 2 1 4 4 H 1.48499 * 109.47199 * 240.00446 * 3 2 1 5 5 H 1.48493 * 109.47035 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46866 * 120.00534 * 3 2 1 7 7 C 1.38809 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00310 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99896 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47148 * 179.97438 * 10 9 7 12 12 H 1.09011 * 109.46639 * 65.00167 * 11 10 9 13 13 N 1.46498 * 109.47324 * 305.00384 * 11 10 9 14 14 C 1.34779 * 120.00115 * 124.66698 * 13 11 10 15 15 O 1.21606 * 120.00112 * 354.75921 * 14 13 11 16 16 C 1.47424 * 119.99792 * 174.75181 * 14 13 11 17 17 C 1.36093 * 126.44298 * 179.97438 * 16 14 13 18 18 O 1.34257 * 106.94511 * 180.29971 * 17 16 14 19 19 C 1.34047 * 108.22922 * 359.58090 * 18 17 16 20 20 C 1.50699 * 125.38435 * 180.16718 * 19 18 17 21 21 C 1.53007 * 109.46976 * 270.30816 * 20 19 18 22 22 C 1.52994 * 117.49809 * 243.74353 * 21 20 19 23 23 C 1.53003 * 117.49699 * 175.08353 * 21 20 19 24 24 N 1.29945 * 109.24289 * 0.43132 * 19 18 17 25 25 C 1.52998 * 109.47301 * 185.00162 * 11 10 9 26 26 C 1.54264 * 110.03030 * 301.46246 * 25 11 10 27 27 C 1.54896 * 104.19540 * 217.10672 * 26 25 11 28 28 C 1.54887 * 102.74972 * 37.94227 * 27 26 25 29 29 C 1.53878 * 110.03059 * 184.29804 * 25 11 10 30 30 H 0.97001 * 120.00067 * 359.97438 * 1 2 3 31 31 H 0.96996 * 120.00180 * 359.97438 * 9 7 2 32 32 H 1.09006 * 109.47066 * 60.00078 * 10 9 7 33 33 H 1.08995 * 109.47087 * 300.00036 * 10 9 7 34 34 H 0.96997 * 120.00370 * 304.67110 * 13 11 10 35 35 H 1.07997 * 126.52945 * 0.04330 * 17 16 14 36 36 H 1.09001 * 109.47074 * 30.30724 * 20 19 18 37 37 H 1.08997 * 109.47426 * 150.30635 * 20 19 18 38 38 H 1.08999 * 115.54985 * 29.41892 * 21 20 19 39 39 H 1.08997 * 117.50250 * 359.97438 * 22 21 20 40 40 H 1.09002 * 117.50199 * 145.02198 * 22 21 20 41 41 H 1.08999 * 117.49687 * 214.98312 * 23 21 20 42 42 H 1.09003 * 117.49918 * 359.97438 * 23 21 20 43 43 H 1.08989 * 110.01710 * 62.90599 * 25 11 10 44 44 H 1.08998 * 110.49217 * 335.78317 * 26 25 11 45 45 H 1.09006 * 110.48865 * 98.43030 * 26 25 11 46 46 H 1.09001 * 110.75155 * 279.62914 * 27 26 25 47 47 H 1.08996 * 110.91336 * 156.33476 * 27 26 25 48 48 H 1.08995 * 110.48763 * 203.37946 * 28 27 26 49 49 H 1.08998 * 110.59519 * 80.79306 * 28 27 26 50 50 H 1.09001 * 110.02906 * 238.56368 * 29 25 11 51 51 H 1.08993 * 110.03389 * 0.02562 * 29 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.0639 -4.8197 -0.0008 12 1 0.4966 -4.8134 -0.9316 13 7 0.1456 -4.6763 1.1317 14 6 -1.1856 -4.6575 0.9217 15 8 -1.6223 -4.6634 -0.2133 16 6 -2.1123 -4.6299 2.0679 17 6 -3.4717 -4.6085 2.0081 18 8 -3.9187 -4.5807 3.2738 19 6 -2.8581 -4.5942 4.0934 20 6 -2.9185 -4.5757 5.5991 21 6 -2.9156 -3.1272 6.0919 22 6 -1.7243 -2.6707 6.9363 23 6 -3.0889 -2.8915 7.5937 24 7 -1.7693 -4.6202 3.3846 25 6 1.8248 -6.1412 0.1238 26 6 2.8225 -6.2885 -1.0435 27 6 2.7820 -7.7977 -1.3896 28 6 1.2845 -8.1497 -1.2096 29 6 0.8468 -7.3245 0.0182 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 0.0002 32 1 2.6854 -3.7149 0.8879 33 1 2.6840 -3.7141 -0.8921 34 1 0.4956 -4.5949 2.0326 35 1 -4.0759 -4.6091 1.1130 36 1 -3.8306 -5.0710 5.9322 37 1 -2.0524 -5.0990 6.0040 38 1 -3.3602 -2.3990 5.4136 39 1 -0.9428 -3.4024 7.1412 40 1 -1.3852 -1.6420 6.8139 41 1 -3.6472 -2.0081 7.9034 42 1 -3.2054 -3.7684 8.2306 43 1 2.3545 -6.1784 1.0756 44 1 2.5011 -5.6925 -1.8977 45 1 3.8242 -5.9961 -0.7285 46 1 3.3993 -8.3696 -0.6967 47 1 3.0983 -7.9696 -2.4184 48 1 1.1637 -9.2154 -1.0158 49 1 0.7130 -7.8559 -2.0901 50 1 0.9027 -7.9365 0.9184 51 1 -0.1697 -6.9574 -0.1223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724104531.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:17 Heat of formation + Delta-G solvation = -20.203860 kcal Electronic energy + Delta-G solvation = -31074.852691 eV Core-core repulsion = 26975.129806 eV Total energy + Delta-G solvation = -4099.722885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.48100 -41.08340 -39.16631 -38.48619 -36.89636 -35.96335 -35.22631 -33.14868 -32.73012 -31.09556 -29.56195 -28.93634 -27.81082 -25.84181 -24.72799 -23.23084 -23.11340 -22.62353 -21.83402 -21.46975 -21.24491 -20.69607 -19.36593 -18.98985 -17.84986 -17.66383 -17.33573 -16.80253 -16.70377 -16.45235 -16.17911 -15.70227 -15.34456 -15.21034 -15.11436 -14.95315 -14.80921 -14.53575 -14.23810 -13.98605 -13.76460 -13.64795 -13.02602 -12.84504 -12.77082 -12.64455 -12.35422 -12.32979 -12.25529 -12.20430 -11.94629 -11.92190 -11.89049 -11.83666 -11.65820 -11.47680 -11.42591 -11.32120 -11.22600 -10.95404 -10.89655 -10.17440 -9.90489 -9.02477 -7.95508 -5.25795 0.04817 0.93952 1.43021 1.47431 1.52383 1.53364 2.05803 2.27493 2.53531 2.78073 2.92160 3.37419 3.51332 3.65962 3.73192 3.76009 3.79203 3.83011 3.99930 4.10394 4.13420 4.18201 4.26394 4.35242 4.44253 4.55150 4.58695 4.59880 4.68279 4.69613 4.72977 4.74591 4.82160 4.84510 4.86060 4.90311 5.00738 5.02956 5.09239 5.10633 5.15138 5.25391 5.27602 5.30161 5.31903 5.44724 5.45621 5.51712 5.58853 6.23758 6.30344 6.59111 7.12464 7.30214 8.06329 8.29683 9.27708 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.005885 B = 0.004206 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4756.606595 B = 6656.022393 C =10050.330300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.276 1.276 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.143 3.857 11 C 0.148 3.852 12 H 0.072 0.928 13 N -0.686 5.686 14 C 0.601 3.399 15 O -0.574 6.574 16 C -0.096 4.096 17 C 0.020 3.980 18 O -0.192 6.192 19 C 0.203 3.797 20 C 0.016 3.984 21 C -0.172 4.172 22 C -0.188 4.188 23 C -0.147 4.147 24 N -0.474 5.474 25 C -0.088 4.088 26 C -0.118 4.118 27 C -0.115 4.115 28 C -0.123 4.123 29 C -0.114 4.114 30 H 0.249 0.751 31 H 0.370 0.630 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.409 0.591 35 H 0.251 0.749 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.085 0.915 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.053 0.947 50 H 0.071 0.929 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.837 -17.880 12.495 22.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.016 3.984 11 C 0.043 3.957 12 H 0.091 0.909 13 N -0.334 5.334 14 C 0.387 3.613 15 O -0.454 6.454 16 C -0.215 4.215 17 C -0.054 4.054 18 O -0.078 6.078 19 C -0.007 4.007 20 C -0.022 4.022 21 C -0.191 4.191 22 C -0.225 4.225 23 C -0.184 4.184 24 N -0.204 5.204 25 C -0.108 4.108 26 C -0.156 4.156 27 C -0.152 4.152 28 C -0.160 4.160 29 C -0.151 4.151 30 H 0.057 0.943 31 H 0.202 0.798 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.245 0.755 35 H 0.267 0.733 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.140 0.860 43 H 0.105 0.895 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.097 0.903 49 H 0.072 0.928 50 H 0.090 0.910 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.346 -17.811 11.946 21.706 hybrid contribution -0.655 1.689 -0.438 1.864 sum -4.001 -16.122 11.508 20.208 Atomic orbital electron populations 1.69878 1.06906 1.25924 1.59518 1.25628 0.96296 1.01322 1.03676 0.85168 0.77117 0.78867 0.78345 1.20166 1.22370 1.20109 1.19646 0.91567 0.85245 1.41278 0.90238 1.42527 1.05519 1.01161 1.89361 1.21205 0.93672 0.84618 0.98887 1.21380 0.89945 0.94896 0.89439 0.90950 1.45539 1.04764 1.71686 1.11385 1.16978 0.82619 0.75368 0.86305 1.90774 1.77975 1.53088 1.23561 1.21743 0.94019 1.13735 0.91968 1.25666 0.94515 0.98855 0.86410 1.84397 1.38357 1.69214 1.15880 1.26974 0.78234 0.98541 0.96915 1.19946 1.07377 0.96669 0.78200 1.22104 1.05431 0.96101 0.95455 1.23152 0.92521 1.02596 1.04218 1.23118 0.98378 1.04517 0.92393 1.70716 1.30100 1.18252 1.01310 1.22053 0.96074 0.91987 1.00707 1.22422 0.98814 0.97534 0.96863 1.22464 0.95910 0.94728 1.02110 1.22353 0.96647 0.99902 0.97115 1.22108 0.97797 0.96008 0.99232 0.94268 0.79820 0.95143 0.94307 0.75501 0.73310 0.85240 0.85923 0.89685 0.87491 0.90043 0.88104 0.85977 0.89504 0.92596 0.90290 0.90068 0.90673 0.90311 0.92795 0.90980 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.30 13.06 21.65 0.28 -63.01 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.98 47.96 29.55 68.60 2.03 49.99 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 5 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.74 -40.52 5.43 -343.44 -1.87 -42.39 16 10 C 0.14 5.99 5.60 86.38 0.48 6.47 16 11 C 0.15 5.35 1.71 44.99 0.08 5.43 16 12 H 0.07 3.06 6.91 -2.38 -0.02 3.05 16 13 N -0.69 -25.37 4.02 -445.80 -1.79 -27.16 16 14 C 0.60 24.05 7.10 86.66 0.62 24.66 16 15 O -0.57 -26.14 16.22 -4.05 -0.07 -26.21 16 16 C -0.10 -3.34 6.99 40.41 0.28 -3.05 16 17 C 0.02 0.57 11.95 67.32 0.80 1.37 16 18 O -0.19 -4.95 10.73 0.40 0.00 -4.95 16 19 C 0.20 5.14 7.51 88.39 0.66 5.81 16 20 C 0.02 0.24 6.12 29.85 0.18 0.43 16 21 C -0.17 -3.10 5.72 -10.79 -0.06 -3.17 16 22 C -0.19 -3.35 10.18 30.62 0.31 -3.04 16 23 C -0.15 -1.86 10.26 30.62 0.31 -1.55 16 24 N -0.47 -15.04 11.07 -293.03 -3.24 -18.28 16 25 C -0.09 -2.37 2.71 -10.07 -0.03 -2.40 16 26 C -0.12 -2.82 5.32 31.67 0.17 -2.65 16 27 C -0.11 -2.18 6.91 31.89 0.22 -1.96 16 28 C -0.12 -2.60 6.83 31.67 0.22 -2.39 16 29 C -0.11 -2.87 6.24 31.32 0.20 -2.68 16 30 H 0.25 15.72 8.31 -92.71 -0.77 14.95 16 31 H 0.37 22.35 7.31 -92.71 -0.68 21.67 16 32 H 0.03 1.22 8.14 -2.38 -0.02 1.21 16 33 H 0.04 1.59 7.17 -2.39 -0.02 1.57 16 34 H 0.41 14.51 8.57 -92.71 -0.79 13.71 16 35 H 0.25 5.77 8.06 -2.91 -0.02 5.75 16 36 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.12 1.61 7.88 -2.39 -0.02 1.59 16 38 H 0.08 1.94 8.07 -2.39 -0.02 1.92 16 39 H 0.11 1.70 8.03 -2.39 -0.02 1.69 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.06 1.52 7.52 -2.39 -0.02 1.51 16 45 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 46 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.04 1.20 6.88 -2.39 -0.02 1.19 16 Total: -1.00 -77.78 418.26 0.58 -77.20 By element: Atomic # 1 Polarization: 51.76 SS G_CDS: -0.53 Total: 51.23 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.75 Total: 3.56 kcal Atomic # 7 Polarization: -144.22 SS G_CDS: -6.62 Total: -150.84 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.06 Total: -31.15 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -77.78 0.58 -77.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724104531.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.998 kcal (2) G-P(sol) polarization free energy of solvation -77.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds