Wall clock time and date at job start Wed Apr 1 2020 05:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 C 1.50701 * 109.47402 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99514 * 359.97438 * 10 9 8 12 12 N 1.34770 * 119.99827 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99562 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.47014 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.46724 * 294.99440 * 14 13 12 16 16 C 1.53004 * 109.47068 * 175.00237 * 14 13 12 17 17 N 1.46895 * 109.47066 * 54.99921 * 14 13 12 18 18 C 1.46904 * 110.99547 * 205.00016 * 17 14 13 19 19 C 1.50706 * 109.46976 * 179.97438 * 18 17 14 20 20 O 1.21295 * 119.99599 * 0.02562 * 19 18 17 21 21 N 1.34767 * 120.00187 * 179.97438 * 19 18 17 22 22 C 1.37103 * 120.00340 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99645 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00280 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99684 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00029 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46785 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.46809 * 120.00305 * 26 24 22 29 29 H 1.48498 * 109.46981 * 240.00547 * 26 24 22 30 30 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 31 31 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 32 32 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 33 33 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 34 34 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 35 35 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 36 36 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 37 37 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 38 38 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 39 39 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 40 40 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 41 41 H 0.96994 * 120.00421 * 359.97438 * 12 10 9 42 42 H 1.08997 * 109.47516 * 299.99653 * 13 12 10 43 43 H 1.08999 * 109.47480 * 59.99839 * 13 12 10 44 44 H 1.08998 * 109.47421 * 59.99408 * 16 14 13 45 45 H 1.08995 * 109.46883 * 180.02562 * 16 14 13 46 46 H 1.09003 * 109.46697 * 299.99219 * 16 14 13 47 47 H 1.00899 * 110.99708 * 328.95000 * 17 14 13 48 48 H 1.08991 * 109.47400 * 299.99667 * 18 17 14 49 49 H 1.08995 * 109.47321 * 60.00561 * 18 17 14 50 50 H 0.97005 * 120.00336 * 0.02562 * 21 19 18 51 51 H 0.97009 * 119.99726 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 6 0.3277 -4.1863 -1.4365 11 8 0.1032 -4.7568 -0.3900 12 7 -0.0961 -4.7196 -2.5993 13 6 -0.8295 -5.9878 -2.5992 14 6 -1.1923 -6.3673 -4.0363 15 1 -1.8876 -5.6322 -4.4417 16 6 -1.8475 -7.7499 -4.0488 17 7 0.0252 -6.3950 -4.8577 18 6 -0.2897 -6.1635 -6.2738 19 6 0.9810 -6.1983 -7.0832 20 8 2.0443 -6.3969 -6.5344 21 7 0.9359 -6.0097 -8.4169 22 6 2.0918 -6.0419 -9.1533 23 1 3.0386 -6.2187 -8.6647 24 6 2.0452 -5.8481 -10.5284 25 7 0.8931 -5.6334 -11.1230 26 14 3.6202 -5.8926 -11.5319 27 1 4.7732 -6.1498 -10.6321 28 1 3.5316 -6.9754 -12.5442 29 1 3.8076 -4.5885 -12.2170 30 1 -0.3633 0.0004 1.0276 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6582 2.1327 -0.0004 34 1 4.1203 2.1329 0.0001 35 1 5.3517 0.0002 0.0005 36 1 4.1207 -2.1321 0.0064 37 1 2.0693 -3.2822 0.4356 38 1 0.5336 -2.3956 0.5893 39 1 0.4571 -2.1013 -1.8716 40 1 1.9929 -2.9879 -2.0253 41 1 0.0838 -4.2636 -3.4362 42 1 -0.2058 -6.7683 -2.1634 43 1 -1.7409 -5.8804 -2.0110 44 1 -2.7509 -7.7294 -3.4393 45 1 -2.1055 -8.0204 -5.0726 46 1 -1.1523 -8.4851 -3.6434 47 1 0.7020 -5.7253 -4.5236 48 1 -0.9673 -6.9407 -6.6270 49 1 -0.7647 -5.1889 -6.3857 50 1 0.0855 -5.8513 -8.8558 51 1 0.8606 -5.4977 -12.0830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731621059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:46 Heat of formation + Delta-G solvation = -87.759987 kcal Electronic energy + Delta-G solvation = -29334.003233 eV Core-core repulsion = 25231.350895 eV Total energy + Delta-G solvation = -4102.652339 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.11304 -40.36403 -40.07907 -38.22955 -35.98224 -35.19427 -34.95101 -33.33938 -33.26966 -32.13722 -30.78876 -28.19635 -27.98380 -27.30883 -25.79399 -24.94051 -22.84712 -21.69841 -21.61206 -21.19588 -21.02288 -19.91950 -18.47192 -17.78148 -17.29876 -17.09400 -17.00118 -16.78483 -16.60827 -16.32548 -15.95950 -15.76897 -15.57164 -15.24808 -14.92235 -14.54010 -14.31961 -14.27458 -14.01052 -13.76584 -13.66276 -13.51115 -13.45299 -13.28711 -13.25959 -13.01402 -12.92865 -12.80731 -12.64857 -12.55213 -12.39401 -12.21984 -12.11617 -11.87976 -11.75408 -11.70116 -11.51103 -10.96102 -10.34187 -10.15731 -10.01014 -9.69189 -9.45447 -9.37161 -8.46823 -5.95085 0.43615 0.49626 1.36518 1.42389 1.56018 1.59450 2.05334 2.14430 2.29071 2.85023 2.88315 3.20945 3.48380 3.61815 3.73102 3.89690 4.01060 4.06038 4.11619 4.16682 4.23709 4.26964 4.30830 4.39633 4.45794 4.48254 4.57908 4.60074 4.61760 4.64817 4.80407 4.81371 4.85432 4.93196 4.96804 4.99412 5.05232 5.06781 5.22890 5.30997 5.37373 5.41680 5.46483 5.61536 5.64440 5.77111 5.88461 6.09383 6.15451 6.35921 6.41934 6.60357 7.13297 7.16639 7.56926 8.12209 8.70653 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008462 B = 0.002135 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3308.279284 B =13112.827374 C =15576.980042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.128 4.128 5 C -0.135 4.135 6 C -0.127 4.127 7 C -0.095 4.095 8 C -0.057 4.057 9 C -0.131 4.131 10 C 0.515 3.485 11 O -0.579 6.579 12 N -0.726 5.726 13 C 0.123 3.877 14 C 0.078 3.922 15 H 0.070 0.930 16 C -0.138 4.138 17 N -0.681 5.681 18 C 0.065 3.935 19 C 0.437 3.563 20 O -0.624 6.624 21 N -0.572 5.572 22 C -0.331 4.331 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.125 0.875 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.407 0.593 42 H 0.059 0.941 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.343 0.657 48 H 0.104 0.896 49 H 0.073 0.927 50 H 0.397 0.603 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 12.443 19.935 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.146 4.146 5 C -0.153 4.153 6 C -0.145 4.145 7 C -0.095 4.095 8 C -0.095 4.095 9 C -0.171 4.171 10 C 0.303 3.697 11 O -0.458 6.458 12 N -0.379 5.379 13 C -0.001 4.001 14 C -0.031 4.031 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.316 5.316 18 C -0.068 4.068 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.210 5.210 22 C -0.461 4.461 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.199 1.199 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.143 0.857 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.243 0.757 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.164 0.836 48 H 0.122 0.878 49 H 0.091 0.909 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.228 11.241 20.775 24.193 hybrid contribution 0.473 0.902 -1.320 1.668 sum -4.755 12.143 19.455 23.421 Atomic orbital electron populations 1.20909 0.90199 1.03492 1.02955 1.20045 0.96987 0.92588 0.99561 1.21320 0.94612 0.98030 1.00716 1.21441 0.94631 0.98753 0.99744 1.21398 1.00832 0.92531 1.00537 1.21289 0.93886 0.98921 1.00404 1.19810 0.93833 0.94581 1.01297 1.20206 1.00310 0.93573 0.95388 1.21685 1.01779 0.94096 0.99502 1.21058 0.78422 0.87265 0.82945 1.90684 1.58444 1.64093 1.32622 1.46076 1.57823 1.24498 1.09513 1.21536 0.96939 0.85141 0.96517 1.21858 0.91005 0.99208 0.91041 0.91251 1.21754 1.00352 0.94901 1.02595 1.60115 1.12461 1.58279 1.00783 1.21614 0.94006 1.02432 0.88712 1.20903 0.91622 0.82230 0.82812 1.90505 1.33458 1.55559 1.71490 1.41933 1.09729 1.63225 1.06093 1.19671 0.88205 1.47999 0.90223 0.90439 1.26002 1.01505 0.96295 0.97402 1.69672 1.25868 1.48794 1.11709 0.84906 0.77547 0.78324 0.77790 1.19880 1.19745 1.19525 0.90657 0.90304 0.91245 0.84396 0.84321 0.84748 0.85657 0.91479 0.90408 0.86790 0.87878 0.75688 0.92236 0.89692 0.90009 0.92277 0.92874 0.83617 0.87761 0.90884 0.76918 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.22 71.23 0.66 -0.85 16 2 C -0.09 -1.52 5.88 -19.87 -0.12 -1.63 16 3 C -0.13 -1.96 9.70 22.27 0.22 -1.74 16 4 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 5 C -0.14 -2.23 10.05 22.27 0.22 -2.00 16 6 C -0.13 -2.33 9.68 22.27 0.22 -2.11 16 7 C -0.10 -1.74 5.13 -19.87 -0.10 -1.85 16 8 C -0.06 -1.06 3.94 29.85 0.12 -0.95 16 9 C -0.13 -2.26 5.49 29.85 0.16 -2.10 16 10 C 0.52 11.62 7.83 87.66 0.69 12.31 16 11 O -0.58 -17.26 15.98 -3.03 -0.05 -17.31 16 12 N -0.73 -14.61 4.99 -463.06 -2.31 -16.92 16 13 C 0.12 2.55 5.31 86.38 0.46 3.01 16 14 C 0.08 1.60 2.81 44.92 0.13 1.73 16 15 H 0.07 1.19 7.80 -2.39 -0.02 1.18 16 16 C -0.14 -2.65 9.42 71.98 0.68 -1.97 16 17 N -0.68 -19.63 5.93 -495.56 -2.94 -22.57 16 18 C 0.06 2.02 5.97 85.56 0.51 2.53 16 19 C 0.44 19.94 7.82 87.66 0.69 20.62 16 20 O -0.62 -33.68 15.78 -3.07 -0.05 -33.73 16 21 N -0.57 -28.45 5.29 -306.98 -1.62 -30.07 16 22 C -0.33 -18.47 9.68 84.04 0.81 -17.66 16 23 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 25 N -0.92 -48.65 13.05 21.66 0.28 -48.36 16 26 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 29 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 32 H 0.07 0.87 5.43 -2.39 -0.01 0.86 16 33 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.07 1.41 8.01 -2.39 -0.02 1.39 16 38 H 0.08 1.49 6.94 -2.39 -0.02 1.47 16 39 H 0.11 1.53 6.91 -2.39 -0.02 1.51 16 40 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.41 7.12 7.37 -92.71 -0.68 6.43 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.18 7.45 -2.39 -0.02 1.16 16 46 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.34 10.32 6.41 -89.69 -0.58 9.74 16 48 H 0.10 2.98 7.43 -2.39 -0.02 2.97 16 49 H 0.07 1.89 8.05 -2.39 -0.02 1.88 16 50 H 0.40 18.62 7.90 -92.70 -0.73 17.89 16 51 H 0.28 13.72 8.31 -92.70 -0.77 12.95 16 Total: -1.00 -72.02 419.70 0.34 -71.68 By element: Atomic # 1 Polarization: 48.47 SS G_CDS: -1.03 Total: 47.44 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.02 Total: 5.46 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -6.59 Total: -117.93 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -0.10 Total: -51.04 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -72.02 0.34 -71.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731621059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.076 kcal (2) G-P(sol) polarization free energy of solvation -72.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds