Wall clock time and date at job start Wed Apr 1 2020 05:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 110.44042 * 2 1 4 4 O 1.21282 * 120.00022 * 236.12237 * 3 2 1 5 5 N 1.34782 * 119.99959 * 56.11524 * 3 2 1 6 6 C 1.47154 * 120.68023 * 5.38267 * 5 3 2 7 7 C 1.53888 * 108.04019 * 132.63989 * 6 5 3 8 8 H 1.08999 * 112.12058 * 182.01245 * 7 6 5 9 9 C 1.54544 * 107.80876 * 306.64458 * 7 6 5 10 10 C 1.54253 * 104.94266 * 88.97085 * 9 7 6 11 11 C 1.54549 * 104.93794 * 359.97438 * 10 9 7 12 12 H 1.08998 * 112.20432 * 146.47475 * 11 10 9 13 13 C 1.47147 * 120.68108 * 185.10337 * 5 3 2 14 14 N 1.48726 * 104.31937 * 24.74737 * 11 10 9 15 15 C 1.46899 * 111.00594 * 78.35669 * 14 11 10 16 16 C 1.50703 * 109.46668 * 75.20790 * 15 14 11 17 17 O 1.21288 * 120.00549 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99728 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99962 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00166 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00114 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99930 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00055 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47146 * 90.00113 * 23 21 19 25 25 H 1.48499 * 109.46859 * 210.00020 * 23 21 19 26 26 H 1.48500 * 109.47141 * 329.99962 * 23 21 19 27 27 C 1.51109 * 110.38475 * 122.34517 * 2 1 3 28 28 C 1.30527 * 111.10061 * 102.37584 * 27 2 1 29 29 C 1.51099 * 111.10783 * 359.97438 * 28 27 2 30 30 C 1.54634 * 110.38635 * 237.64738 * 2 1 3 31 31 H 1.09006 * 109.46953 * 304.02970 * 1 2 3 32 32 H 1.08996 * 109.46688 * 64.02578 * 1 2 3 33 33 H 1.08995 * 109.47699 * 184.02872 * 1 2 3 34 34 H 1.09006 * 109.74369 * 252.27229 * 6 5 3 35 35 H 1.08992 * 109.75021 * 12.99631 * 6 5 3 36 36 H 1.09002 * 110.34920 * 207.83944 * 9 7 6 37 37 H 1.08998 * 110.34933 * 330.10256 * 9 7 6 38 38 H 1.09006 * 110.34878 * 241.13185 * 10 9 7 39 39 H 1.09003 * 110.34843 * 118.86484 * 10 9 7 40 40 H 1.09001 * 109.74759 * 347.00175 * 13 5 3 41 41 H 1.09002 * 109.74341 * 107.72705 * 13 5 3 42 42 H 1.08991 * 109.47589 * 195.20752 * 15 14 11 43 43 H 1.09003 * 109.46978 * 315.21450 * 15 14 11 44 44 H 0.97008 * 120.00372 * 359.97438 * 18 16 15 45 45 H 0.97003 * 120.00222 * 180.02562 * 22 21 19 46 46 H 1.07999 * 124.45029 * 282.63759 * 27 2 1 47 47 H 1.08002 * 124.44959 * 180.02562 * 28 27 2 48 48 H 1.09005 * 110.38881 * 135.24980 * 29 28 27 49 49 H 1.09000 * 110.39397 * 257.51327 * 29 28 27 50 50 H 1.08999 * 111.03744 * 147.79365 * 30 2 1 51 51 H 1.08998 * 111.07077 * 23.87525 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0563 1.4121 0.0000 4 8 2.8167 1.7759 -0.8720 5 7 1.6818 2.2708 0.9690 6 6 0.8554 1.8150 2.0980 7 6 1.4883 2.3452 3.3966 8 1 0.9455 2.0152 4.2823 9 6 2.9719 1.9125 3.4103 10 6 3.7250 3.0512 2.6922 11 6 2.6303 4.0719 2.3070 12 1 2.9938 5.0989 2.3425 13 6 2.0961 3.6820 0.9229 14 7 1.5383 3.8274 3.2865 15 6 1.8483 4.4410 4.5848 16 6 1.6503 5.9323 4.4955 17 8 1.2873 6.4346 3.4529 18 7 1.8777 6.7080 5.5739 19 6 1.6982 8.0647 5.4926 20 1 1.3741 8.5119 4.5645 21 6 1.9321 8.8644 6.6046 22 7 2.3260 8.3203 7.7341 23 14 1.6868 10.7130 6.4940 24 1 0.2864 11.0490 6.8563 25 1 2.6171 11.3926 7.4308 26 1 1.9618 11.1667 5.1070 27 6 2.0563 -0.7578 1.1967 28 6 2.4647 -1.9498 0.8556 29 6 2.2782 -2.1858 -0.6251 30 6 2.0686 -0.7757 -1.2245 31 1 -0.3633 0.5751 0.8517 32 1 -0.3632 0.4501 -0.9238 33 1 -0.3634 -1.0250 0.0722 34 1 -0.1568 2.2064 1.9951 35 1 0.8292 0.7256 2.1191 36 1 3.3275 1.8105 4.4356 37 1 3.0982 0.9746 2.8695 38 1 4.2213 2.6729 1.7985 39 1 4.4506 3.5088 3.3647 40 1 2.8801 3.8115 0.1767 41 1 1.2406 4.3090 0.6717 42 1 1.1861 4.0316 5.3475 43 1 2.8838 4.2272 4.8497 44 1 2.1685 6.3063 6.4077 45 1 2.4889 8.8785 8.5105 46 1 2.0865 -0.3664 2.2028 47 1 2.8804 -2.6727 1.5419 48 1 3.1677 -2.6504 -1.0506 49 1 1.4027 -2.8104 -0.8029 50 1 3.0118 -0.3534 -1.5712 51 1 1.3333 -0.7978 -2.0288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732032983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:19 Heat of formation + Delta-G solvation = -19.399838 kcal Electronic energy + Delta-G solvation = -32324.252879 eV Core-core repulsion = 28224.564859 eV Total energy + Delta-G solvation = -4099.688020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53658 -39.86900 -38.01065 -37.54812 -34.78570 -33.86292 -32.18840 -31.35056 -31.08776 -30.83851 -29.26876 -27.91997 -26.12375 -25.35954 -24.76899 -23.88102 -21.83461 -20.73485 -20.03071 -19.43871 -19.30490 -18.58286 -17.82768 -16.91898 -16.43141 -16.11720 -15.74688 -15.57169 -15.00438 -14.88214 -14.59170 -14.31938 -14.11534 -14.02511 -13.61350 -13.52648 -13.34474 -13.27234 -12.75402 -12.61196 -12.45508 -12.33028 -12.22315 -11.97395 -11.85100 -11.60739 -11.55951 -11.48348 -11.35249 -11.18993 -11.05577 -10.83348 -10.80244 -10.76970 -10.39511 -10.38730 -10.21415 -9.79740 -9.48913 -9.23217 -8.83241 -8.39928 -8.07392 -7.95444 -6.41477 -3.82089 1.82077 2.62674 2.96664 3.17890 3.26508 3.32282 3.84878 3.93413 4.11745 4.21167 4.22257 4.46525 4.59089 4.68952 4.71069 4.84925 4.91797 4.98266 5.00447 5.09445 5.16035 5.20243 5.25129 5.29745 5.33292 5.37454 5.45029 5.51560 5.56074 5.59351 5.68915 5.74606 5.79049 5.81067 5.83835 5.84872 5.88658 5.93822 5.99855 6.03488 6.13160 6.17470 6.22830 6.28924 6.48146 6.55973 6.99778 7.14840 7.44417 7.55432 8.06679 8.15144 8.62268 9.18812 9.55211 10.07116 10.76361 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029249 B = 0.002368 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.060535 B =11819.823361 C =12113.577476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C 0.528 3.472 4 O -0.545 6.545 5 N -0.599 5.599 6 C 0.108 3.892 7 C 0.042 3.958 8 H 0.105 0.895 9 C -0.148 4.148 10 C -0.149 4.149 11 C 0.061 3.939 12 H 0.114 0.886 13 C 0.127 3.873 14 N -0.475 5.475 15 C 0.035 3.965 16 C 0.445 3.555 17 O -0.576 6.576 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.168 4.168 28 C -0.148 4.148 29 C -0.103 4.103 30 C -0.106 4.106 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.052 0.948 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.135 0.865 47 H 0.128 0.872 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.916 -22.756 -9.755 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.060 4.060 3 C 0.316 3.684 4 O -0.422 6.422 5 N -0.331 5.331 6 C -0.015 4.015 7 C -0.068 4.068 8 H 0.123 0.877 9 C -0.187 4.187 10 C -0.188 4.188 11 C -0.049 4.049 12 H 0.132 0.868 13 C 0.005 3.995 14 N -0.197 5.197 15 C -0.096 4.096 16 C 0.230 3.770 17 O -0.460 6.460 18 N -0.203 5.203 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.186 4.186 28 C -0.166 4.166 29 C -0.140 4.140 30 C -0.144 4.144 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.153 0.847 47 H 0.146 0.854 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.108 0.892 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.254 -21.849 -10.928 24.461 hybrid contribution 0.862 0.410 1.268 1.587 sum -0.392 -21.439 -9.660 23.518 Atomic orbital electron populations 1.22051 0.91695 1.03050 1.03453 1.20632 0.97193 0.92290 0.95874 1.20370 0.80334 0.86662 0.81037 1.90657 1.35705 1.78162 1.37698 1.48044 1.51713 1.09990 1.23342 1.22365 0.94704 0.99752 0.84659 1.23556 0.95553 0.89736 0.97925 0.87715 1.22919 0.95987 0.99158 1.00608 1.22886 0.98913 0.96345 1.00641 1.23307 0.89282 0.99986 0.92311 0.86825 1.21715 1.00905 0.80139 0.96723 1.65062 1.41554 1.05561 1.07524 1.21980 1.00290 0.95568 0.91807 1.19711 0.84665 0.87320 0.85268 1.90522 1.51116 1.74675 1.29692 1.41871 1.59641 1.07311 1.11496 1.19683 1.42600 0.81604 0.98774 0.87959 1.25249 0.97231 1.00637 0.94868 1.69609 1.46562 1.36634 1.01643 0.85872 0.78085 0.82154 0.78273 1.20419 1.20974 1.19438 1.23272 1.01115 0.96112 0.98084 1.23356 0.98720 0.97283 0.97225 1.21424 1.01991 0.97574 0.93009 1.22495 1.02763 0.93611 0.95515 0.90783 0.91800 0.91393 0.90342 0.88446 0.91563 0.91242 0.91153 0.91646 0.89183 0.90286 0.89442 0.92969 0.77579 0.91924 0.84744 0.85401 0.90860 0.90442 0.89247 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.15 37.16 0.30 -0.84 16 2 C -0.06 -0.54 0.56 -155.75 -0.09 -0.63 16 3 C 0.53 6.83 6.55 -10.98 -0.07 6.76 16 4 O -0.54 -8.95 14.93 5.56 0.08 -8.87 16 5 N -0.60 -7.44 2.25 -171.85 -0.39 -7.82 16 6 C 0.11 1.11 3.82 -3.22 -0.01 1.10 16 7 C 0.04 0.48 3.67 -65.44 -0.24 0.24 16 8 H 0.10 1.01 7.98 -51.93 -0.41 0.60 16 9 C -0.15 -1.61 5.69 -25.26 -0.14 -1.76 16 10 C -0.15 -1.96 5.47 -25.26 -0.14 -2.10 16 11 C 0.06 0.93 3.21 -65.68 -0.21 0.72 16 12 H 0.11 2.08 7.01 -51.93 -0.36 1.72 16 13 C 0.13 1.87 5.87 -3.48 -0.02 1.85 16 14 N -0.47 -7.33 4.56 -214.53 -0.98 -8.31 16 15 C 0.04 0.60 5.15 -4.97 -0.03 0.57 16 16 C 0.45 10.21 7.43 -10.99 -0.08 10.13 16 17 O -0.58 -15.19 14.94 5.55 0.08 -15.11 16 18 N -0.57 -14.11 5.29 -10.96 -0.06 -14.17 16 19 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 23 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.17 -1.39 7.87 -35.69 -0.28 -1.67 16 28 C -0.15 -1.08 10.77 -35.70 -0.38 -1.46 16 29 C -0.10 -0.72 6.81 -26.82 -0.18 -0.91 16 30 C -0.11 -0.97 6.02 -25.00 -0.15 -1.12 16 31 H 0.07 0.56 4.75 -51.93 -0.25 0.31 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.83 7.78 -51.93 -0.40 0.43 16 35 H 0.10 0.78 3.17 -51.93 -0.16 0.61 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.70 5.56 -51.93 -0.29 0.41 16 38 H 0.07 0.96 7.83 -51.93 -0.41 0.56 16 39 H 0.06 0.88 7.93 -51.93 -0.41 0.46 16 40 H 0.09 1.37 7.08 -51.93 -0.37 1.00 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.09 1.33 7.97 -51.93 -0.41 0.92 16 43 H 0.05 0.83 6.98 -51.93 -0.36 0.46 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.14 1.03 4.40 -52.49 -0.23 0.80 16 47 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 48 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.09 1.01 6.97 -51.93 -0.36 0.65 16 51 H 0.08 0.63 7.90 -51.93 -0.41 0.22 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -32.27 381.67 -9.41 -41.68 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -7.64 Total: 11.53 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.97 Total: 3.03 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.70 Total: -54.02 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.17 Total: -23.98 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.27 -9.41 -41.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732032983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.279 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds