Wall clock time and date at job start Wed Apr 1 2020 04:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00545 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00295 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00006 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.47426 * 125.64553 * 359.69111 * 9 7 2 11 11 C 1.55140 * 104.71884 * 155.81775 * 10 9 7 12 12 C 1.55167 * 101.48205 * 37.29810 * 11 10 9 13 13 H 1.08996 * 110.71743 * 82.69900 * 12 11 10 14 14 C 1.53000 * 110.86767 * 205.89724 * 12 11 10 15 15 C 1.52999 * 109.46947 * 180.02562 * 14 12 11 16 16 N 1.46498 * 109.47176 * 180.02562 * 15 14 12 17 17 C 1.34776 * 119.99936 * 180.02562 * 16 15 14 18 18 O 1.21273 * 120.00244 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99929 * 180.02562 * 17 16 15 20 20 C 1.52999 * 109.47169 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.47175 * 179.97438 * 20 19 17 22 22 N 1.46497 * 109.46838 * 180.02562 * 21 20 19 23 23 C 1.35764 * 119.62282 * 269.72129 * 22 21 20 24 24 C 1.35354 * 120.69920 * 179.76212 * 23 22 21 25 25 C 1.40186 * 119.94776 * 0.51680 * 24 23 22 26 26 C 1.36399 * 119.26988 * 359.74416 * 25 24 23 27 27 C 1.34662 * 119.62685 * 90.00292 * 22 21 20 28 28 O 1.22057 * 119.98465 * 359.97438 * 27 22 21 29 29 C 1.47017 * 125.65081 * 180.02562 * 9 7 2 30 30 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 31 31 H 1.08994 * 110.37088 * 274.74679 * 10 9 7 32 32 H 1.09000 * 110.36502 * 37.07908 * 10 9 7 33 33 H 1.08997 * 111.19432 * 279.19511 * 11 10 9 34 34 H 1.08997 * 110.93877 * 155.28744 * 11 10 9 35 35 H 1.09000 * 109.47088 * 300.06311 * 14 12 11 36 36 H 1.08997 * 109.47094 * 60.06638 * 14 12 11 37 37 H 1.09000 * 109.47077 * 299.99823 * 15 14 12 38 38 H 1.08997 * 109.47106 * 60.00151 * 15 14 12 39 39 H 0.97003 * 120.00212 * 359.97438 * 16 15 14 40 40 H 1.09000 * 109.46891 * 299.99771 * 19 17 16 41 41 H 1.08993 * 109.47255 * 59.99492 * 19 17 16 42 42 H 1.09000 * 109.47077 * 299.99718 * 20 19 17 43 43 H 1.08997 * 109.47106 * 60.00045 * 20 19 17 44 44 H 1.09000 * 109.47028 * 299.99919 * 21 20 19 45 45 H 1.08997 * 109.46927 * 60.00106 * 21 20 19 46 46 H 1.07995 * 119.64966 * 0.02562 * 23 22 21 47 47 H 1.08007 * 120.02109 * 180.23869 * 24 23 22 48 48 H 1.08006 * 120.36232 * 179.72138 * 25 24 23 49 49 H 1.07999 * 120.34800 * 180.02562 * 26 25 24 50 50 H 1.09004 * 109.87978 * 300.44199 * 29 9 7 51 51 H 1.09007 * 109.88391 * 61.59954 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 -0.1416 -2.5330 0.0177 11 6 -0.4047 -3.9335 -0.5957 12 6 0.7782 -4.7525 -0.0144 13 1 0.5504 -5.0960 0.9946 14 6 1.1203 -5.9354 -0.9225 15 6 2.2878 -6.7197 -0.3202 16 7 2.6158 -7.8520 -1.1899 17 6 3.6187 -8.6887 -0.8573 18 8 4.2492 -8.5046 0.1621 19 6 3.9565 -9.8532 -1.7523 20 6 5.1239 -10.6375 -1.1499 21 6 5.4664 -11.8202 -2.0583 22 7 6.5839 -12.5715 -1.4811 23 6 7.8578 -12.2421 -1.8154 24 6 8.9066 -12.9185 -1.2915 25 6 8.6818 -13.9784 -0.4019 26 6 7.4011 -14.3113 -0.0713 27 6 6.3356 -13.5846 -0.6295 28 8 5.1846 -13.8719 -0.3423 29 6 1.9316 -3.7275 0.0054 30 1 -0.4849 0.8401 0.0004 31 1 -0.5184 -2.4869 1.0394 32 1 -0.6047 -1.7586 -0.5938 33 1 -0.3602 -3.9017 -1.6843 34 1 -1.3604 -4.3336 -0.2573 35 1 0.2516 -6.5876 -1.0123 36 1 1.4014 -5.5668 -1.9089 37 1 3.1563 -6.0671 -0.2309 38 1 2.0073 -7.0883 0.6665 39 1 2.1108 -7.9999 -2.0048 40 1 3.0881 -10.5058 -1.8428 41 1 4.2377 -9.4839 -2.7384 42 1 5.9921 -9.9848 -1.0598 43 1 4.8430 -11.0069 -0.1637 44 1 4.5981 -12.4729 -2.1480 45 1 5.7472 -11.4512 -3.0447 46 1 8.0364 -11.4290 -2.5034 47 1 9.9158 -12.6447 -1.5620 48 1 9.5136 -14.5256 0.0166 49 1 7.2079 -15.1245 0.6126 50 1 2.5542 -3.8531 -0.8805 51 1 2.5321 -3.8623 0.9051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732052879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:05 Heat of formation + Delta-G solvation = -52.816061 kcal Electronic energy + Delta-G solvation = -28923.622296 eV Core-core repulsion = 24822.485240 eV Total energy + Delta-G solvation = -4101.137056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.29399 -40.79160 -39.42321 -37.95807 -36.71044 -36.28050 -34.76067 -33.79980 -32.45594 -30.82800 -30.70254 -28.91828 -27.76389 -26.48284 -24.93514 -24.31105 -23.48478 -22.60774 -21.92735 -21.49988 -20.63059 -18.90144 -18.71790 -18.25861 -17.79030 -17.27211 -17.15350 -16.88698 -16.79787 -16.53102 -16.47315 -15.64457 -15.57719 -15.46295 -15.07436 -14.67517 -14.65556 -14.28332 -13.88148 -13.79925 -13.52615 -13.34519 -13.30374 -13.15656 -12.99760 -12.88174 -12.81044 -12.71373 -12.66909 -12.56614 -12.21949 -12.01957 -11.82268 -11.78048 -11.57425 -11.44416 -11.25883 -11.09873 -10.98406 -10.84029 -10.74590 -10.08223 -8.94683 -8.88524 -7.77958 -5.22857 -0.05553 0.94177 1.44725 1.46933 1.55701 1.66201 1.67975 2.24933 2.48708 2.71252 3.30529 3.66691 3.68410 3.73953 3.76139 3.78862 3.93894 3.96315 4.01207 4.15869 4.17432 4.26686 4.32432 4.34414 4.37883 4.44725 4.54670 4.58742 4.62953 4.67653 4.72154 4.75015 4.87857 5.00419 5.03610 5.09481 5.11824 5.17438 5.19080 5.24683 5.25986 5.42384 5.42954 5.47727 5.51083 5.68179 5.69342 5.82959 6.12416 6.32065 6.60014 7.00892 7.10910 7.30412 7.78901 8.42794 9.23254 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021083 B = 0.001435 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.761769 B =19512.808004 C =20408.623195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.068 4.068 3 Si 0.981 3.019 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.077 0.923 9 N -0.629 5.629 10 C 0.147 3.853 11 C -0.121 4.121 12 C -0.086 4.086 13 H 0.074 0.926 14 C -0.098 4.098 15 C 0.122 3.878 16 N -0.716 5.716 17 C 0.502 3.498 18 O -0.597 6.597 19 C -0.125 4.125 20 C -0.112 4.112 21 C 0.090 3.910 22 N -0.495 5.495 23 C 0.134 3.866 24 C -0.237 4.237 25 C 0.004 3.996 26 C -0.289 4.289 27 C 0.490 3.510 28 O -0.613 6.613 29 C 0.135 3.865 30 H 0.247 0.753 31 H -0.019 1.019 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.420 0.580 40 H 0.118 0.882 41 H 0.140 0.860 42 H 0.071 0.929 43 H 0.033 0.967 44 H 0.089 0.911 45 H 0.142 0.858 46 H 0.205 0.795 47 H 0.180 0.820 48 H 0.163 0.837 49 H 0.139 0.861 50 H 0.028 0.972 51 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.909 -29.119 -11.912 34.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.809 3.191 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.372 4.372 8 H 0.094 0.906 9 N -0.355 5.355 10 C 0.022 3.978 11 C -0.159 4.159 12 C -0.106 4.106 13 H 0.093 0.907 14 C -0.136 4.136 15 C -0.002 4.002 16 N -0.368 5.368 17 C 0.290 3.710 18 O -0.478 6.478 19 C -0.165 4.165 20 C -0.150 4.150 21 C -0.030 4.030 22 N -0.203 5.203 23 C 0.007 3.993 24 C -0.259 4.259 25 C -0.018 4.018 26 C -0.311 4.311 27 C 0.295 3.705 28 O -0.501 6.501 29 C 0.010 3.990 30 H 0.057 0.943 31 H -0.001 1.001 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.257 0.743 40 H 0.136 0.864 41 H 0.158 0.842 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.107 0.893 45 H 0.160 0.840 46 H 0.222 0.778 47 H 0.197 0.803 48 H 0.180 0.820 49 H 0.157 0.843 50 H 0.046 0.954 51 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 14.565 -28.928 -11.036 34.217 hybrid contribution -0.042 1.129 0.652 1.304 sum 14.524 -27.800 -10.384 33.039 Atomic orbital electron populations 1.70058 1.06155 1.24989 1.58569 1.25645 0.96699 1.00976 1.02699 0.85043 0.77444 0.78971 0.77659 1.20833 1.21875 1.19864 1.19464 0.90943 0.84084 1.42677 0.90555 1.44871 1.02957 1.00979 1.86676 1.21840 0.83968 0.95694 0.96276 1.22909 0.97776 0.95038 1.00179 1.22027 0.94869 0.94015 0.99687 0.90742 1.21610 0.97804 0.95382 0.98789 1.21242 0.97801 0.87344 0.93847 1.45931 1.35470 1.28097 1.27333 1.21424 0.79063 0.84201 0.86301 1.90718 1.52955 1.75111 1.28996 1.21582 1.00574 0.94199 1.00153 1.21526 0.98991 0.96089 0.98441 1.22197 0.89698 0.92826 0.98309 1.45624 1.08848 1.28198 1.37650 1.22813 0.81727 0.98202 0.96545 1.21200 1.00709 1.00198 1.03827 1.21865 0.96582 0.92865 0.90462 1.22130 0.93146 1.06443 1.09379 1.17614 0.90690 0.81439 0.80717 1.90914 1.24445 1.70572 1.64194 1.21550 0.95242 0.85070 0.97143 0.94315 1.00060 0.90857 0.91134 0.89698 0.88421 0.90344 0.93485 0.92820 0.74280 0.86359 0.84197 0.90999 0.94783 0.89280 0.83979 0.77807 0.80300 0.81974 0.84324 0.95406 0.97467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.34 10.08 21.65 0.22 -57.12 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 3 Si 0.98 46.45 29.55 68.60 2.03 48.47 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.24 -14.07 10.27 84.03 0.86 -13.20 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 9 N -0.63 -33.43 3.39 -691.54 -2.35 -35.78 16 10 C 0.15 7.37 5.91 86.94 0.51 7.88 16 11 C -0.12 -4.25 6.55 32.07 0.21 -4.04 16 12 C -0.09 -2.77 2.97 -9.60 -0.03 -2.80 16 13 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.10 -2.16 4.73 30.59 0.14 -2.01 16 15 C 0.12 2.93 5.52 86.38 0.48 3.41 16 16 N -0.72 -12.64 5.56 -463.08 -2.57 -15.21 16 17 C 0.50 10.61 7.83 87.66 0.69 11.30 16 18 O -0.60 -19.54 15.98 -3.01 -0.05 -19.59 16 19 C -0.13 -1.31 5.70 29.85 0.17 -1.14 16 20 C -0.11 -1.67 4.83 30.60 0.15 -1.53 16 21 C 0.09 0.90 5.34 86.38 0.46 1.36 16 22 N -0.49 -6.86 2.58 -650.98 -1.68 -8.54 16 23 C 0.13 0.80 10.28 83.42 0.86 1.66 16 24 C -0.24 -1.24 10.01 22.08 0.22 -1.01 16 25 C 0.00 0.04 10.09 22.31 0.23 0.26 16 26 C -0.29 -5.03 9.99 22.40 0.22 -4.81 16 27 C 0.49 11.11 7.41 84.82 0.63 11.74 16 28 O -0.61 -19.63 16.64 -5.50 -0.09 -19.72 16 29 C 0.13 5.69 5.98 86.73 0.52 6.21 16 30 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 31 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 32 H 0.07 4.16 5.85 -2.39 -0.01 4.15 16 33 H 0.07 2.36 8.05 -2.39 -0.02 2.34 16 34 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.08 1.66 8.06 -2.39 -0.02 1.64 16 37 H 0.05 1.38 7.49 -2.39 -0.02 1.36 16 38 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.42 4.03 8.47 -92.71 -0.79 3.25 16 40 H 0.12 0.83 8.14 -2.39 -0.02 0.82 16 41 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.07 1.13 8.10 -2.39 -0.02 1.11 16 43 H 0.03 0.83 8.10 -2.39 -0.02 0.81 16 44 H 0.09 1.18 7.39 -2.39 -0.02 1.16 16 45 H 0.14 0.03 8.01 -2.39 -0.02 0.01 16 46 H 0.21 -0.59 8.03 -2.91 -0.02 -0.62 16 47 H 0.18 -0.26 8.06 -2.91 -0.02 -0.29 16 48 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 49 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 50 H 0.03 1.14 7.76 -2.39 -0.02 1.12 16 51 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 Total: -1.00 -92.09 414.77 2.42 -89.67 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 0.13 Total: 8.00 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 6.79 Total: 9.81 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -6.38 Total: -116.64 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -0.14 Total: -39.31 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -92.09 2.42 -89.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732052879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.851 kcal (2) G-P(sol) polarization free energy of solvation -92.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds