Wall clock time and date at job start Wed Apr 1 2020 05:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 119.99612 * 2 1 4 4 C 1.38218 * 119.99256 * 180.22604 * 3 2 1 5 5 C 1.38258 * 120.00255 * 359.81106 * 4 3 2 6 6 C 1.38218 * 119.99825 * 359.97438 * 5 4 3 7 7 C 1.38205 * 119.99919 * 179.78391 * 2 1 3 8 8 C 1.50705 * 120.00155 * 0.02562 * 7 2 1 9 9 C 1.52998 * 109.47261 * 84.72495 * 8 7 2 10 10 C 1.50693 * 109.47069 * 180.02562 * 9 8 7 11 11 O 1.21287 * 120.00334 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00070 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00192 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46494 * 324.99401 * 13 12 10 15 15 C 1.52991 * 109.47290 * 84.99687 * 13 12 10 16 16 C 1.53004 * 109.46955 * 204.99828 * 13 12 10 17 17 N 1.46895 * 109.47035 * 54.99785 * 16 13 12 18 18 C 1.46906 * 110.99789 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.47109 * 179.97438 * 18 17 16 20 20 O 1.21296 * 119.99996 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99978 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99848 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00405 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99358 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00464 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99431 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46988 * 60.00440 * 26 24 22 28 28 H 1.48496 * 109.47065 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47452 * 300.00298 * 26 24 22 30 30 H 1.08998 * 109.47646 * 270.21354 * 1 2 3 31 31 H 1.09009 * 109.47050 * 30.21546 * 1 2 3 32 32 H 1.09005 * 109.47153 * 150.20847 * 1 2 3 33 33 H 1.07990 * 120.00624 * 0.05637 * 3 2 1 34 34 H 1.08002 * 119.99350 * 179.82975 * 4 3 2 35 35 H 1.07997 * 119.99775 * 179.97438 * 5 4 3 36 36 H 1.07996 * 119.99642 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.46623 * 324.72527 * 8 7 2 38 38 H 1.09004 * 109.46779 * 204.72467 * 8 7 2 39 39 H 1.08997 * 109.46794 * 59.99834 * 9 8 7 40 40 H 1.09000 * 109.47063 * 300.00443 * 9 8 7 41 41 H 0.97001 * 120.00169 * 359.97438 * 12 10 9 42 42 H 1.09003 * 109.47519 * 59.99608 * 15 13 12 43 43 H 1.08997 * 109.47213 * 180.02562 * 15 13 12 44 44 H 1.09007 * 109.47274 * 299.99979 * 15 13 12 45 45 H 1.08996 * 109.46863 * 294.99627 * 16 13 12 46 46 H 1.09002 * 109.46661 * 174.99803 * 16 13 12 47 47 H 1.00902 * 111.00273 * 303.95364 * 17 16 13 48 48 H 1.08992 * 109.47459 * 299.99826 * 18 17 16 49 49 H 1.09004 * 109.47040 * 59.99976 * 18 17 16 50 50 H 0.97002 * 119.99767 * 359.97438 * 21 19 18 51 51 H 0.96997 * 119.99770 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0047 5 6 4.2717 0.0000 -0.0055 6 6 3.5806 -1.1970 -0.0010 7 6 2.1980 -1.1969 0.0045 8 6 1.4445 -2.5020 0.0089 9 6 1.0752 -2.8825 -1.4263 10 6 0.3212 -4.1873 -1.4219 11 8 0.1013 -4.7571 -0.3740 12 7 -0.1078 -4.7216 -2.5824 13 6 -0.8414 -5.9898 -2.5781 14 1 -0.4489 -6.6337 -1.7910 15 6 -2.3255 -5.7196 -2.3233 16 6 -0.6739 -6.6804 -3.9330 17 7 0.7564 -6.8320 -4.2319 18 6 0.9561 -7.4935 -5.5283 19 6 2.4320 -7.6305 -5.8002 20 8 3.2382 -7.2182 -4.9932 21 7 2.8561 -8.2113 -6.9401 22 6 4.1988 -8.3364 -7.1872 23 1 4.9167 -7.9693 -6.4687 24 6 4.6360 -8.9357 -8.3622 25 7 3.7625 -9.3828 -9.2363 26 14 6.4655 -9.1056 -8.6993 27 1 7.0929 -9.9189 -7.6268 28 1 6.6673 -9.7748 -10.0094 29 1 7.0905 -7.7589 -8.7292 30 1 -0.3634 0.0038 1.0276 31 1 -0.3633 0.8881 -0.5172 32 1 -0.3634 -0.8919 -0.5106 33 1 1.6583 2.1327 0.0009 34 1 4.1204 2.1327 -0.0075 35 1 5.3517 0.0000 -0.0096 36 1 4.1206 -2.1323 -0.0012 37 1 0.5361 -2.3950 0.6016 38 1 2.0712 -3.2819 0.4417 39 1 1.9837 -2.9894 -2.0190 40 1 0.4487 -2.1027 -1.8592 41 1 0.0683 -4.2661 -3.4205 42 1 -2.7180 -5.0756 -3.1103 43 1 -2.8712 -6.6632 -2.3197 44 1 -2.4449 -5.2276 -1.3580 45 1 -1.1453 -6.0773 -4.7089 46 1 -1.1444 -7.6631 -3.9005 47 1 1.2281 -5.9405 -4.2040 48 1 0.4970 -8.4817 -5.5065 49 1 0.4958 -6.8963 -6.3156 50 1 2.2113 -8.5413 -7.5853 51 1 4.0678 -9.8008 -10.0566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733012926.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:34 Heat of formation + Delta-G solvation = -67.619919 kcal Electronic energy + Delta-G solvation = -29367.397150 eV Core-core repulsion = 25265.618151 eV Total energy + Delta-G solvation = -4101.779000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.23870 -39.53523 -38.32723 -36.79940 -34.46451 -34.23740 -33.64338 -32.69423 -31.42989 -31.18992 -29.70517 -27.62121 -27.24892 -25.19414 -24.77152 -23.27137 -22.24014 -21.42717 -20.64875 -20.35805 -19.26947 -17.93332 -17.44230 -16.58327 -16.36025 -16.23638 -15.97673 -15.39351 -15.18506 -15.06753 -14.58193 -14.49555 -14.30827 -13.94161 -13.78330 -13.62597 -13.40129 -13.27157 -13.11844 -13.04803 -12.63122 -12.58304 -12.46578 -12.38276 -11.96434 -11.95585 -11.72927 -11.62585 -11.50523 -11.46031 -11.09800 -11.05505 -10.99226 -10.96987 -10.45591 -10.23115 -9.88461 -9.51873 -9.16409 -9.01197 -8.78294 -8.49318 -8.11077 -7.98125 -6.43495 -3.84399 1.11233 1.16913 2.61659 3.07884 3.18939 3.24774 3.29209 3.53809 3.88178 4.03429 4.26079 4.44849 4.55949 4.69238 4.76862 4.77342 4.82741 4.94189 4.98507 5.00355 5.12416 5.16700 5.20146 5.24893 5.28425 5.33497 5.34284 5.41352 5.45600 5.54565 5.59227 5.61426 5.67858 5.74470 5.78085 5.91663 5.92356 5.95291 6.02980 6.06922 6.23617 6.26953 6.30919 6.43691 6.46004 6.80336 7.12809 7.40845 7.53332 7.57960 8.04054 8.18275 8.59177 9.15907 9.52016 10.03469 10.74096 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009260 B = 0.002080 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.153425 B =13457.361943 C =15964.509708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.083 4.083 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.124 4.124 6 C -0.110 4.110 7 C -0.082 4.082 8 C -0.065 4.065 9 C -0.138 4.138 10 C 0.518 3.482 11 O -0.541 6.541 12 N -0.724 5.724 13 C 0.144 3.856 14 H 0.097 0.903 15 C -0.161 4.161 16 C 0.050 3.950 17 N -0.667 5.667 18 C 0.050 3.950 19 C 0.439 3.561 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.397 0.603 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.032 0.968 46 H 0.087 0.913 47 H 0.347 0.653 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.392 0.608 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 18.269 13.921 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.142 4.142 6 C -0.128 4.128 7 C -0.082 4.082 8 C -0.102 4.102 9 C -0.178 4.178 10 C 0.305 3.695 11 O -0.418 6.418 12 N -0.376 5.376 13 C 0.039 3.961 14 H 0.115 0.885 15 C -0.220 4.220 16 C -0.080 4.080 17 N -0.300 5.300 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.467 6.467 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.231 0.769 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.105 0.895 47 H 0.167 0.833 48 H 0.105 0.895 49 H 0.061 0.939 50 H 0.225 0.775 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.688 17.434 15.383 25.589 hybrid contribution 0.433 0.590 -1.868 2.006 sum -10.255 18.024 13.515 24.752 Atomic orbital electron populations 1.20881 0.91361 1.02855 1.02490 1.19787 0.95962 0.92631 0.99950 1.21009 0.94292 0.97354 1.01293 1.21126 0.94321 0.98046 1.00525 1.21155 0.99955 0.92521 1.00539 1.21144 0.93644 0.98413 0.99636 1.19779 0.93698 0.94465 1.00287 1.20323 1.00714 0.93759 0.95448 1.21691 1.01639 0.95038 0.99427 1.20603 0.78568 0.86721 0.83604 1.90697 1.57113 1.62723 1.31218 1.46053 1.57963 1.24426 1.09157 1.21027 0.91494 0.84891 0.98704 0.88458 1.22142 0.95390 1.02268 1.02152 1.22304 0.90139 1.00676 0.94845 1.60004 1.09293 1.28996 1.31708 1.21692 0.96595 1.00087 0.89877 1.19801 0.89315 0.84660 0.83765 1.90530 1.55552 1.53472 1.47136 1.41856 1.08272 1.52206 1.17615 1.19653 0.82765 1.36432 1.04102 0.87981 1.25266 1.00223 0.96820 0.95620 1.69602 1.34423 1.40007 1.10273 0.85914 0.82139 0.78660 0.77495 1.19855 1.20966 1.19912 0.91107 0.91620 0.91143 0.86271 0.86273 0.86095 0.85775 0.90100 0.90028 0.88325 0.88924 0.76881 0.92609 0.91439 0.91947 0.95037 0.89516 0.83264 0.89466 0.93882 0.77459 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 9.22 36.01 0.33 -0.49 16 2 C -0.08 -0.73 5.88 -104.62 -0.62 -1.35 16 3 C -0.12 -1.01 9.70 -39.58 -0.38 -1.40 16 4 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 5 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 6 C -0.11 -1.07 9.68 -39.58 -0.38 -1.45 16 7 C -0.08 -0.79 5.13 -104.63 -0.54 -1.33 16 8 C -0.06 -0.63 3.94 -27.88 -0.11 -0.74 16 9 C -0.14 -1.26 5.49 -27.89 -0.15 -1.41 16 10 C 0.52 6.11 7.79 -10.99 -0.09 6.03 16 11 O -0.54 -8.31 15.64 5.55 0.09 -8.22 16 12 N -0.72 -7.53 4.35 -53.81 -0.23 -7.77 16 13 C 0.14 1.59 2.88 -67.93 -0.20 1.39 16 14 H 0.10 1.35 7.58 -51.93 -0.39 0.95 16 15 C -0.16 -1.45 9.48 37.15 0.35 -1.10 16 16 C 0.05 0.57 5.30 -3.82 -0.02 0.55 16 17 N -0.67 -10.38 6.12 -115.06 -0.70 -11.08 16 18 C 0.05 0.86 6.17 -4.97 -0.03 0.82 16 19 C 0.44 10.27 7.82 -10.98 -0.09 10.18 16 20 O -0.58 -15.77 15.78 5.54 0.09 -15.68 16 21 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 22 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 26 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.38 8.09 -51.92 -0.42 -0.04 16 32 H 0.07 0.48 5.41 -51.93 -0.28 0.20 16 33 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.08 0.80 6.96 -51.93 -0.36 0.44 16 38 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 0.67 6.88 -51.93 -0.36 0.31 16 41 H 0.40 3.37 8.16 -40.82 -0.33 3.04 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 45 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.35 5.51 7.28 -39.29 -0.29 5.22 16 48 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 49 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 51 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 422.09 15.07 6.36 6.36 Total: -1.00 -33.75 422.09 -9.89 -43.64 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -8.18 Total: 15.82 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -2.95 Total: -1.19 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.27 Total: -56.71 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -33.75 -9.89 -43.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733012926.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.976 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds