Wall clock time and date at job start Wed Apr 1 2020 05:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 119.99612 * 2 1 4 4 C 1.38218 * 119.99256 * 180.22604 * 3 2 1 5 5 C 1.38258 * 120.00255 * 359.81106 * 4 3 2 6 6 C 1.38218 * 119.99825 * 359.97438 * 5 4 3 7 7 C 1.38205 * 119.99919 * 179.78391 * 2 1 3 8 8 C 1.50705 * 120.00155 * 0.02562 * 7 2 1 9 9 C 1.52998 * 109.47261 * 84.72495 * 8 7 2 10 10 C 1.50693 * 109.47069 * 180.02562 * 9 8 7 11 11 O 1.21287 * 120.00334 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00070 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00192 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46494 * 324.99401 * 13 12 10 15 15 C 1.52991 * 109.47290 * 84.99687 * 13 12 10 16 16 C 1.53004 * 109.46955 * 204.99828 * 13 12 10 17 17 N 1.46895 * 109.47035 * 54.99785 * 16 13 12 18 18 C 1.46906 * 110.99789 * 179.97438 * 17 16 13 19 19 C 1.50703 * 109.47109 * 179.97438 * 18 17 16 20 20 O 1.21296 * 119.99996 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99978 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99848 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00405 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99358 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00464 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99431 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46988 * 60.00440 * 26 24 22 28 28 H 1.48496 * 109.47065 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47452 * 300.00298 * 26 24 22 30 30 H 1.08998 * 109.47646 * 270.21354 * 1 2 3 31 31 H 1.09009 * 109.47050 * 30.21546 * 1 2 3 32 32 H 1.09005 * 109.47153 * 150.20847 * 1 2 3 33 33 H 1.07990 * 120.00624 * 0.05637 * 3 2 1 34 34 H 1.08002 * 119.99350 * 179.82975 * 4 3 2 35 35 H 1.07997 * 119.99775 * 179.97438 * 5 4 3 36 36 H 1.07996 * 119.99642 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.46623 * 324.72527 * 8 7 2 38 38 H 1.09004 * 109.46779 * 204.72467 * 8 7 2 39 39 H 1.08997 * 109.46794 * 59.99834 * 9 8 7 40 40 H 1.09000 * 109.47063 * 300.00443 * 9 8 7 41 41 H 0.97001 * 120.00169 * 359.97438 * 12 10 9 42 42 H 1.09003 * 109.47519 * 59.99608 * 15 13 12 43 43 H 1.08997 * 109.47213 * 180.02562 * 15 13 12 44 44 H 1.09007 * 109.47274 * 299.99979 * 15 13 12 45 45 H 1.08996 * 109.46863 * 294.99627 * 16 13 12 46 46 H 1.09002 * 109.46661 * 174.99803 * 16 13 12 47 47 H 1.00902 * 111.00273 * 303.95364 * 17 16 13 48 48 H 1.08992 * 109.47459 * 299.99826 * 18 17 16 49 49 H 1.09004 * 109.47040 * 59.99976 * 18 17 16 50 50 H 0.97002 * 119.99767 * 359.97438 * 21 19 18 51 51 H 0.96997 * 119.99770 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0047 5 6 4.2717 0.0000 -0.0055 6 6 3.5806 -1.1970 -0.0010 7 6 2.1980 -1.1969 0.0045 8 6 1.4445 -2.5020 0.0089 9 6 1.0752 -2.8825 -1.4263 10 6 0.3212 -4.1873 -1.4219 11 8 0.1013 -4.7571 -0.3740 12 7 -0.1078 -4.7216 -2.5824 13 6 -0.8414 -5.9898 -2.5781 14 1 -0.4489 -6.6337 -1.7910 15 6 -2.3255 -5.7196 -2.3233 16 6 -0.6739 -6.6804 -3.9330 17 7 0.7564 -6.8320 -4.2319 18 6 0.9561 -7.4935 -5.5283 19 6 2.4320 -7.6305 -5.8002 20 8 3.2382 -7.2182 -4.9932 21 7 2.8561 -8.2113 -6.9401 22 6 4.1988 -8.3364 -7.1872 23 1 4.9167 -7.9693 -6.4687 24 6 4.6360 -8.9357 -8.3622 25 7 3.7625 -9.3828 -9.2363 26 14 6.4655 -9.1056 -8.6993 27 1 7.0929 -9.9189 -7.6268 28 1 6.6673 -9.7748 -10.0094 29 1 7.0905 -7.7589 -8.7292 30 1 -0.3634 0.0038 1.0276 31 1 -0.3633 0.8881 -0.5172 32 1 -0.3634 -0.8919 -0.5106 33 1 1.6583 2.1327 0.0009 34 1 4.1204 2.1327 -0.0075 35 1 5.3517 0.0000 -0.0096 36 1 4.1206 -2.1323 -0.0012 37 1 0.5361 -2.3950 0.6016 38 1 2.0712 -3.2819 0.4417 39 1 1.9837 -2.9894 -2.0190 40 1 0.4487 -2.1027 -1.8592 41 1 0.0683 -4.2661 -3.4205 42 1 -2.7180 -5.0756 -3.1103 43 1 -2.8712 -6.6632 -2.3197 44 1 -2.4449 -5.2276 -1.3580 45 1 -1.1453 -6.0773 -4.7089 46 1 -1.1444 -7.6631 -3.9005 47 1 1.2281 -5.9405 -4.2040 48 1 0.4970 -8.4817 -5.5065 49 1 0.4958 -6.8963 -6.3156 50 1 2.2113 -8.5413 -7.5853 51 1 4.0678 -9.8008 -10.0566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733012926.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:33 Heat of formation + Delta-G solvation = -90.491046 kcal Electronic energy + Delta-G solvation = -29368.388917 eV Core-core repulsion = 25265.618151 eV Total energy + Delta-G solvation = -4102.770766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.10458 -40.33401 -40.07942 -37.91029 -36.03737 -35.20084 -35.03675 -33.34479 -33.25906 -32.26956 -30.44551 -28.97358 -27.85172 -26.71991 -25.70153 -24.59155 -22.93232 -22.25564 -21.47217 -21.21361 -21.02894 -19.91362 -18.44045 -17.81008 -17.22312 -17.16335 -16.91715 -16.83088 -16.36498 -16.12808 -15.89370 -15.77191 -15.38959 -15.16008 -15.12505 -14.51519 -14.32722 -14.16899 -14.09794 -13.98279 -13.70671 -13.52608 -13.32495 -13.22339 -13.08997 -13.03558 -12.99237 -12.79540 -12.69675 -12.56673 -12.43562 -12.20792 -12.13024 -11.93300 -11.74103 -11.69572 -11.50771 -10.85796 -10.37068 -10.06313 -10.01945 -9.68964 -9.44979 -9.32343 -8.47047 -5.95653 0.44006 0.49654 1.39220 1.41464 1.52068 1.68021 2.05150 2.23030 2.28924 2.85728 2.89966 3.20341 3.49968 3.67598 3.88132 3.90297 4.02540 4.07343 4.12904 4.20961 4.24080 4.29010 4.32229 4.39234 4.49779 4.50130 4.58950 4.60354 4.62941 4.68529 4.75890 4.81027 4.81861 4.84203 4.97935 5.00171 5.08007 5.10690 5.23595 5.28809 5.37548 5.40334 5.56715 5.61846 5.64778 5.77767 5.86763 6.08681 6.15733 6.38020 6.55534 6.59986 7.12356 7.28881 7.56134 8.11726 8.69940 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009260 B = 0.002080 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.153425 B =13457.361943 C =15964.509708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.091 4.091 3 C -0.127 4.127 4 C -0.127 4.127 5 C -0.135 4.135 6 C -0.129 4.129 7 C -0.094 4.094 8 C -0.058 4.058 9 C -0.129 4.129 10 C 0.514 3.486 11 O -0.582 6.582 12 N -0.716 5.716 13 C 0.145 3.855 14 H 0.064 0.936 15 C -0.151 4.151 16 C 0.056 3.944 17 N -0.688 5.688 18 C 0.065 3.935 19 C 0.435 3.565 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.271 1.271 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.141 0.859 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.409 0.591 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.060 0.940 46 H 0.097 0.903 47 H 0.343 0.657 48 H 0.105 0.895 49 H 0.073 0.927 50 H 0.397 0.603 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.425 19.537 12.761 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.091 4.091 3 C -0.145 4.145 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.147 4.147 7 C -0.094 4.094 8 C -0.096 4.096 9 C -0.169 4.169 10 C 0.302 3.698 11 O -0.462 6.462 12 N -0.368 5.368 13 C 0.040 3.960 14 H 0.082 0.918 15 C -0.210 4.210 16 C -0.073 4.073 17 N -0.321 5.321 18 C -0.067 4.067 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.209 5.209 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.199 1.199 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.136 0.864 41 H 0.245 0.755 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.115 0.885 47 H 0.163 0.837 48 H 0.123 0.877 49 H 0.091 0.909 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.980 18.702 14.185 26.354 hybrid contribution 0.801 0.214 -1.460 1.679 sum -11.179 18.917 12.726 25.392 Atomic orbital electron populations 1.20911 0.90049 1.03572 1.02945 1.20041 0.97051 0.92448 0.99517 1.21327 0.94523 0.98038 1.00604 1.21442 0.94687 0.98620 0.99723 1.21384 1.00777 0.92554 1.00598 1.21276 0.94039 0.98840 1.00589 1.19801 0.93719 0.94642 1.01254 1.20202 1.00175 0.93492 0.95693 1.21661 1.01675 0.94289 0.99228 1.21046 0.78193 0.87243 0.83278 1.90678 1.58836 1.63991 1.32719 1.46019 1.57333 1.24133 1.09355 1.20965 0.92767 0.84599 0.97653 0.91815 1.22048 0.93739 1.03210 1.01953 1.22358 0.87696 1.01866 0.95338 1.59975 1.12125 1.29033 1.30987 1.21548 0.91619 1.01911 0.91594 1.20953 0.91974 0.82507 0.82302 1.90500 1.57695 1.54729 1.48234 1.41922 1.07561 1.52947 1.18513 1.19606 0.83893 1.38296 1.04608 0.90479 1.26019 1.04355 0.95904 0.94937 1.69657 1.35970 1.39844 1.10482 0.85016 0.77124 0.78663 0.77711 1.19930 1.19417 1.19614 0.90769 0.90068 0.91219 0.84149 0.84203 0.84910 0.86166 0.90390 0.92090 0.88215 0.86443 0.75515 0.90713 0.90160 0.93418 0.92227 0.88486 0.83733 0.87686 0.90905 0.76890 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.22 71.24 0.66 -0.80 16 2 C -0.09 -1.51 5.88 -19.87 -0.12 -1.62 16 3 C -0.13 -1.91 9.70 22.27 0.22 -1.69 16 4 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 5 C -0.14 -2.37 10.05 22.27 0.22 -2.15 16 6 C -0.13 -2.59 9.68 22.27 0.22 -2.37 16 7 C -0.09 -1.82 5.13 -19.87 -0.10 -1.93 16 8 C -0.06 -1.17 3.94 29.85 0.12 -1.06 16 9 C -0.13 -2.34 5.49 29.85 0.16 -2.18 16 10 C 0.51 12.27 7.79 87.65 0.68 12.95 16 11 O -0.58 -18.64 15.64 -3.05 -0.05 -18.68 16 12 N -0.72 -14.34 4.35 -442.53 -1.93 -16.26 16 13 C 0.15 3.06 2.88 44.99 0.13 3.18 16 14 H 0.06 1.80 7.58 -2.39 -0.02 1.78 16 15 C -0.15 -2.44 9.48 71.98 0.68 -1.76 16 16 C 0.06 1.13 5.30 86.31 0.46 1.59 16 17 N -0.69 -20.45 6.12 -517.92 -3.17 -23.62 16 18 C 0.07 2.11 6.17 85.56 0.53 2.64 16 19 C 0.44 20.36 7.82 87.66 0.69 21.05 16 20 O -0.62 -34.55 15.78 -3.08 -0.05 -34.60 16 21 N -0.57 -28.97 5.29 -306.98 -1.62 -30.59 16 22 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16 23 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 25 N -0.92 -49.09 13.05 21.66 0.28 -48.81 16 26 Si 0.99 42.79 29.55 68.60 2.03 44.81 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.74 8.09 -2.38 -0.02 0.72 16 32 H 0.07 0.86 5.41 -2.38 -0.01 0.84 16 33 H 0.14 1.44 8.06 -2.92 -0.02 1.42 16 34 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 37 H 0.08 1.60 6.96 -2.39 -0.02 1.58 16 38 H 0.06 1.46 8.01 -2.38 -0.02 1.44 16 39 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.12 1.54 6.88 -2.39 -0.02 1.52 16 41 H 0.41 6.28 8.16 -92.71 -0.76 5.53 16 42 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.34 10.59 7.28 -89.69 -0.65 9.94 16 48 H 0.11 3.05 8.14 -2.39 -0.02 3.04 16 49 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 50 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 51 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -74.77 422.09 0.36 -74.41 By element: Atomic # 1 Polarization: 48.68 SS G_CDS: -1.18 Total: 47.50 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 6.04 Total: 5.84 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -6.43 Total: -119.28 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.10 Total: -53.28 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.77 0.36 -74.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733012926.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.078 kcal (2) G-P(sol) polarization free energy of solvation -74.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds