Wall clock time and date at job start Wed Apr 1 2020 05:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 110.34354 * 2 1 4 4 O 1.21285 * 119.99680 * 237.71477 * 3 2 1 5 5 N 1.34774 * 120.00020 * 57.71307 * 3 2 1 6 6 C 1.46502 * 119.99677 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47200 * 179.97438 * 6 5 3 8 8 C 1.29826 * 118.55277 * 94.97792 * 7 6 5 9 9 C 1.50142 * 123.28349 * 180.37517 * 8 7 6 10 10 N 1.46837 * 110.27593 * 342.95018 * 9 8 7 11 11 C 1.46892 * 111.00425 * 287.53709 * 10 9 8 12 12 C 1.50708 * 109.47472 * 293.95726 * 11 10 9 13 13 O 1.21289 * 119.99473 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00367 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00166 * 179.97438 * 14 12 11 16 16 H 1.08000 * 119.99502 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00030 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00096 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99852 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46869 * 90.00383 * 19 17 15 21 21 H 1.48500 * 109.46972 * 210.00253 * 19 17 15 22 22 H 1.48497 * 109.47023 * 330.00341 * 19 17 15 23 23 C 1.47139 * 110.17413 * 50.93437 * 10 9 8 24 24 C 1.50307 * 118.55626 * 275.00600 * 7 6 5 25 25 C 1.51098 * 110.48003 * 122.35165 * 2 1 3 26 26 C 1.30537 * 111.10409 * 135.29810 * 25 2 1 27 27 C 1.51100 * 111.09836 * 359.97438 * 26 25 2 28 28 C 1.54631 * 110.38572 * 237.71132 * 2 1 3 29 29 H 1.08998 * 109.47524 * 60.70397 * 1 2 3 30 30 H 1.09000 * 109.47143 * 180.70556 * 1 2 3 31 31 H 1.09006 * 109.47078 * 300.69979 * 1 2 3 32 32 H 0.96998 * 120.00441 * 359.97438 * 5 3 2 33 33 H 1.09009 * 109.47019 * 60.00481 * 6 5 3 34 34 H 1.08998 * 109.47696 * 300.00424 * 6 5 3 35 35 H 1.08005 * 118.35481 * 0.35508 * 8 7 6 36 36 H 1.09004 * 109.33618 * 103.20106 * 9 8 7 37 37 H 1.09005 * 109.33317 * 222.86373 * 9 8 7 38 38 H 1.09005 * 109.47035 * 53.95419 * 11 10 9 39 39 H 1.08994 * 109.47663 * 173.95546 * 11 10 9 40 40 H 0.97001 * 119.99858 * 359.97438 * 14 12 11 41 41 H 0.97001 * 120.00494 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.58235 * 171.47082 * 23 10 9 43 43 H 1.08995 * 109.63709 * 50.89361 * 23 10 9 44 44 H 1.09002 * 109.42896 * 283.57565 * 24 7 6 45 45 H 1.09005 * 109.43189 * 43.47654 * 24 7 6 46 46 H 1.07998 * 124.45307 * 315.27160 * 25 2 1 47 47 H 1.08000 * 124.45041 * 180.02562 * 26 25 2 48 48 H 1.09006 * 110.38659 * 224.75074 * 27 26 25 49 49 H 1.08997 * 110.38635 * 102.37844 * 27 26 25 50 50 H 1.09006 * 111.03972 * 334.47352 * 28 2 1 51 51 H 1.08993 * 111.03880 * 98.40472 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7908 1.7865 -0.8880 5 7 1.7036 2.2616 0.9867 6 6 2.2134 3.6350 0.9869 7 6 1.6759 4.3702 2.1876 8 6 2.4036 4.4200 3.2617 9 6 1.9694 5.1156 4.5195 10 7 0.8591 6.0336 4.2360 11 6 1.3276 7.2151 3.4995 12 6 2.2459 8.0239 4.3791 13 8 2.4859 7.6528 5.5087 14 7 2.8004 9.1595 3.9108 15 6 3.6353 9.8956 4.7112 16 1 3.8490 9.5651 5.7169 17 6 4.2073 11.0661 4.2281 18 7 3.9477 11.4678 3.0042 19 14 5.3444 12.0693 5.3190 20 1 6.7429 11.6043 5.1365 21 1 5.2473 13.5040 4.9483 22 1 4.9468 11.8970 6.7394 23 6 -0.2005 5.3341 3.4924 24 6 0.3207 5.0128 2.0893 25 6 2.0587 -0.7574 1.1958 26 6 3.0340 -1.5547 0.8535 27 6 3.3178 -1.4621 -0.6277 28 6 2.0687 -0.7743 -1.2253 29 1 -0.3634 0.5028 -0.8962 30 1 -0.3633 -1.0276 0.0127 31 1 -0.3633 0.5247 0.8837 32 1 1.1140 1.9630 1.6967 33 1 1.8920 4.1421 0.0771 34 1 3.3025 3.6184 1.0282 35 1 3.3694 3.9367 3.2498 36 1 1.6466 4.3732 5.2494 37 1 2.8075 5.6813 4.9266 38 1 1.8666 6.8967 2.6071 39 1 0.4723 7.8251 3.2091 40 1 2.6087 9.4560 3.0073 41 1 4.3473 12.2847 2.6668 42 1 -1.0792 5.9748 3.4188 43 1 -0.4600 4.4092 4.0074 44 1 0.3973 5.9338 1.5112 45 1 -0.3694 4.3299 1.5937 46 1 1.6798 -0.6527 2.2017 47 1 3.5674 -2.1967 1.5388 48 1 3.4437 -2.4578 -1.0532 49 1 4.2063 -0.8566 -0.8070 50 1 1.3444 -1.5117 -1.5716 51 1 2.3443 -0.0918 -2.0292 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734630515.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:00 Heat of formation + Delta-G solvation = -56.335413 kcal Electronic energy + Delta-G solvation = -30494.470378 eV Core-core repulsion = 26393.180711 eV Total energy + Delta-G solvation = -4101.289667 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.71409 -41.07815 -39.48744 -38.60999 -36.48813 -35.86739 -33.82688 -33.25936 -32.28897 -31.82554 -30.00895 -29.65835 -27.51274 -26.36583 -25.77186 -24.58103 -23.35764 -22.71030 -21.20102 -20.91639 -20.05585 -19.85765 -18.51046 -18.04171 -17.88870 -17.24805 -16.75702 -16.64225 -16.49679 -16.11504 -16.00499 -15.80233 -15.51527 -15.24320 -15.05367 -14.86557 -14.42663 -14.14242 -14.02295 -13.93285 -13.63364 -13.50016 -13.28760 -13.11449 -12.99418 -12.93995 -12.86379 -12.77298 -12.55547 -12.40981 -12.18169 -12.13354 -12.12307 -12.10213 -11.71691 -11.65292 -11.45525 -11.13819 -10.28815 -10.18490 -10.05173 -9.96857 -9.77323 -9.15862 -8.45890 -5.94326 0.91367 1.17703 1.37544 1.40992 1.53837 1.64767 2.07033 2.28711 2.36805 2.84416 3.21167 3.39099 3.47109 3.61928 3.65496 3.73540 3.82392 4.05558 4.10564 4.20504 4.28066 4.34205 4.38598 4.43877 4.45877 4.52167 4.53593 4.58865 4.66694 4.73223 4.77259 4.79309 4.80277 4.91738 4.96289 4.99942 5.02790 5.09275 5.10400 5.20993 5.31655 5.35821 5.41434 5.45396 5.50122 5.79688 5.90001 5.93772 6.12264 6.23291 6.50119 6.61467 7.13895 7.18601 7.57910 8.13492 8.71576 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.001989 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.975687 B =14075.105032 C =14592.119474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 C 0.524 3.476 4 O -0.585 6.585 5 N -0.706 5.706 6 C 0.163 3.837 7 C -0.138 4.138 8 C -0.156 4.156 9 C 0.079 3.921 10 N -0.523 5.523 11 C 0.057 3.943 12 C 0.442 3.558 13 O -0.614 6.614 14 N -0.576 5.576 15 C -0.330 4.330 16 H 0.079 0.921 17 C -0.015 4.015 18 N -0.922 5.922 19 Si 0.992 3.008 20 H -0.272 1.272 21 H -0.271 1.271 22 H -0.272 1.272 23 C 0.054 3.946 24 C -0.115 4.115 25 C -0.168 4.168 26 C -0.152 4.152 27 C -0.109 4.109 28 C -0.111 4.111 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.414 0.586 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.395 0.605 41 H 0.277 0.723 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.149 0.851 47 H 0.144 0.856 48 H 0.089 0.911 49 H 0.058 0.942 50 H 0.098 0.902 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 -26.069 -7.822 29.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.060 4.060 3 C 0.311 3.689 4 O -0.465 6.465 5 N -0.358 5.358 6 C 0.040 3.960 7 C -0.139 4.139 8 C -0.177 4.177 9 C -0.049 4.049 10 N -0.245 5.245 11 C -0.074 4.074 12 C 0.229 3.771 13 O -0.500 6.500 14 N -0.213 5.213 15 C -0.460 4.460 16 H 0.097 0.903 17 C -0.215 4.215 18 N -0.563 5.563 19 Si 0.816 3.184 20 H -0.198 1.198 21 H -0.196 1.196 22 H -0.197 1.197 23 C -0.073 4.073 24 C -0.153 4.153 25 C -0.186 4.186 26 C -0.170 4.170 27 C -0.146 4.146 28 C -0.149 4.149 29 H 0.077 0.923 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.251 0.749 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.125 0.875 40 H 0.228 0.772 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.120 0.880 46 H 0.167 0.833 47 H 0.162 0.838 48 H 0.108 0.892 49 H 0.077 0.923 50 H 0.116 0.884 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.871 -25.678 -7.346 28.474 hybrid contribution 1.165 0.746 -0.504 1.472 sum -8.706 -24.932 -7.850 27.551 Atomic orbital electron populations 1.21819 0.89992 1.04206 1.02978 1.20681 0.98663 0.90002 0.96615 1.20983 0.79558 0.87786 0.80550 1.90673 1.38558 1.78782 1.38462 1.45914 1.50921 1.11296 1.27628 1.20152 0.97516 0.81740 0.96611 1.20885 0.97815 1.00979 0.94196 1.22977 0.99608 0.99123 0.96007 1.21127 0.94322 0.94568 0.94852 1.62252 1.11012 1.06032 1.45251 1.21723 0.98494 0.92953 0.94242 1.20820 0.84578 0.82932 0.88759 1.90457 1.65971 1.71621 1.21962 1.41953 1.42287 1.21358 1.15744 1.19647 1.23666 1.04673 0.97976 0.90253 1.26038 0.99602 0.98020 0.97813 1.69674 1.45259 1.24853 1.16497 0.84940 0.78060 0.77364 0.78061 1.19775 1.19590 1.19667 1.22438 0.93933 0.99639 0.91289 1.21075 0.93593 1.01158 0.99458 1.23215 0.99188 0.97974 0.98179 1.23625 0.97167 0.99026 0.97162 1.21441 0.98071 1.01387 0.93673 1.22505 0.97548 0.98770 0.96043 0.92340 0.89635 0.90652 0.74918 0.91478 0.93016 0.87557 0.88352 0.91358 0.91866 0.87464 0.77185 0.91387 0.88911 0.88696 0.90664 0.88008 0.83339 0.83785 0.89207 0.92345 0.88384 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 8.39 71.98 0.60 -0.63 16 2 C -0.06 -0.83 0.74 -52.99 -0.04 -0.87 16 3 C 0.52 11.25 6.54 87.66 0.57 11.82 16 4 O -0.58 -17.98 15.46 -3.04 -0.05 -18.03 16 5 N -0.71 -12.46 5.41 -466.78 -2.53 -14.98 16 6 C 0.16 3.55 5.72 85.63 0.49 4.04 16 7 C -0.14 -2.89 4.61 -15.40 -0.07 -2.96 16 8 C -0.16 -3.88 8.95 26.68 0.24 -3.64 16 9 C 0.08 2.39 5.57 85.39 0.48 2.86 16 10 N -0.52 -15.85 4.77 -905.79 -4.32 -20.17 16 11 C 0.06 1.96 4.55 85.56 0.39 2.35 16 12 C 0.44 21.03 7.38 87.66 0.65 21.68 16 13 O -0.61 -33.56 14.00 -3.06 -0.04 -33.60 16 14 N -0.58 -29.87 5.29 -306.99 -1.62 -31.50 16 15 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 16 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 17 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 18 N -0.92 -50.43 13.05 21.66 0.28 -50.14 16 19 Si 0.99 43.47 29.55 68.60 2.03 45.49 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 C 0.05 1.08 6.02 86.29 0.52 1.60 16 24 C -0.11 -2.02 5.26 29.75 0.16 -1.87 16 25 C -0.17 -2.06 9.37 26.25 0.25 -1.82 16 26 C -0.15 -1.97 10.78 26.25 0.28 -1.69 16 27 C -0.11 -1.63 6.81 30.53 0.21 -1.42 16 28 C -0.11 -1.73 6.03 31.70 0.19 -1.53 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.49 7.49 -2.38 -0.02 0.47 16 32 H 0.41 5.06 7.80 -92.71 -0.72 4.34 16 33 H 0.07 1.56 8.13 -2.38 -0.02 1.54 16 34 H 0.05 1.34 7.85 -2.39 -0.02 1.32 16 35 H 0.11 2.65 7.81 -2.91 -0.02 2.62 16 36 H 0.10 2.61 8.14 -2.38 -0.02 2.60 16 37 H 0.07 2.70 5.76 -2.38 -0.01 2.69 16 38 H 0.06 2.05 6.00 -2.38 -0.01 2.04 16 39 H 0.11 3.26 8.09 -2.39 -0.02 3.24 16 40 H 0.39 19.59 7.90 -92.71 -0.73 18.86 16 41 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.09 1.58 8.08 -2.39 -0.02 1.56 16 44 H 0.08 1.45 7.14 -2.39 -0.02 1.43 16 45 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 47 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 48 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 49 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.10 1.08 7.91 -2.38 -0.02 1.06 16 51 H 0.07 1.37 6.94 -2.39 -0.02 1.35 16 Total: -1.00 -73.50 406.22 -0.56 -74.06 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -0.51 Total: 39.36 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.19 Total: 9.51 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -8.19 Total: -116.79 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -0.09 Total: -51.63 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -73.50 -0.56 -74.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734630515.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.724 kcal (2) G-P(sol) polarization free energy of solvation -73.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds