Wall clock time and date at job start Wed Apr 1 2020 04:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99968 * 2 1 4 4 H 1.48495 * 109.47567 * 270.00294 * 3 2 1 5 5 H 1.48506 * 109.47136 * 30.00583 * 3 2 1 6 6 H 1.48501 * 109.47207 * 150.00138 * 3 2 1 7 7 C 1.38803 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00192 * 163.07668 * 7 2 1 9 9 N 1.36940 * 120.00036 * 343.07099 * 7 2 1 10 10 C 1.46932 * 120.62887 * 331.84585 * 9 7 2 11 11 C 1.53186 * 108.77953 * 233.58736 * 10 9 7 12 12 C 1.53047 * 109.31441 * 305.36891 * 11 10 9 13 13 C 1.52997 * 109.46202 * 181.38012 * 12 11 10 14 14 C 1.52993 * 109.47136 * 174.96860 * 13 12 11 15 15 N 1.46504 * 109.47194 * 180.02562 * 14 13 12 16 16 C 1.34778 * 119.99851 * 180.02562 * 15 14 13 17 17 O 1.21275 * 120.00379 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99605 * 179.97438 * 16 15 14 19 19 O 1.42904 * 109.47026 * 179.97438 * 18 16 15 20 20 C 1.42900 * 114.00299 * 179.97438 * 19 18 16 21 21 C 1.50696 * 109.47569 * 180.02562 * 20 19 18 22 22 C 1.38647 * 120.78811 * 269.72278 * 21 20 19 23 23 C 1.38207 * 119.15989 * 179.79184 * 22 21 20 24 24 N 1.31877 * 120.76477 * 0.49411 * 23 22 21 25 25 C 1.31871 * 121.72265 * 359.73234 * 24 23 22 26 26 C 1.38197 * 120.76702 * 0.02936 * 25 24 23 27 27 C 1.53040 * 109.52369 * 61.36980 * 12 11 10 28 28 C 1.46922 * 120.63394 * 151.82993 * 9 7 2 29 29 H 0.97004 * 119.99663 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.58332 * 113.80297 * 10 9 7 31 31 H 1.08995 * 109.70326 * 353.45049 * 10 9 7 32 32 H 1.08997 * 109.50332 * 185.41530 * 11 10 9 33 33 H 1.09007 * 109.52343 * 65.33588 * 11 10 9 34 34 H 1.08991 * 109.45557 * 301.35911 * 12 11 10 35 35 H 1.09008 * 109.46653 * 54.97564 * 13 12 11 36 36 H 1.08995 * 109.47519 * 294.97667 * 13 12 11 37 37 H 1.09008 * 109.46774 * 60.00779 * 14 13 12 38 38 H 1.08995 * 109.47576 * 300.00773 * 14 13 12 39 39 H 0.97000 * 119.99908 * 0.02562 * 15 14 13 40 40 H 1.08996 * 109.47640 * 60.00245 * 18 16 15 41 41 H 1.09005 * 109.47544 * 299.99526 * 18 16 15 42 42 H 1.09003 * 109.47335 * 300.00584 * 20 19 18 43 43 H 1.09007 * 109.46873 * 59.99889 * 20 19 18 44 44 H 1.08004 * 120.42249 * 0.02562 * 22 21 20 45 45 H 1.08003 * 119.61969 * 180.20126 * 23 22 21 46 46 H 1.07998 * 119.61473 * 179.97438 * 25 24 23 47 47 H 1.07992 * 120.42312 * 179.97438 * 26 25 24 48 48 H 1.09003 * 109.50350 * 58.58050 * 27 12 11 49 49 H 1.09004 * 109.49441 * 178.67668 * 27 12 11 50 50 H 1.08994 * 109.58512 * 246.19917 * 28 9 7 51 51 H 1.08998 * 109.58735 * 6.48183 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3701 -2.3625 0.3443 10 6 0.2261 -2.3408 1.2661 11 6 0.4973 -3.3208 2.4118 12 6 0.8119 -4.7021 1.8327 13 6 1.0496 -5.6917 2.9751 14 6 1.2399 -7.0970 2.4011 15 7 1.4670 -8.0447 3.4950 16 6 1.6620 -9.3508 3.2255 17 8 1.6500 -9.7415 2.0775 18 6 1.8961 -10.3255 4.3508 19 8 2.0737 -11.6382 3.8147 20 6 2.3043 -12.6436 4.8035 21 6 2.4773 -13.9805 4.1300 22 6 1.3865 -14.8041 3.8967 23 6 1.5831 -16.0214 3.2725 24 7 2.7912 -16.4059 2.9093 25 6 3.8516 -15.6507 3.1193 26 6 3.7317 -14.4187 3.7339 27 6 2.0674 -4.6177 0.9617 28 6 1.8138 -3.6527 -0.2007 29 1 -0.4850 0.8401 0.0004 30 1 -0.6770 -2.6410 0.7347 31 1 0.0967 -1.3358 1.6677 32 1 -0.3832 -3.3862 3.0509 33 1 1.3469 -2.9699 2.9978 34 1 -0.0281 -5.0416 1.2269 35 1 0.1899 -5.6863 3.6452 36 1 1.9429 -5.4008 3.5278 37 1 2.0997 -7.1024 1.7310 38 1 0.3467 -7.3878 1.8484 39 1 1.4770 -7.7322 4.4132 40 1 1.0364 -10.3204 5.0207 41 1 2.7893 -10.0345 4.9036 42 1 3.2063 -12.4008 5.3653 43 1 1.4534 -12.6863 5.4835 44 1 0.3953 -14.4966 4.1955 45 1 0.7383 -16.6673 3.0842 46 1 4.8253 -15.9995 2.8083 47 1 4.6039 -13.8050 3.9035 48 1 2.9023 -4.2542 1.5610 49 1 2.3045 -5.6063 0.5685 50 1 1.0402 -4.0598 -0.8517 51 1 2.7331 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753599047.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:36 Heat of formation + Delta-G solvation = -35.198703 kcal Electronic energy + Delta-G solvation = -28823.170871 eV Core-core repulsion = 24722.797761 eV Total energy + Delta-G solvation = -4100.373110 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.64331 -39.97826 -38.25796 -37.78010 -35.42800 -33.70791 -33.57699 -31.65669 -31.37210 -30.11330 -29.40956 -28.10068 -26.65930 -24.90293 -23.92303 -23.08536 -22.50501 -21.99793 -21.02207 -20.48783 -19.07527 -17.86091 -17.31820 -17.21269 -16.80605 -16.73556 -16.33217 -16.04367 -15.70605 -15.27133 -14.81694 -14.49947 -14.28595 -14.18969 -14.03671 -13.82964 -13.49123 -13.38501 -13.32965 -12.88810 -12.79795 -12.48352 -12.29562 -12.20176 -12.00253 -11.59125 -11.33762 -11.22061 -10.89311 -10.68008 -10.47235 -10.30595 -10.29399 -10.20117 -10.15400 -9.98356 -9.93146 -9.83454 -9.58732 -9.46376 -9.38707 -9.17751 -8.44630 -6.62910 -5.76762 -3.18726 0.65625 0.70043 2.38410 2.51072 3.30858 3.37869 3.44775 3.47166 3.66716 4.03804 4.18598 4.20198 4.43230 4.51385 4.55451 4.62250 4.64142 4.70118 4.79447 4.84591 4.91165 5.03142 5.15958 5.27635 5.33024 5.39432 5.46398 5.48100 5.60217 5.74060 5.78670 5.81601 6.00128 6.02400 6.11088 6.21363 6.23139 6.28400 6.38810 6.45544 6.57050 6.65253 6.72367 6.84717 6.88203 7.04282 7.26092 7.40210 7.52602 7.68533 7.81457 8.00279 8.47968 9.24326 9.88175 10.45370 11.31728 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.033306 B = 0.001333 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.477997 B =20993.995031 C =21238.169808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.171 3.829 11 C -0.134 4.134 12 C -0.075 4.075 13 C -0.124 4.124 14 C 0.118 3.882 15 N -0.728 5.728 16 C 0.509 3.491 17 O -0.517 6.517 18 C 0.044 3.956 19 O -0.355 6.355 20 C 0.099 3.901 21 C -0.046 4.046 22 C -0.151 4.151 23 C 0.096 3.904 24 N -0.482 5.482 25 C 0.097 3.903 26 C -0.150 4.150 27 C -0.130 4.130 28 C 0.144 3.856 29 H 0.253 0.747 30 H 0.016 0.984 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.400 0.600 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.137 0.863 45 H 0.158 0.842 46 H 0.158 0.842 47 H 0.137 0.863 48 H 0.057 0.943 49 H 0.051 0.949 50 H 0.016 0.984 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.361 -27.386 16.038 31.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.094 4.094 13 C -0.162 4.162 14 C -0.005 4.005 15 N -0.382 5.382 16 C 0.294 3.706 17 O -0.392 6.392 18 C -0.036 4.036 19 O -0.273 6.273 20 C 0.023 3.977 21 C -0.054 4.054 22 C -0.171 4.171 23 C -0.060 4.060 24 N -0.191 5.191 25 C -0.060 4.060 26 C -0.170 4.170 27 C -0.169 4.169 28 C 0.018 3.982 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.233 0.767 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.155 0.845 45 H 0.175 0.825 46 H 0.176 0.824 47 H 0.155 0.845 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.034 0.966 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.344 -28.366 14.559 32.059 hybrid contribution 0.265 1.995 1.176 2.331 sum 3.609 -26.372 15.735 30.920 Atomic orbital electron populations 1.70041 1.05255 1.25396 1.54143 1.25033 0.95265 0.98356 1.01053 0.86324 0.79149 0.83750 0.77720 1.21414 1.21587 1.20541 1.19184 0.92524 0.84895 1.41473 0.91814 1.44050 1.35906 1.01527 1.50064 1.20753 0.88620 0.98102 0.88043 1.22220 0.99870 0.95367 0.99850 1.20977 0.98539 0.94825 0.95097 1.21907 1.01982 0.93003 0.99346 1.21571 1.02192 0.87695 0.89001 1.45974 1.73870 1.07223 1.11084 1.20165 0.77438 0.82816 0.90208 1.90766 1.48615 1.77946 1.21854 1.22247 1.02332 0.83919 0.95133 1.88106 1.92979 1.14595 1.31624 1.21376 1.01141 0.85043 0.90153 1.19942 0.93672 0.94589 0.97191 1.22105 0.99557 0.95565 0.99837 1.22807 0.94910 0.94301 0.94013 1.67686 0.99443 1.34939 1.17079 1.22804 0.97756 0.90714 0.94744 1.22106 0.97952 0.97823 0.99153 1.22122 0.97055 0.98916 0.98806 1.20900 0.97513 0.86973 0.92850 0.93708 0.96572 0.89610 0.93473 0.92766 0.91657 0.91736 0.91530 0.90846 0.91399 0.76661 0.90043 0.90005 0.91567 0.91575 0.84527 0.82453 0.82444 0.84511 0.92432 0.93079 0.96580 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 11.19 55.49 0.62 -25.67 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 8 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.88 2.99 -172.33 -0.52 -15.40 16 10 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 11 C -0.13 -2.42 5.36 -26.61 -0.14 -2.56 16 12 C -0.08 -1.17 2.15 -90.58 -0.19 -1.37 16 13 C -0.12 -1.43 4.80 -26.74 -0.13 -1.56 16 14 C 0.12 1.37 5.43 -4.04 -0.02 1.35 16 15 N -0.73 -6.72 5.56 -60.29 -0.33 -7.06 16 16 C 0.51 5.73 7.91 -10.99 -0.09 5.64 16 17 O -0.52 -8.60 16.50 -14.35 -0.24 -8.84 16 18 C 0.04 0.31 6.42 36.00 0.23 0.54 16 19 O -0.35 -3.49 9.86 -55.14 -0.54 -4.03 16 20 C 0.10 0.61 6.11 36.00 0.22 0.83 16 21 C -0.05 -0.35 5.55 -104.32 -0.58 -0.92 16 22 C -0.15 -1.08 9.82 -39.44 -0.39 -1.46 16 23 C 0.10 0.74 11.18 -17.54 -0.20 0.54 16 24 N -0.48 -4.50 10.36 -13.25 -0.14 -4.63 16 25 C 0.10 0.74 11.18 -17.55 -0.20 0.55 16 26 C -0.15 -1.08 9.82 -39.44 -0.39 -1.47 16 27 C -0.13 -2.20 5.14 -26.61 -0.14 -2.34 16 28 C 0.14 3.05 6.52 -3.71 -0.02 3.02 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.96 6.54 -51.92 -0.34 0.63 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.40 2.32 8.47 -40.82 -0.35 1.97 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 43 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 44 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 45 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 46 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 48 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.05 0.77 6.50 -51.93 -0.34 0.43 16 50 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 LS Contribution 414.25 15.07 6.24 6.24 Total: -1.00 -36.02 414.25 -10.70 -46.72 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -8.48 Total: -1.64 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.28 Total: -2.33 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.37 Total: -52.76 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.78 Total: -12.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.02 -10.70 -46.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753599047.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.517 kcal (2) G-P(sol) polarization free energy of solvation -36.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds