Wall clock time and date at job start Wed Apr 1 2020 04:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99968 * 2 1 4 4 H 1.48495 * 109.47567 * 270.00294 * 3 2 1 5 5 H 1.48506 * 109.47136 * 30.00583 * 3 2 1 6 6 H 1.48501 * 109.47207 * 150.00138 * 3 2 1 7 7 C 1.38803 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00192 * 163.07668 * 7 2 1 9 9 N 1.36940 * 120.00036 * 343.07099 * 7 2 1 10 10 C 1.46932 * 120.62887 * 331.84585 * 9 7 2 11 11 C 1.53186 * 108.77953 * 233.58736 * 10 9 7 12 12 C 1.53047 * 109.31441 * 305.36891 * 11 10 9 13 13 C 1.52997 * 109.46202 * 181.38012 * 12 11 10 14 14 C 1.52993 * 109.47136 * 174.96860 * 13 12 11 15 15 N 1.46504 * 109.47194 * 180.02562 * 14 13 12 16 16 C 1.34778 * 119.99851 * 180.02562 * 15 14 13 17 17 O 1.21275 * 120.00379 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99605 * 179.97438 * 16 15 14 19 19 O 1.42904 * 109.47026 * 179.97438 * 18 16 15 20 20 C 1.42900 * 114.00299 * 179.97438 * 19 18 16 21 21 C 1.50696 * 109.47569 * 180.02562 * 20 19 18 22 22 C 1.38647 * 120.78811 * 269.72278 * 21 20 19 23 23 C 1.38207 * 119.15989 * 179.79184 * 22 21 20 24 24 N 1.31877 * 120.76477 * 0.49411 * 23 22 21 25 25 C 1.31871 * 121.72265 * 359.73234 * 24 23 22 26 26 C 1.38197 * 120.76702 * 0.02936 * 25 24 23 27 27 C 1.53040 * 109.52369 * 61.36980 * 12 11 10 28 28 C 1.46922 * 120.63394 * 151.82993 * 9 7 2 29 29 H 0.97004 * 119.99663 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.58332 * 113.80297 * 10 9 7 31 31 H 1.08995 * 109.70326 * 353.45049 * 10 9 7 32 32 H 1.08997 * 109.50332 * 185.41530 * 11 10 9 33 33 H 1.09007 * 109.52343 * 65.33588 * 11 10 9 34 34 H 1.08991 * 109.45557 * 301.35911 * 12 11 10 35 35 H 1.09008 * 109.46653 * 54.97564 * 13 12 11 36 36 H 1.08995 * 109.47519 * 294.97667 * 13 12 11 37 37 H 1.09008 * 109.46774 * 60.00779 * 14 13 12 38 38 H 1.08995 * 109.47576 * 300.00773 * 14 13 12 39 39 H 0.97000 * 119.99908 * 0.02562 * 15 14 13 40 40 H 1.08996 * 109.47640 * 60.00245 * 18 16 15 41 41 H 1.09005 * 109.47544 * 299.99526 * 18 16 15 42 42 H 1.09003 * 109.47335 * 300.00584 * 20 19 18 43 43 H 1.09007 * 109.46873 * 59.99889 * 20 19 18 44 44 H 1.08004 * 120.42249 * 0.02562 * 22 21 20 45 45 H 1.08003 * 119.61969 * 180.20126 * 23 22 21 46 46 H 1.07998 * 119.61473 * 179.97438 * 25 24 23 47 47 H 1.07992 * 120.42312 * 179.97438 * 26 25 24 48 48 H 1.09003 * 109.50350 * 58.58050 * 27 12 11 49 49 H 1.09004 * 109.49441 * 178.67668 * 27 12 11 50 50 H 1.08994 * 109.58512 * 246.19917 * 28 9 7 51 51 H 1.08998 * 109.58735 * 6.48183 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2728 9 7 1.3701 -2.3625 0.3443 10 6 0.2261 -2.3408 1.2661 11 6 0.4973 -3.3208 2.4118 12 6 0.8119 -4.7021 1.8327 13 6 1.0496 -5.6917 2.9751 14 6 1.2399 -7.0970 2.4011 15 7 1.4670 -8.0447 3.4950 16 6 1.6620 -9.3508 3.2255 17 8 1.6500 -9.7415 2.0775 18 6 1.8961 -10.3255 4.3508 19 8 2.0737 -11.6382 3.8147 20 6 2.3043 -12.6436 4.8035 21 6 2.4773 -13.9805 4.1300 22 6 1.3865 -14.8041 3.8967 23 6 1.5831 -16.0214 3.2725 24 7 2.7912 -16.4059 2.9093 25 6 3.8516 -15.6507 3.1193 26 6 3.7317 -14.4187 3.7339 27 6 2.0674 -4.6177 0.9617 28 6 1.8138 -3.6527 -0.2007 29 1 -0.4850 0.8401 0.0004 30 1 -0.6770 -2.6410 0.7347 31 1 0.0967 -1.3358 1.6677 32 1 -0.3832 -3.3862 3.0509 33 1 1.3469 -2.9699 2.9978 34 1 -0.0281 -5.0416 1.2269 35 1 0.1899 -5.6863 3.6452 36 1 1.9429 -5.4008 3.5278 37 1 2.0997 -7.1024 1.7310 38 1 0.3467 -7.3878 1.8484 39 1 1.4770 -7.7322 4.4132 40 1 1.0364 -10.3204 5.0207 41 1 2.7893 -10.0345 4.9036 42 1 3.2063 -12.4008 5.3653 43 1 1.4534 -12.6863 5.4835 44 1 0.3953 -14.4966 4.1955 45 1 0.7383 -16.6673 3.0842 46 1 4.8253 -15.9995 2.8083 47 1 4.6039 -13.8050 3.9035 48 1 2.9023 -4.2542 1.5610 49 1 2.3045 -5.6063 0.5685 50 1 1.0402 -4.0598 -0.8517 51 1 2.7331 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753599047.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:35 Heat of formation + Delta-G solvation = -58.863359 kcal Electronic energy + Delta-G solvation = -28824.197048 eV Core-core repulsion = 24722.797761 eV Total energy + Delta-G solvation = -4101.399287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.16748 -40.79154 -39.54294 -38.57996 -36.67257 -35.07918 -34.21618 -33.08152 -32.15502 -31.63846 -30.61078 -29.06737 -27.39484 -26.43708 -24.51395 -24.43111 -23.57386 -22.99107 -22.16063 -21.60645 -20.60087 -18.70290 -18.49337 -17.89134 -17.71582 -17.41447 -16.97641 -16.84855 -16.53746 -16.50752 -16.09268 -15.69026 -15.29133 -15.18452 -15.15138 -14.85432 -14.75502 -14.55424 -14.35468 -14.05794 -13.98516 -13.79711 -13.22494 -13.00845 -12.93529 -12.83419 -12.74725 -12.53774 -12.46057 -12.27035 -12.12966 -11.92571 -11.80527 -11.51571 -11.13653 -10.98171 -10.90648 -10.75889 -10.67536 -10.52364 -10.47453 -10.10015 -10.08427 -8.65888 -7.86872 -5.32456 0.13259 0.18897 1.46335 1.47160 1.57439 1.59019 1.86518 2.51593 2.74348 3.16029 3.27417 3.57732 3.67970 3.73869 3.78680 3.84812 3.87898 3.94610 4.12044 4.14925 4.19817 4.24915 4.28256 4.34183 4.43526 4.44722 4.46766 4.59600 4.67356 4.70085 4.75986 4.79259 4.87747 4.90936 4.98267 5.04337 5.06265 5.12586 5.28116 5.33085 5.36975 5.41515 5.43825 5.48364 5.57169 5.67892 5.74878 5.82205 5.99577 6.40100 6.58877 6.99547 7.16214 7.26585 7.88260 8.39829 9.19127 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.033306 B = 0.001333 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.477997 B =20993.995031 C =21238.169808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.265 4.265 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.173 3.827 11 C -0.120 4.120 12 C -0.072 4.072 13 C -0.106 4.106 14 C 0.123 3.877 15 N -0.711 5.711 16 C 0.503 3.497 17 O -0.582 6.582 18 C 0.048 3.952 19 O -0.395 6.395 20 C 0.099 3.901 21 C -0.062 4.062 22 C -0.157 4.157 23 C 0.081 3.919 24 N -0.514 5.514 25 C 0.081 3.919 26 C -0.158 4.158 27 C -0.117 4.117 28 C 0.137 3.863 29 H 0.250 0.750 30 H -0.010 1.010 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.420 0.580 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.155 0.845 45 H 0.176 0.824 46 H 0.175 0.825 47 H 0.155 0.845 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.007 0.993 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 -28.087 18.947 34.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.195 1.195 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.159 4.159 12 C -0.091 4.091 13 C -0.144 4.144 14 C -0.001 4.001 15 N -0.366 5.366 16 C 0.290 3.710 17 O -0.461 6.461 18 C -0.031 4.031 19 O -0.314 6.314 20 C 0.023 3.977 21 C -0.070 4.070 22 C -0.177 4.177 23 C -0.075 4.075 24 N -0.224 5.224 25 C -0.075 4.075 26 C -0.177 4.177 27 C -0.156 4.156 28 C 0.011 3.989 29 H 0.059 0.941 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.258 0.742 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.173 0.827 45 H 0.193 0.807 46 H 0.193 0.807 47 H 0.172 0.828 48 H 0.077 0.923 49 H 0.090 0.910 50 H 0.025 0.975 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.219 -29.077 17.526 34.211 hybrid contribution -0.021 2.191 0.206 2.201 sum 4.198 -26.886 17.732 32.479 Atomic orbital electron populations 1.70201 1.06702 1.25812 1.55498 1.25801 0.96040 1.01496 1.01280 0.85286 0.78128 0.79536 0.77553 1.21286 1.21663 1.19460 1.19522 0.92791 0.86212 1.41004 0.91867 1.44337 1.36063 1.02193 1.50896 1.20621 0.87445 0.97836 0.89307 1.22011 1.00954 0.95143 0.97753 1.20896 0.97447 0.94496 0.96265 1.21688 1.03686 0.91284 0.97726 1.21325 1.00865 0.88319 0.89552 1.45773 1.72702 1.06486 1.11603 1.21030 0.75902 0.83614 0.90480 1.90741 1.51649 1.79050 1.24688 1.22380 1.05334 0.81986 0.93398 1.88047 1.93444 1.16011 1.33899 1.21550 1.03202 0.83341 0.89563 1.20325 0.93827 0.95579 0.97258 1.22378 1.00522 0.95317 0.99478 1.23194 0.95088 0.95107 0.94107 1.67686 1.00379 1.36053 1.18235 1.23183 0.98253 0.91123 0.94938 1.22374 0.98770 0.97795 0.98785 1.21969 0.97821 0.98512 0.97286 1.21078 0.96784 0.86446 0.94565 0.94130 0.99168 0.93037 0.91025 0.92716 0.92476 0.89456 0.90041 0.92480 0.92883 0.74204 0.86567 0.86633 0.89375 0.89306 0.82700 0.80715 0.80749 0.82764 0.92338 0.90954 0.97548 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.05 11.19 21.65 0.24 -55.81 16 2 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 3 Si 0.97 45.12 29.59 68.60 2.03 47.15 16 4 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.26 -14.88 9.58 84.03 0.81 -14.07 16 8 H 0.06 3.47 7.88 -2.91 -0.02 3.45 16 9 N -0.61 -31.27 2.99 -699.12 -2.09 -33.36 16 10 C 0.17 8.36 5.30 86.36 0.46 8.82 16 11 C -0.12 -4.16 5.36 30.67 0.16 -3.99 16 12 C -0.07 -2.10 2.15 -10.77 -0.02 -2.12 16 13 C -0.11 -2.06 4.80 30.59 0.15 -1.92 16 14 C 0.12 2.58 5.43 86.38 0.47 3.04 16 15 N -0.71 -10.86 5.56 -463.06 -2.57 -13.43 16 16 C 0.50 10.19 7.91 87.66 0.69 10.88 16 17 O -0.58 -19.19 16.50 16.02 0.26 -18.92 16 18 C 0.05 0.51 6.42 71.23 0.46 0.96 16 19 O -0.39 -6.81 9.86 -129.94 -1.28 -8.09 16 20 C 0.10 0.92 6.11 71.23 0.44 1.35 16 21 C -0.06 -0.84 5.55 -19.67 -0.11 -0.95 16 22 C -0.16 -2.08 9.82 22.36 0.22 -1.86 16 23 C 0.08 1.23 11.18 84.68 0.95 2.17 16 24 N -0.51 -9.62 10.36 -195.84 -2.03 -11.65 16 25 C 0.08 1.23 11.18 84.68 0.95 2.18 16 26 C -0.16 -2.11 9.82 22.36 0.22 -1.89 16 27 C -0.12 -3.81 5.14 30.67 0.16 -3.65 16 28 C 0.14 5.84 6.52 86.36 0.56 6.40 16 29 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.05 2.81 6.06 -2.39 -0.01 2.80 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.40 6.54 -2.38 -0.02 1.39 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.42 2.93 8.47 -92.71 -0.79 2.15 16 40 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.12 0.44 8.14 -2.38 -0.02 0.42 16 42 H 0.09 0.40 8.10 -2.39 -0.02 0.38 16 43 H 0.09 0.39 8.10 -2.38 -0.02 0.37 16 44 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 45 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 46 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 48 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.07 2.07 6.50 -2.38 -0.02 2.05 16 50 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 51 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 Total: -1.00 -82.91 414.25 1.66 -81.25 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.13 Total: 9.96 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 6.97 Total: 2.90 kcal Atomic # 7 Polarization: -107.80 SS G_CDS: -6.45 Total: -114.25 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -1.02 Total: -27.01 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -82.91 1.66 -81.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753599047.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.392 kcal (2) G-P(sol) polarization free energy of solvation -82.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds