Wall clock time and date at job start Wed Apr 1 2020 04:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34779 * 120.00485 * 2 1 4 4 O 1.21288 * 119.99748 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00262 * 180.02562 * 3 2 1 6 6 N 1.46889 * 109.47135 * 180.02562 * 5 3 2 7 7 C 1.46897 * 111.00330 * 293.95217 * 6 5 3 8 8 C 1.46904 * 111.00184 * 169.99633 * 6 5 3 9 9 C 1.50701 * 109.47470 * 189.99678 * 8 6 5 10 10 O 1.21291 * 119.99463 * 0.02562 * 9 8 6 11 11 N 1.34768 * 119.99884 * 180.02562 * 9 8 6 12 12 C 1.46502 * 119.99629 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47004 * 269.99649 * 12 11 9 14 14 H 1.08001 * 120.00366 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00221 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99726 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00272 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46956 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47208 * 119.99993 * 17 15 13 20 20 H 1.48501 * 109.47470 * 240.00245 * 17 15 13 21 21 C 1.39926 * 120.00394 * 359.97438 * 11 9 8 22 22 C 1.38896 * 120.07192 * 270.00291 * 21 11 9 23 23 C 1.38089 * 119.92836 * 179.97438 * 22 21 11 24 24 C 1.38301 * 120.07154 * 0.26163 * 23 22 21 25 25 C 1.38265 * 120.14089 * 359.48342 * 24 23 22 26 26 C 1.50696 * 119.96735 * 180.25880 * 25 24 23 27 27 C 1.38136 * 120.06884 * 0.50983 * 25 24 23 28 28 C 1.50705 * 120.03559 * 179.76571 * 27 25 24 29 29 H 1.09007 * 109.46863 * 59.99517 * 1 2 3 30 30 H 1.08998 * 109.47705 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47022 * 300.00592 * 1 2 3 32 32 H 0.97005 * 119.99540 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47065 * 59.99491 * 5 3 2 34 34 H 1.09006 * 109.46478 * 299.99885 * 5 3 2 35 35 H 1.09005 * 109.46802 * 296.04828 * 7 6 5 36 36 H 1.09004 * 109.47282 * 56.03899 * 7 6 5 37 37 H 1.08996 * 109.48181 * 176.04776 * 7 6 5 38 38 H 1.09003 * 109.46876 * 69.99751 * 8 6 5 39 39 H 1.08997 * 109.47143 * 310.00192 * 8 6 5 40 40 H 1.08995 * 109.47722 * 29.99678 * 12 11 9 41 41 H 1.08999 * 109.47185 * 149.99795 * 12 11 9 42 42 H 0.97001 * 119.99558 * 180.02562 * 16 15 13 43 43 H 1.07999 * 120.03506 * 359.95652 * 22 21 11 44 44 H 1.08002 * 119.96096 * 179.97438 * 23 22 21 45 45 H 1.07991 * 119.93139 * 179.74706 * 24 23 22 46 46 H 1.08998 * 109.47556 * 270.25514 * 26 25 24 47 47 H 1.09005 * 109.47311 * 30.25507 * 26 25 24 48 48 H 1.09000 * 109.47542 * 150.25006 * 26 25 24 49 49 H 1.09001 * 109.47268 * 269.98345 * 28 27 25 50 50 H 1.09003 * 109.46927 * 29.98305 * 28 27 25 51 51 H 1.09002 * 109.46956 * 149.98548 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5326 2.2176 -0.0005 5 6 3.6460 1.1671 -0.0006 6 7 4.1356 2.5520 0.0002 7 6 3.7858 3.2348 -1.2525 8 6 5.5846 2.5979 0.2379 9 6 6.0097 4.0240 0.4759 10 8 5.1865 4.9144 0.4505 11 7 7.3045 4.3099 0.7170 12 6 7.7176 5.6962 0.9489 13 6 8.0818 6.3383 -0.3648 14 1 8.0130 5.7704 -1.2809 15 6 8.5041 7.6504 -0.3973 16 7 8.5894 8.3415 0.7184 17 14 8.9563 8.4461 -2.0257 18 1 8.7761 7.4630 -3.1239 19 1 8.0783 9.6199 -2.2638 20 1 10.3733 8.8883 -1.9840 21 6 8.2540 3.2826 0.7467 22 6 8.5378 2.6315 1.9404 23 6 9.4750 1.6177 1.9663 24 6 10.1349 1.2542 0.8065 25 6 9.8509 1.8968 -0.3844 26 6 10.5680 1.4935 -1.6470 27 6 8.9143 2.9116 -0.4170 28 6 8.6092 3.6151 -1.7144 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9499 -0.8401 0.0004 33 1 4.0089 0.6534 -0.8907 34 1 4.0095 0.6530 0.8892 35 1 4.2922 2.7474 -2.0857 36 1 2.7075 3.1858 -1.4042 37 1 4.0980 4.2776 -1.1975 38 1 6.1083 2.2032 -0.6328 39 1 5.8286 1.9952 1.1126 40 1 6.8972 6.2479 1.4078 41 1 8.5819 5.7115 1.6128 42 1 8.8861 9.2647 0.6955 43 1 8.0261 2.9180 2.8473 44 1 9.6964 1.1114 2.8942 45 1 10.8704 0.4638 0.8301 46 1 11.4786 2.0834 -1.7519 47 1 10.8245 0.4353 -1.5970 48 1 9.9198 1.6701 -2.5053 49 1 9.2731 4.4721 -1.8279 50 1 8.7600 2.9261 -2.5455 51 1 7.5738 3.9559 -1.7082 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051739708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:25 Heat of formation + Delta-G solvation = -20.093063 kcal Electronic energy + Delta-G solvation = -31857.966668 eV Core-core repulsion = 27758.248587 eV Total energy + Delta-G solvation = -4099.718081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.26842 -39.76437 -38.44411 -36.32055 -34.86977 -34.62629 -33.21428 -32.61337 -30.40608 -29.62451 -28.44074 -27.50410 -26.57151 -26.25329 -25.78383 -23.34536 -22.38670 -21.58741 -20.58750 -20.50421 -18.61872 -17.51346 -16.68793 -16.63584 -16.17334 -15.91781 -15.63947 -15.63246 -15.18679 -14.98299 -14.49849 -14.23533 -14.01672 -13.88478 -13.67506 -13.58101 -13.10393 -12.88652 -12.73416 -12.54304 -12.49703 -12.47168 -12.36929 -12.22790 -11.81015 -11.74605 -11.51965 -11.35326 -11.34442 -11.30237 -10.95342 -10.82589 -10.68635 -10.57516 -10.07052 -9.88670 -9.49196 -9.30326 -9.07166 -8.43502 -8.32255 -8.27499 -7.99931 -7.79489 -6.02226 -4.05540 1.55140 1.62790 2.58771 2.90519 3.29986 3.34939 3.38738 3.41322 3.69461 3.93443 4.25019 4.45781 4.63244 4.93464 4.99165 5.01733 5.09316 5.12406 5.13915 5.27940 5.29161 5.33172 5.37503 5.45934 5.46766 5.55260 5.56270 5.67239 5.77612 5.80453 5.87261 5.89282 6.06977 6.15481 6.19859 6.20265 6.30807 6.58040 6.63351 6.72674 6.74764 6.91910 6.98958 7.07044 7.11183 7.25622 7.34730 7.43858 7.57535 7.95187 8.17251 8.24392 8.44573 8.92440 9.09881 9.58552 11.06685 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009024 B = 0.003697 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.139801 B = 7571.214340 C = 9411.187008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.743 5.743 3 C 0.511 3.489 4 O -0.510 6.510 5 C 0.036 3.964 6 N -0.505 5.505 7 C 0.015 3.985 8 C 0.039 3.961 9 C 0.516 3.484 10 O -0.507 6.507 11 N -0.564 5.564 12 C 0.251 3.749 13 C -0.529 4.529 14 H 0.071 0.929 15 C 0.062 3.938 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.285 1.285 21 C 0.154 3.846 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.088 4.088 26 C -0.114 4.114 27 C -0.069 4.069 28 C -0.115 4.115 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.400 0.600 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.013 0.987 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.031 0.969 42 H 0.262 0.738 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.088 0.912 50 H 0.055 0.945 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.407 -23.433 -2.161 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.397 5.397 3 C 0.296 3.704 4 O -0.383 6.383 5 C -0.095 4.095 6 N -0.229 5.229 7 C -0.133 4.133 8 C -0.092 4.092 9 C 0.302 3.698 10 O -0.381 6.381 11 N -0.294 5.294 12 C 0.134 3.866 13 C -0.568 4.568 14 H 0.089 0.911 15 C -0.140 4.140 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.211 1.211 21 C 0.063 3.937 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.088 4.088 26 C -0.171 4.171 27 C -0.070 4.070 28 C -0.171 4.171 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.233 0.767 33 H 0.080 0.920 34 H 0.121 0.879 35 H 0.031 0.969 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.107 0.893 50 H 0.074 0.926 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.531 -21.655 -1.719 22.191 hybrid contribution 1.110 -0.341 -1.288 1.734 sum -3.421 -21.996 -3.007 22.463 Atomic orbital electron populations 1.21489 0.79690 1.01899 1.02381 1.45808 1.07682 1.08679 1.77546 1.20628 0.90066 0.83611 0.76062 1.90732 1.69940 1.30900 1.46719 1.21968 0.92334 0.92230 1.02974 1.61312 1.11958 1.12087 1.37539 1.22731 1.02305 1.01389 0.86847 1.22052 0.88231 0.96754 1.02177 1.20057 0.82044 0.89967 0.77719 1.90682 1.50293 1.48209 1.48921 1.45854 1.04862 1.08525 1.70192 1.19373 0.96148 0.73831 0.97281 1.21712 1.44250 0.96969 0.93854 0.91071 1.24921 0.95699 0.97017 0.96394 1.69947 1.47358 1.09813 1.26181 0.86523 0.77899 0.79588 0.83906 1.19731 1.20909 1.21081 1.17532 0.93257 0.90498 0.92402 1.21394 0.99006 0.96548 0.97482 1.20885 0.97080 0.97873 0.98006 1.20916 1.00316 1.00616 0.92324 1.19617 0.97264 0.96406 0.95553 1.20822 1.00160 1.00920 0.95152 1.20070 0.95606 0.95416 0.95953 1.21025 1.03577 0.99891 0.92603 0.92362 0.90876 0.92246 0.76725 0.92046 0.87925 0.96889 0.90029 0.88626 0.92297 0.88566 0.93470 0.95075 0.92852 0.85981 0.86227 0.86488 0.91213 0.92040 0.91234 0.89327 0.92614 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.70 59.85 0.64 1.30 16 2 N -0.74 -6.10 5.71 -67.07 -0.38 -6.49 16 3 C 0.51 6.40 7.52 -10.98 -0.08 6.32 16 4 O -0.51 -8.89 14.33 5.55 0.08 -8.81 16 5 C 0.04 0.41 5.45 -4.98 -0.03 0.39 16 6 N -0.50 -8.17 4.24 -245.83 -1.04 -9.21 16 7 C 0.01 0.25 8.85 60.06 0.53 0.78 16 8 C 0.04 0.62 4.26 -4.97 -0.02 0.60 16 9 C 0.52 10.89 6.70 -10.99 -0.07 10.82 16 10 O -0.51 -12.92 13.89 5.55 0.08 -12.85 16 11 N -0.56 -12.02 1.66 -114.74 -0.19 -12.21 16 12 C 0.25 6.57 5.15 -5.19 -0.03 6.54 16 13 C -0.53 -14.52 8.75 -34.44 -0.30 -14.82 16 14 H 0.07 1.88 4.33 -52.49 -0.23 1.65 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 C 0.15 2.76 3.90 -83.69 -0.33 2.44 16 22 C -0.12 -1.92 9.97 -39.39 -0.39 -2.31 16 23 C -0.12 -1.52 10.04 -39.61 -0.40 -1.91 16 24 C -0.12 -1.51 9.70 -39.55 -0.38 -1.90 16 25 C -0.09 -1.20 5.88 -104.65 -0.62 -1.81 16 26 C -0.11 -1.23 9.60 36.00 0.35 -0.88 16 27 C -0.07 -1.14 5.90 -104.43 -0.62 -1.75 16 28 C -0.11 -1.95 7.71 36.01 0.28 -1.67 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.40 1.87 8.83 -40.82 -0.36 1.51 16 33 H 0.06 0.56 8.12 -51.93 -0.42 0.13 16 34 H 0.10 0.91 7.93 -51.93 -0.41 0.50 16 35 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.08 1.42 5.82 -51.93 -0.30 1.12 16 37 H 0.10 1.97 5.88 -51.93 -0.31 1.66 16 38 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.10 1.34 7.89 -51.93 -0.41 0.93 16 40 H 0.05 1.39 7.42 -51.93 -0.39 1.01 16 41 H 0.03 0.85 8.05 -51.93 -0.42 0.43 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 48 H 0.07 0.72 5.94 -51.93 -0.31 0.42 16 49 H 0.09 1.70 7.04 -51.93 -0.37 1.33 16 50 H 0.06 0.76 5.95 -51.93 -0.31 0.45 16 51 H 0.07 1.33 6.04 -51.93 -0.31 1.02 16 LS Contribution 408.10 15.07 6.15 6.15 Total: -1.00 -36.01 408.10 -9.05 -45.07 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.89 Total: 3.78 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.57 Total: 3.76 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.88 Total: -53.77 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.16 Total: -21.66 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.01 -9.05 -45.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051739708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.973 kcal (2) G-P(sol) polarization free energy of solvation -36.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds