Wall clock time and date at job start Wed Apr 1 2020 05:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38285 * 119.96148 * 2 1 4 4 C 1.38289 * 120.13866 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.96181 * 179.97438 * 4 3 2 6 6 C 1.38103 * 120.07008 * 0.02562 * 4 3 2 7 7 C 1.38873 * 119.93266 * 359.97438 * 6 4 3 8 8 N 1.39928 * 120.07333 * 179.97438 * 7 6 4 9 9 C 1.46506 * 119.99743 * 19.34048 * 8 7 6 10 10 C 1.50703 * 109.46971 * 96.83528 * 9 8 7 11 11 H 1.07994 * 119.99987 * 115.85303 * 10 9 8 12 12 C 1.37874 * 119.99784 * 295.85212 * 10 9 8 13 13 N 1.31522 * 119.99461 * 142.64694 * 12 10 9 14 14 Si 1.86792 * 120.00555 * 322.64579 * 12 10 9 15 15 H 1.48501 * 109.47099 * 96.03379 * 14 12 10 16 16 H 1.48501 * 109.47515 * 216.03671 * 14 12 10 17 17 H 1.48506 * 109.47324 * 336.03642 * 14 12 10 18 18 C 1.34772 * 120.00364 * 199.33592 * 8 7 6 19 19 O 1.21292 * 119.99739 * 4.42372 * 18 8 7 20 20 C 1.50699 * 120.00367 * 184.41920 * 18 8 7 21 21 H 1.09005 * 109.46696 * 27.53009 * 20 18 8 22 22 C 1.53000 * 109.47065 * 267.53102 * 20 18 8 23 23 N 1.46893 * 109.47412 * 147.53000 * 20 18 8 24 24 C 1.46908 * 111.00008 * 293.71936 * 23 20 18 25 25 C 1.46896 * 111.00196 * 169.76348 * 23 20 18 26 26 C 1.50704 * 109.47241 * 190.00189 * 25 23 20 27 27 N 1.34771 * 120.00343 * 179.97438 * 26 25 23 28 28 O 1.21284 * 119.99906 * 359.97438 * 26 25 23 29 29 C 1.38109 * 119.96525 * 180.23328 * 2 1 3 30 30 H 1.08998 * 109.47052 * 90.00083 * 1 2 3 31 31 H 1.08997 * 109.47167 * 210.00115 * 1 2 3 32 32 H 1.08998 * 109.47482 * 329.99991 * 1 2 3 33 33 H 1.08000 * 119.92917 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.47179 * 270.02174 * 5 4 3 35 35 H 1.09000 * 109.47646 * 30.02060 * 5 4 3 36 36 H 1.08999 * 109.47046 * 150.02416 * 5 4 3 37 37 H 1.08000 * 120.03549 * 179.97438 * 6 4 3 38 38 H 1.08994 * 109.46811 * 336.83479 * 9 8 7 39 39 H 1.08991 * 109.46748 * 216.83390 * 9 8 7 40 40 H 0.97007 * 119.99737 * 179.97438 * 13 12 10 41 41 H 1.08996 * 109.47375 * 301.75675 * 22 20 18 42 42 H 1.09002 * 109.47101 * 61.75871 * 22 20 18 43 43 H 1.08997 * 109.47016 * 181.75104 * 22 20 18 44 44 H 1.08998 * 109.46777 * 67.99309 * 24 23 20 45 45 H 1.09001 * 109.46679 * 187.98964 * 24 23 20 46 46 H 1.09000 * 109.46976 * 307.99053 * 24 23 20 47 47 H 1.08994 * 109.47140 * 310.00074 * 25 23 20 48 48 H 1.08993 * 109.47022 * 70.00101 * 25 23 20 49 49 H 0.97006 * 119.99825 * 359.97438 * 27 26 25 50 50 H 0.96998 * 120.00618 * 180.02562 * 27 26 25 51 51 H 1.07993 * 120.03809 * 0.03935 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5805 1.2023 0.0005 5 6 4.3290 2.5102 -0.0001 6 6 4.2761 0.0093 0.0005 7 6 3.5856 -1.1955 0.0005 8 7 4.2874 -2.4060 0.0000 9 6 5.6907 -2.4393 0.4197 10 6 5.7726 -2.8520 1.8667 11 1 6.2591 -3.7774 2.1376 12 6 5.2265 -2.0482 2.8448 13 7 4.6282 -2.5902 3.8831 14 14 5.3364 -0.1895 2.6954 15 1 4.0834 0.3337 2.0943 16 1 5.5250 0.4052 4.0430 17 1 6.4884 0.1703 1.8300 18 6 3.6726 -3.5414 -0.3865 19 8 2.5367 -3.5020 -0.8097 20 6 4.3965 -4.8598 -0.2928 21 1 5.1376 -4.8115 0.5052 22 6 5.0961 -5.1530 -1.6215 23 7 3.4318 -5.9285 -0.0011 24 6 2.8481 -5.7601 1.3364 25 6 4.0539 -7.2519 -0.1412 26 6 2.9892 -8.3166 -0.0781 27 7 3.3288 -9.6164 -0.1857 28 8 1.8268 -8.0038 0.0696 29 6 2.1968 -1.1965 -0.0049 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6558 2.1323 -0.0004 34 1 4.5096 2.8251 -1.0279 35 1 3.7371 3.2679 0.5133 36 1 5.2819 2.3837 0.5139 37 1 5.3561 0.0133 0.0005 38 1 6.1295 -1.4489 0.2989 39 1 6.2365 -3.1558 -0.1940 40 1 4.2443 -2.0247 4.5714 41 1 4.3590 -5.1704 -2.4242 42 1 5.8342 -4.3765 -1.8226 43 1 5.5938 -6.1210 -1.5642 44 1 2.2166 -4.8717 1.3480 45 1 2.2479 -6.6358 1.5837 46 1 3.6465 -5.6479 2.0699 47 1 4.5704 -7.3110 -1.0991 48 1 4.7689 -7.4046 0.6671 49 1 4.2585 -9.8666 -0.3042 50 1 2.6435 -10.3017 -0.1454 51 1 1.6569 -2.1317 -0.0093 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052831514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:34 Heat of formation + Delta-G solvation = -9.890595 kcal Electronic energy + Delta-G solvation = -32827.987293 eV Core-core repulsion = 28728.711625 eV Total energy + Delta-G solvation = -4099.275668 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.33639 -39.49019 -38.33233 -36.27676 -35.28388 -33.61366 -33.04903 -32.65834 -31.40200 -29.92398 -28.22827 -27.99340 -26.81384 -26.08312 -24.47679 -23.43663 -22.68788 -21.13188 -20.12787 -19.90085 -18.40122 -17.48066 -17.03333 -16.79494 -16.27141 -16.25980 -15.50001 -15.20036 -15.06010 -14.54528 -14.52841 -14.30782 -13.91387 -13.60153 -13.57064 -13.25712 -12.97523 -12.83635 -12.81236 -12.73450 -12.51270 -12.17386 -12.04122 -11.97919 -11.72409 -11.62150 -11.50765 -11.22509 -11.04855 -10.95346 -10.91345 -10.85555 -10.53626 -10.36891 -10.10177 -9.81561 -9.72328 -9.60038 -9.10339 -8.69825 -8.40170 -7.83296 -7.69328 -6.93709 -6.52941 -4.35889 1.94073 2.02808 2.76788 3.19439 3.28032 3.32120 3.43443 3.54557 3.77597 4.30822 4.39868 4.44881 4.81007 4.98470 5.11799 5.24547 5.29989 5.37373 5.39477 5.42407 5.59285 5.68448 5.71677 5.74502 5.84867 5.86553 5.96886 5.98969 5.99524 6.09164 6.13906 6.16461 6.20226 6.23683 6.28922 6.43239 6.49372 6.65548 6.70606 6.71784 6.81475 7.05691 7.09274 7.18037 7.24885 7.32084 7.37089 7.41793 7.46435 7.89523 8.04859 8.27938 8.37772 8.66673 9.00824 9.26406 10.55755 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.004073 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.890538 B = 6872.488110 C = 7754.450232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.071 4.071 3 C -0.159 4.159 4 C -0.068 4.068 5 C -0.110 4.110 6 C -0.168 4.168 7 C 0.187 3.813 8 N -0.540 5.540 9 C 0.192 3.808 10 C -0.582 4.582 11 H 0.076 0.924 12 C 0.117 3.883 13 N -0.831 5.831 14 Si 0.821 3.179 15 H -0.228 1.228 16 H -0.295 1.295 17 H -0.267 1.267 18 C 0.530 3.470 19 O -0.526 6.526 20 C 0.064 3.936 21 H 0.093 0.907 22 C -0.147 4.147 23 N -0.503 5.503 24 C 0.026 3.974 25 C 0.028 3.972 26 C 0.516 3.484 27 N -0.863 5.863 28 O -0.518 6.518 29 C -0.152 4.152 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.123 0.877 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.269 0.731 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.036 0.964 47 H 0.109 0.891 48 H 0.065 0.935 49 H 0.399 0.601 50 H 0.399 0.601 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 -3.930 -8.186 9.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.071 4.071 3 C -0.178 4.178 4 C -0.068 4.068 5 C -0.167 4.167 6 C -0.188 4.188 7 C 0.091 3.909 8 N -0.263 5.263 9 C 0.075 3.925 10 C -0.617 4.617 11 H 0.094 0.906 12 C -0.095 4.095 13 N -0.461 5.461 14 Si 0.646 3.354 15 H -0.151 1.151 16 H -0.222 1.222 17 H -0.192 1.192 18 C 0.319 3.681 19 O -0.403 6.403 20 C -0.046 4.046 21 H 0.110 0.890 22 C -0.204 4.204 23 N -0.228 5.228 24 C -0.121 4.121 25 C -0.103 4.103 26 C 0.301 3.699 27 N -0.428 5.428 28 O -0.392 6.392 29 C -0.172 4.172 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.141 0.859 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.055 0.945 47 H 0.127 0.873 48 H 0.082 0.918 49 H 0.226 0.774 50 H 0.229 0.771 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.112 -3.556 -8.462 9.179 hybrid contribution 1.166 0.484 0.992 1.606 sum 1.278 -3.071 -7.470 8.177 Atomic orbital electron populations 1.20698 0.91752 1.02138 1.01714 1.19718 0.95550 0.92850 0.99010 1.20603 0.93235 0.96971 1.07016 1.19441 0.93703 0.94266 0.99409 1.20740 0.99779 0.94386 1.01754 1.20615 0.99754 0.91149 1.07289 1.17853 0.91305 0.85879 0.95901 1.47225 1.14669 1.04502 1.59857 1.19791 0.77386 0.98747 0.96576 1.20864 1.42010 1.09781 0.89089 0.90641 1.24912 0.90957 0.98957 0.94708 1.70269 1.26827 1.37225 1.11743 0.87885 0.81937 0.88117 0.77442 1.15121 1.22238 1.19167 1.20270 0.86215 0.85171 0.76424 1.90507 1.18380 1.86396 1.45021 1.21743 0.93672 0.89534 0.99700 0.88954 1.21920 1.00366 1.01851 0.96308 1.61444 1.31951 0.98789 1.30638 1.22476 0.99451 1.03304 0.86913 1.22080 0.94837 0.89722 1.03692 1.20647 0.90416 0.83482 0.75374 1.43873 1.12718 1.07749 1.78492 1.90752 1.20110 1.81583 1.46764 1.21641 0.92943 0.99420 1.03159 0.91654 0.91707 0.92212 0.87159 0.91470 0.91885 0.92079 0.85896 0.93742 0.92954 0.92146 0.91349 0.91416 0.91610 0.91123 0.90717 0.94529 0.87317 0.91751 0.77373 0.77072 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.01 36.00 0.36 -1.29 16 2 C -0.07 -1.36 5.88 -104.65 -0.62 -1.97 16 3 C -0.16 -2.87 9.35 -39.55 -0.37 -3.24 16 4 C -0.07 -1.25 4.64 -104.66 -0.49 -1.74 16 5 C -0.11 -1.61 10.01 36.00 0.36 -1.25 16 6 C -0.17 -3.46 5.00 -39.40 -0.20 -3.66 16 7 C 0.19 4.18 5.38 -83.69 -0.45 3.73 16 8 N -0.54 -11.98 2.62 -114.74 -0.30 -12.28 16 9 C 0.19 4.13 4.80 -5.19 -0.02 4.10 16 10 C -0.58 -14.54 8.44 -34.44 -0.29 -14.84 16 11 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 12 C 0.12 3.11 5.29 -17.82 -0.09 3.02 16 13 N -0.83 -23.29 13.96 55.43 0.77 -22.52 16 14 Si 0.82 19.52 23.38 -169.99 -3.97 15.55 16 15 H -0.23 -5.37 4.32 56.52 0.24 -5.13 16 16 H -0.30 -7.26 7.11 56.52 0.40 -6.85 16 17 H -0.27 -6.04 6.69 56.52 0.38 -5.67 16 18 C 0.53 11.58 5.68 -10.99 -0.06 11.52 16 19 O -0.53 -12.61 13.16 5.55 0.07 -12.54 16 20 C 0.06 1.18 1.66 -68.87 -0.11 1.07 16 21 H 0.09 1.82 5.57 -51.93 -0.29 1.53 16 22 C -0.15 -2.08 8.56 37.16 0.32 -1.77 16 23 N -0.50 -9.19 4.08 -237.73 -0.97 -10.16 16 24 C 0.03 0.53 8.91 60.07 0.54 1.07 16 25 C 0.03 0.38 5.07 -4.98 -0.03 0.35 16 26 C 0.52 7.15 7.71 -10.99 -0.08 7.07 16 27 N -0.86 -7.38 8.87 31.22 0.28 -7.11 16 28 O -0.52 -9.76 15.25 5.55 0.08 -9.67 16 29 C -0.15 -3.36 8.46 -39.39 -0.33 -3.69 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 32 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.12 2.49 4.83 -52.49 -0.25 2.24 16 38 H 0.04 0.95 4.55 -51.93 -0.24 0.71 16 39 H 0.05 0.98 5.99 -51.93 -0.31 0.67 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.07 0.91 7.10 -51.93 -0.37 0.54 16 43 H 0.07 0.72 5.99 -51.93 -0.31 0.41 16 44 H 0.07 1.64 7.28 -51.93 -0.38 1.26 16 45 H 0.07 1.47 5.78 -51.93 -0.30 1.17 16 46 H 0.04 0.77 8.02 -51.93 -0.42 0.36 16 47 H 0.11 1.17 5.54 -51.93 -0.29 0.88 16 48 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 49 H 0.40 2.05 8.83 -40.82 -0.36 1.69 16 50 H 0.40 3.02 8.93 -40.82 -0.36 2.66 16 51 H 0.15 3.65 5.34 -52.49 -0.28 3.37 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -33.71 387.18 -7.45 -41.16 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -7.68 Total: 13.26 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.57 Total: -1.52 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.22 Total: -52.07 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.16 Total: -22.21 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -3.97 Total: 15.55 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.71 -7.45 -41.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052831514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.269 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds