Wall clock time and date at job start Wed Apr 1 2020 05:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38285 * 119.96148 * 2 1 4 4 C 1.38289 * 120.13866 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.96181 * 179.97438 * 4 3 2 6 6 C 1.38103 * 120.07008 * 0.02562 * 4 3 2 7 7 C 1.38873 * 119.93266 * 359.97438 * 6 4 3 8 8 N 1.39928 * 120.07333 * 179.97438 * 7 6 4 9 9 C 1.46506 * 119.99743 * 19.34048 * 8 7 6 10 10 C 1.50703 * 109.46971 * 96.83528 * 9 8 7 11 11 H 1.07994 * 119.99987 * 115.85303 * 10 9 8 12 12 C 1.37874 * 119.99784 * 295.85212 * 10 9 8 13 13 N 1.31522 * 119.99461 * 142.64694 * 12 10 9 14 14 Si 1.86792 * 120.00555 * 322.64579 * 12 10 9 15 15 H 1.48501 * 109.47099 * 96.03379 * 14 12 10 16 16 H 1.48501 * 109.47515 * 216.03671 * 14 12 10 17 17 H 1.48506 * 109.47324 * 336.03642 * 14 12 10 18 18 C 1.34772 * 120.00364 * 199.33592 * 8 7 6 19 19 O 1.21292 * 119.99739 * 4.42372 * 18 8 7 20 20 C 1.50699 * 120.00367 * 184.41920 * 18 8 7 21 21 H 1.09005 * 109.46696 * 27.53009 * 20 18 8 22 22 C 1.53000 * 109.47065 * 267.53102 * 20 18 8 23 23 N 1.46893 * 109.47412 * 147.53000 * 20 18 8 24 24 C 1.46908 * 111.00008 * 293.71936 * 23 20 18 25 25 C 1.46896 * 111.00196 * 169.76348 * 23 20 18 26 26 C 1.50704 * 109.47241 * 190.00189 * 25 23 20 27 27 N 1.34771 * 120.00343 * 179.97438 * 26 25 23 28 28 O 1.21284 * 119.99906 * 359.97438 * 26 25 23 29 29 C 1.38109 * 119.96525 * 180.23328 * 2 1 3 30 30 H 1.08998 * 109.47052 * 90.00083 * 1 2 3 31 31 H 1.08997 * 109.47167 * 210.00115 * 1 2 3 32 32 H 1.08998 * 109.47482 * 329.99991 * 1 2 3 33 33 H 1.08000 * 119.92917 * 359.97438 * 3 2 1 34 34 H 1.09002 * 109.47179 * 270.02174 * 5 4 3 35 35 H 1.09000 * 109.47646 * 30.02060 * 5 4 3 36 36 H 1.08999 * 109.47046 * 150.02416 * 5 4 3 37 37 H 1.08000 * 120.03549 * 179.97438 * 6 4 3 38 38 H 1.08994 * 109.46811 * 336.83479 * 9 8 7 39 39 H 1.08991 * 109.46748 * 216.83390 * 9 8 7 40 40 H 0.97007 * 119.99737 * 179.97438 * 13 12 10 41 41 H 1.08996 * 109.47375 * 301.75675 * 22 20 18 42 42 H 1.09002 * 109.47101 * 61.75871 * 22 20 18 43 43 H 1.08997 * 109.47016 * 181.75104 * 22 20 18 44 44 H 1.08998 * 109.46777 * 67.99309 * 24 23 20 45 45 H 1.09001 * 109.46679 * 187.98964 * 24 23 20 46 46 H 1.09000 * 109.46976 * 307.99053 * 24 23 20 47 47 H 1.08994 * 109.47140 * 310.00074 * 25 23 20 48 48 H 1.08993 * 109.47022 * 70.00101 * 25 23 20 49 49 H 0.97006 * 119.99825 * 359.97438 * 27 26 25 50 50 H 0.96998 * 120.00618 * 180.02562 * 27 26 25 51 51 H 1.07993 * 120.03809 * 0.03935 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1980 0.0000 4 6 3.5805 1.2023 0.0005 5 6 4.3290 2.5102 -0.0001 6 6 4.2761 0.0093 0.0005 7 6 3.5856 -1.1955 0.0005 8 7 4.2874 -2.4060 0.0000 9 6 5.6907 -2.4393 0.4197 10 6 5.7726 -2.8520 1.8667 11 1 6.2591 -3.7774 2.1376 12 6 5.2265 -2.0482 2.8448 13 7 4.6282 -2.5902 3.8831 14 14 5.3364 -0.1895 2.6954 15 1 4.0834 0.3337 2.0943 16 1 5.5250 0.4052 4.0430 17 1 6.4884 0.1703 1.8300 18 6 3.6726 -3.5414 -0.3865 19 8 2.5367 -3.5020 -0.8097 20 6 4.3965 -4.8598 -0.2928 21 1 5.1376 -4.8115 0.5052 22 6 5.0961 -5.1530 -1.6215 23 7 3.4318 -5.9285 -0.0011 24 6 2.8481 -5.7601 1.3364 25 6 4.0539 -7.2519 -0.1412 26 6 2.9892 -8.3166 -0.0781 27 7 3.3288 -9.6164 -0.1857 28 8 1.8268 -8.0038 0.0696 29 6 2.1968 -1.1965 -0.0049 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6558 2.1323 -0.0004 34 1 4.5096 2.8251 -1.0279 35 1 3.7371 3.2679 0.5133 36 1 5.2819 2.3837 0.5139 37 1 5.3561 0.0133 0.0005 38 1 6.1295 -1.4489 0.2989 39 1 6.2365 -3.1558 -0.1940 40 1 4.2443 -2.0247 4.5714 41 1 4.3590 -5.1704 -2.4242 42 1 5.8342 -4.3765 -1.8226 43 1 5.5938 -6.1210 -1.5642 44 1 2.2166 -4.8717 1.3480 45 1 2.2479 -6.6358 1.5837 46 1 3.6465 -5.6479 2.0699 47 1 4.5704 -7.3110 -1.0991 48 1 4.7689 -7.4046 0.6671 49 1 4.2585 -9.8666 -0.3042 50 1 2.6435 -10.3017 -0.1454 51 1 1.6569 -2.1317 -0.0093 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052831514.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:33 Heat of formation + Delta-G solvation = -36.264053 kcal Electronic energy + Delta-G solvation = -32829.130932 eV Core-core repulsion = 28728.711625 eV Total energy + Delta-G solvation = -4100.419307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.92349 -40.72683 -39.79594 -37.70080 -37.02801 -34.62618 -34.60683 -34.42256 -32.85105 -31.40046 -29.79929 -29.44169 -28.11952 -27.55662 -25.92681 -24.92205 -24.53248 -22.49309 -21.54712 -21.15243 -20.00684 -19.07038 -18.25228 -18.20885 -17.83948 -17.66258 -16.89251 -16.72235 -16.65235 -16.21550 -15.93775 -15.62688 -15.44801 -15.14967 -14.98976 -14.70037 -14.56812 -14.32196 -14.15537 -14.10024 -13.97087 -13.54908 -13.49134 -13.38397 -13.24944 -13.12446 -12.83159 -12.66970 -12.53259 -12.49416 -12.37432 -12.27900 -12.21024 -12.08882 -11.76894 -11.69343 -10.92228 -10.73257 -10.57967 -10.40871 -10.28195 -9.29239 -9.24520 -8.61199 -8.54180 -6.38911 0.39904 0.48783 1.35862 1.39316 1.49409 1.68982 1.70029 2.10828 2.34912 2.48611 2.80390 2.96544 3.08718 3.62275 3.91029 3.93376 4.03099 4.05745 4.18558 4.24875 4.31111 4.32833 4.37761 4.47521 4.48892 4.52381 4.54654 4.59318 4.68024 4.72764 4.77003 4.82384 4.86559 4.90137 4.93799 4.99300 5.02895 5.09309 5.20785 5.28424 5.42175 5.50058 5.61303 5.74923 5.80218 5.86511 5.89300 6.00284 6.05995 6.31786 6.50851 6.56381 6.71963 7.24325 7.33098 7.44530 8.54874 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.004073 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.890538 B = 6872.488110 C = 7754.450232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.075 4.075 3 C -0.159 4.159 4 C -0.067 4.067 5 C -0.110 4.110 6 C -0.183 4.183 7 C 0.161 3.839 8 N -0.546 5.546 9 C 0.198 3.802 10 C -0.578 4.578 11 H 0.053 0.947 12 C 0.072 3.928 13 N -0.878 5.878 14 Si 0.872 3.128 15 H -0.226 1.226 16 H -0.309 1.309 17 H -0.244 1.244 18 C 0.519 3.481 19 O -0.556 6.556 20 C 0.069 3.931 21 H 0.078 0.922 22 C -0.140 4.140 23 N -0.518 5.518 24 C 0.048 3.952 25 C 0.025 3.975 26 C 0.515 3.485 27 N -0.833 5.833 28 O -0.578 6.578 29 C -0.185 4.185 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.148 0.852 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.126 0.874 38 H 0.054 0.946 39 H 0.081 0.919 40 H 0.265 0.735 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.028 0.972 45 H 0.078 0.922 46 H 0.018 0.982 47 H 0.145 0.855 48 H 0.085 0.915 49 H 0.419 0.581 50 H 0.408 0.592 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 -2.834 -10.242 11.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.076 4.076 3 C -0.177 4.177 4 C -0.068 4.068 5 C -0.166 4.166 6 C -0.204 4.204 7 C 0.065 3.935 8 N -0.267 5.267 9 C 0.080 3.920 10 C -0.614 4.614 11 H 0.071 0.929 12 C -0.136 4.136 13 N -0.511 5.511 14 Si 0.696 3.304 15 H -0.150 1.150 16 H -0.237 1.237 17 H -0.168 1.168 18 C 0.309 3.691 19 O -0.435 6.435 20 C -0.042 4.042 21 H 0.096 0.904 22 C -0.198 4.198 23 N -0.243 5.243 24 C -0.101 4.101 25 C -0.105 4.105 26 C 0.300 3.700 27 N -0.399 5.399 28 O -0.457 6.457 29 C -0.205 4.205 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.166 0.834 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.125 0.875 44 H 0.047 0.953 45 H 0.097 0.903 46 H 0.037 0.963 47 H 0.162 0.838 48 H 0.103 0.897 49 H 0.251 0.749 50 H 0.240 0.760 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.665 -2.502 -10.552 10.972 hybrid contribution 0.680 0.061 1.582 1.723 sum 2.345 -2.441 -8.971 9.588 Atomic orbital electron populations 1.20750 0.89439 1.02890 1.02967 1.20151 0.97448 0.92389 0.97569 1.21038 0.93399 0.97777 1.05510 1.20002 0.94357 0.95270 0.97161 1.20849 0.99492 0.92582 1.03719 1.20763 0.99947 0.91321 1.08358 1.18157 0.91657 0.86544 0.97149 1.47035 1.14766 1.05004 1.59940 1.19773 0.77461 0.99959 0.94803 1.21075 1.40717 1.08650 0.90943 0.92862 1.25595 0.90912 1.02496 0.94627 1.70372 1.29256 1.38286 1.13168 0.87127 0.82639 0.83813 0.76776 1.14952 1.23716 1.16768 1.20993 0.86125 0.86270 0.75712 1.90491 1.19645 1.86927 1.46450 1.21735 0.92837 0.88000 1.01627 0.90437 1.21958 1.00147 1.04488 0.93162 1.61348 1.33130 1.01135 1.28697 1.22134 0.98315 1.01389 0.88230 1.22291 0.94990 0.86959 1.06278 1.20751 0.89489 0.84974 0.74834 1.43579 1.14315 1.06045 1.75953 1.90740 1.22278 1.82698 1.49981 1.21573 0.93332 0.99641 1.05961 0.90043 0.92940 0.89444 0.83429 0.88937 0.89708 0.92172 0.85617 0.92846 0.90044 0.92560 0.91954 0.90349 0.87533 0.95344 0.90344 0.96301 0.83764 0.89740 0.74895 0.76043 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.12 10.01 71.23 0.71 -2.40 16 2 C -0.07 -2.84 5.88 -19.88 -0.12 -2.95 16 3 C -0.16 -5.29 9.35 22.29 0.21 -5.08 16 4 C -0.07 -2.32 4.64 -19.89 -0.09 -2.41 16 5 C -0.11 -2.77 10.01 71.23 0.71 -2.06 16 6 C -0.18 -7.36 5.00 22.39 0.11 -7.25 16 7 C 0.16 7.30 5.38 38.15 0.21 7.50 16 8 N -0.55 -24.70 2.62 -635.30 -1.67 -26.37 16 9 C 0.20 8.44 4.80 85.63 0.41 8.85 16 10 C -0.58 -29.48 8.44 25.60 0.22 -29.26 16 11 H 0.05 2.89 7.87 -2.91 -0.02 2.87 16 12 C 0.07 3.91 5.29 84.65 0.45 4.36 16 13 N -0.88 -51.60 13.96 21.45 0.30 -51.30 16 14 Si 0.87 40.72 23.38 68.60 1.60 42.32 16 15 H -0.23 -10.42 4.32 99.48 0.43 -9.99 16 16 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 17 H -0.24 -10.35 6.69 99.48 0.67 -9.69 16 18 C 0.52 23.49 5.68 87.66 0.50 23.99 16 19 O -0.56 -28.25 13.16 -3.07 -0.04 -28.29 16 20 C 0.07 2.55 1.66 44.17 0.07 2.62 16 21 H 0.08 3.09 5.57 -2.38 -0.01 3.08 16 22 C -0.14 -3.67 8.56 71.98 0.62 -3.05 16 23 N -0.52 -19.26 4.08 -906.05 -3.69 -22.96 16 24 C 0.05 2.08 8.91 127.69 1.14 3.22 16 25 C 0.02 0.63 5.07 85.56 0.43 1.06 16 26 C 0.51 13.71 7.71 87.66 0.68 14.39 16 27 N -0.83 -12.25 8.87 -173.53 -1.54 -13.79 16 28 O -0.58 -22.19 15.25 -3.04 -0.05 -22.24 16 29 C -0.18 -8.49 8.46 22.39 0.19 -8.30 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 1.68 8.09 -2.39 -0.02 1.66 16 32 H 0.09 2.12 8.08 -2.39 -0.02 2.10 16 33 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 1.78 8.09 -2.39 -0.02 1.77 16 36 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 37 H 0.13 4.86 4.83 -2.91 -0.01 4.85 16 38 H 0.05 2.20 4.55 -2.39 -0.01 2.19 16 39 H 0.08 2.94 5.99 -2.39 -0.01 2.93 16 40 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 1.90 7.10 -2.39 -0.02 1.88 16 43 H 0.11 1.88 5.99 -2.39 -0.01 1.86 16 44 H 0.03 1.43 7.28 -2.39 -0.02 1.41 16 45 H 0.08 3.30 5.78 -2.39 -0.01 3.29 16 46 H 0.02 0.85 8.02 -2.39 -0.02 0.83 16 47 H 0.14 2.56 5.54 -2.39 -0.01 2.55 16 48 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 49 H 0.42 2.83 8.83 -92.70 -0.82 2.01 16 50 H 0.41 5.31 8.93 -92.71 -0.83 4.48 16 51 H 0.12 6.38 5.34 -2.97 -0.02 6.37 16 Total: -1.00 -80.50 387.18 0.38 -80.12 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.98 Total: 39.28 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 6.44 Total: 3.22 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -6.60 Total: -114.42 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.09 Total: -50.53 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.60 Total: 42.32 kcal Total: -80.50 0.38 -80.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052831514.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.856 kcal (2) G-P(sol) polarization free energy of solvation -80.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds