Wall clock time and date at job start Wed Apr 1 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38285 * 119.92971 * 2 1 4 4 C 1.38109 * 120.07152 * 180.25664 * 3 2 1 5 5 C 1.38874 * 119.92524 * 359.47349 * 4 3 2 6 6 N 1.39949 * 120.06738 * 180.29960 * 5 4 3 7 7 C 1.34768 * 119.99982 * 144.91088 * 6 5 4 8 8 O 1.21581 * 120.00166 * 4.58503 * 7 6 5 9 9 N 1.34776 * 120.00000 * 184.58705 * 7 6 5 10 10 C 1.46503 * 119.99814 * 0.02562 * 9 7 6 11 11 C 1.50701 * 109.47351 * 89.99882 * 10 9 7 12 12 H 1.08001 * 119.99677 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00103 * 180.02562 * 11 10 9 14 14 N 1.31509 * 119.99888 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00163 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47012 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47493 * 119.99784 * 15 13 11 18 18 H 1.48496 * 109.47201 * 240.00068 * 15 13 11 19 19 C 1.46499 * 120.00131 * 179.97438 * 9 7 6 20 20 C 1.53005 * 109.46730 * 90.00461 * 19 9 7 21 21 N 1.46908 * 109.46851 * 180.02562 * 20 19 9 22 22 C 1.47015 * 110.99926 * 293.63263 * 21 20 19 23 23 C 1.53092 * 109.25601 * 177.60842 * 22 21 20 24 24 O 1.43016 * 109.25826 * 56.84930 * 23 22 21 25 25 C 1.43015 * 113.73942 * 301.32910 * 24 23 22 26 26 C 1.47016 * 110.99648 * 169.99973 * 21 20 19 27 27 C 1.38867 * 119.86365 * 0.27638 * 5 4 3 28 28 C 1.38111 * 119.92631 * 359.97438 * 27 5 4 29 29 H 1.09004 * 109.46476 * 270.25077 * 1 2 3 30 30 H 1.09001 * 109.47091 * 30.24970 * 1 2 3 31 31 H 1.08992 * 109.47192 * 150.24852 * 1 2 3 32 32 H 1.08006 * 119.96205 * 0.03522 * 3 2 1 33 33 H 1.07995 * 120.03896 * 179.74742 * 4 3 2 34 34 H 0.97000 * 119.99468 * 324.90249 * 6 5 4 35 35 H 1.09004 * 109.46838 * 209.99868 * 10 9 7 36 36 H 1.08997 * 109.47019 * 329.99702 * 10 9 7 37 37 H 0.97001 * 120.00276 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.47014 * 209.99944 * 19 9 7 39 39 H 1.09000 * 109.47559 * 330.00226 * 19 9 7 40 40 H 1.08994 * 109.46955 * 299.99995 * 20 19 9 41 41 H 1.08997 * 109.47045 * 60.00328 * 20 19 9 42 42 H 1.09005 * 109.50808 * 297.54511 * 22 21 20 43 43 H 1.09002 * 109.50696 * 57.67521 * 22 21 20 44 44 H 1.08998 * 109.51083 * 296.91145 * 23 22 21 45 45 H 1.09000 * 109.54435 * 176.80291 * 23 22 21 46 46 H 1.09000 * 109.50426 * 298.73303 * 25 24 23 47 47 H 1.08996 * 109.54117 * 178.62570 * 25 24 23 48 48 H 1.09002 * 109.50657 * 302.32714 * 26 21 20 49 49 H 1.08995 * 109.50662 * 62.41739 * 26 21 20 50 50 H 1.07993 * 120.03398 * 180.02562 * 27 5 4 51 51 H 1.07999 * 119.96732 * 179.97438 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2019 -0.0054 5 6 4.2739 0.0000 0.0003 6 7 5.6734 0.0001 0.0013 7 6 6.3468 -0.9520 0.6768 8 8 5.7415 -1.8583 1.2157 9 7 7.6913 -0.8995 0.7549 10 6 8.4206 0.1928 0.1059 11 6 8.5714 1.3397 1.0719 12 1 8.1651 1.2624 2.0695 13 6 9.2282 2.4876 0.6819 14 7 9.7234 2.5814 -0.5327 15 14 9.4146 3.9095 1.8790 16 1 8.7740 3.5558 3.1712 17 1 10.8570 4.1847 2.1000 18 1 8.7604 5.1184 1.3173 19 6 8.4233 -1.9342 1.4897 20 6 8.7789 -3.0794 0.5394 21 7 9.5124 -4.1172 1.2763 22 6 10.8228 -3.6209 1.7212 23 6 11.5264 -4.7112 2.5337 24 8 11.6371 -5.8947 1.7385 25 6 10.3794 -6.4058 1.2886 26 6 9.6643 -5.3328 0.4635 27 6 3.5781 -1.2018 0.0056 28 6 2.1970 -1.1984 0.0056 29 1 -0.3632 0.0045 1.0277 30 1 -0.3633 0.8877 -0.5177 31 1 -0.3633 -0.8921 -0.5099 32 1 1.6552 2.1328 0.0006 33 1 4.1164 2.1381 -0.0095 34 1 6.1586 0.6853 -0.4844 35 1 9.4067 -0.1587 -0.1976 36 1 7.8680 0.5275 -0.7720 37 1 10.1858 3.3888 -0.8070 38 1 9.3373 -1.5081 1.9033 39 1 7.8006 -2.3141 2.2996 40 1 7.8649 -3.5054 0.1258 41 1 9.4017 -2.6995 -0.2704 42 1 11.4296 -3.3658 0.8522 43 1 10.6851 -2.7358 2.3422 44 1 10.9463 -4.9282 3.4306 45 1 12.5216 -4.3692 2.8178 46 1 9.7660 -6.6722 2.1493 47 1 10.5445 -7.2893 0.6719 48 1 8.6808 -5.6972 0.1665 49 1 10.2518 -5.1049 -0.4258 50 1 4.1164 -2.1380 0.0104 51 1 1.6553 -2.1326 0.0093 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074394419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:21 Heat of formation + Delta-G solvation = -37.509629 kcal Electronic energy + Delta-G solvation = -30880.376620 eV Core-core repulsion = 26779.903300 eV Total energy + Delta-G solvation = -4100.473320 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.23410 -39.52718 -38.53035 -36.28005 -34.91412 -34.54435 -32.69919 -31.38180 -31.15877 -30.62238 -29.59702 -27.36396 -26.52370 -25.31176 -24.03800 -23.12130 -22.65935 -22.22010 -20.91954 -20.31541 -19.20920 -17.75044 -16.95049 -16.66288 -16.42708 -16.15294 -15.38040 -15.23479 -15.09618 -15.02367 -14.96607 -14.68247 -14.48354 -13.97729 -13.79749 -13.63243 -13.47930 -13.21580 -13.10059 -12.67639 -12.61478 -12.30766 -12.19285 -12.03028 -11.87534 -11.62493 -11.46231 -11.38835 -11.32729 -11.01325 -10.88798 -10.85332 -10.70362 -10.42969 -10.21186 -9.89673 -9.72710 -9.69617 -9.35855 -8.68937 -8.61234 -8.36490 -7.94461 -7.46815 -6.29235 -4.37756 1.60778 1.71777 3.15122 3.19135 3.24701 3.30700 3.64914 3.77478 3.93248 4.18680 4.24920 4.63138 4.84875 4.99019 5.01771 5.03962 5.06391 5.08935 5.11376 5.24577 5.31688 5.41518 5.44266 5.51786 5.54865 5.62248 5.64089 5.70519 5.75072 5.81183 5.81496 5.93153 5.94276 5.99689 6.06960 6.19635 6.31199 6.41749 6.55263 6.61138 6.72390 6.87035 6.95729 6.96742 6.98332 7.03607 7.09224 7.28932 7.47207 7.66377 7.69456 7.92085 8.47148 8.74410 9.17657 9.32510 10.76913 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007015 B = 0.003514 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3990.574765 B = 7965.893966 C =11482.500510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.121 4.121 3 C -0.102 4.102 4 C -0.148 4.148 5 C 0.177 3.823 6 N -0.683 5.683 7 C 0.709 3.291 8 O -0.601 6.601 9 N -0.609 5.609 10 C 0.240 3.760 11 C -0.540 4.540 12 H 0.063 0.937 13 C 0.066 3.934 14 N -0.890 5.890 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.144 3.856 20 C 0.043 3.957 21 N -0.532 5.532 22 C 0.012 3.988 23 C 0.065 3.935 24 O -0.389 6.389 25 C 0.065 3.935 26 C 0.019 3.981 27 C -0.121 4.121 28 C -0.105 4.105 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.417 0.583 35 H 0.038 0.962 36 H 0.030 0.970 37 H 0.266 0.734 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.044 0.956 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.059 0.941 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.041 0.959 50 H 0.140 0.860 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 -9.775 -0.020 11.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.122 4.122 3 C -0.121 4.121 4 C -0.169 4.169 5 C 0.081 3.919 6 N -0.331 5.331 7 C 0.411 3.589 8 O -0.481 6.481 9 N -0.343 5.343 10 C 0.120 3.880 11 C -0.579 4.579 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.529 5.529 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.020 3.980 20 C -0.086 4.086 21 N -0.258 5.258 22 C -0.116 4.116 23 C -0.012 4.012 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 C -0.142 4.142 28 C -0.123 4.123 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.256 0.744 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.103 0.897 49 H 0.059 0.941 50 H 0.158 0.842 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.580 -10.495 0.628 12.403 hybrid contribution 0.806 1.809 -0.399 2.020 sum -5.774 -8.686 0.229 10.433 Atomic orbital electron populations 1.20693 0.91705 1.02150 1.01783 1.19791 0.95701 0.93286 1.03405 1.20715 0.93257 0.97319 1.00791 1.20955 0.94380 0.96922 1.04674 1.17630 0.82300 0.93748 0.98271 1.42864 1.04133 1.32537 1.53559 1.15792 0.82245 0.81789 0.79044 1.90818 1.67815 1.36694 1.52785 1.47347 1.03643 1.27675 1.55616 1.19360 0.92379 0.83682 0.92627 1.21550 1.37127 0.99403 0.99780 0.91865 1.24948 0.94880 0.98558 0.95344 1.69924 1.36884 1.28458 1.17594 0.86446 0.77982 0.81894 0.81240 1.19613 1.20787 1.20779 1.21053 0.96740 0.86507 0.93734 1.22545 0.97931 0.92306 0.95779 1.62145 1.17781 1.05413 1.40476 1.22885 0.89819 0.98874 1.00056 1.22681 1.00882 0.84458 0.93219 1.87956 1.29345 1.43004 1.70480 1.22640 0.85073 0.95470 0.98004 1.22759 1.01154 0.91765 0.95314 1.21336 0.93822 0.98222 1.00817 1.20863 0.93685 0.97207 1.00589 0.91759 0.92018 0.92013 0.86229 0.85643 0.74366 0.94378 0.95270 0.92460 0.90410 0.89958 0.90545 0.94460 0.93762 0.88860 0.92238 0.88507 0.92276 0.88719 0.89701 0.94078 0.84245 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.01 36.01 0.36 -0.68 16 2 C -0.12 -1.60 5.88 -104.59 -0.62 -2.21 16 3 C -0.10 -1.39 9.69 -39.61 -0.38 -1.78 16 4 C -0.15 -2.33 9.97 -39.39 -0.39 -2.73 16 5 C 0.18 3.15 6.30 -83.68 -0.53 2.62 16 6 N -0.68 -13.12 5.22 -14.22 -0.07 -13.20 16 7 C 0.71 14.81 8.12 -86.93 -0.71 14.10 16 8 O -0.60 -13.37 13.36 5.29 0.07 -13.30 16 9 N -0.61 -12.41 2.46 -180.80 -0.44 -12.85 16 10 C 0.24 5.40 4.97 -5.19 -0.03 5.38 16 11 C -0.54 -13.49 9.39 -34.44 -0.32 -13.81 16 12 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 13 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -23.57 13.29 55.43 0.74 -22.83 16 15 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 19 C 0.14 2.61 5.34 -4.04 -0.02 2.58 16 20 C 0.04 0.69 5.28 -3.82 -0.02 0.67 16 21 N -0.53 -7.48 4.73 -234.30 -1.11 -8.59 16 22 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 23 C 0.06 0.74 7.01 37.20 0.26 1.00 16 24 O -0.39 -4.97 10.83 -35.23 -0.38 -5.35 16 25 C 0.07 0.71 7.01 37.21 0.26 0.97 16 26 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 27 C -0.12 -2.07 8.70 -39.40 -0.34 -2.42 16 28 C -0.10 -1.51 9.69 -39.61 -0.38 -1.89 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 32 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.42 7.99 6.52 -40.82 -0.27 7.72 16 35 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 36 H 0.03 0.68 6.30 -51.93 -0.33 0.35 16 37 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 38 H 0.08 1.39 6.45 -51.93 -0.33 1.06 16 39 H 0.08 1.57 7.42 -51.93 -0.39 1.18 16 40 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 41 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 49 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.14 2.57 6.22 -52.49 -0.33 2.24 16 51 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 409.68 15.07 6.17 6.17 Total: -1.00 -28.83 409.68 -11.31 -40.14 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -8.26 Total: 11.03 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -3.00 Total: 3.73 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.89 Total: -57.47 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.31 Total: -18.65 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -28.83 -11.31 -40.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074394419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.629 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds