Wall clock time and date at job start Wed Apr 1 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38116 * 120.03767 * 2 1 4 4 C 1.38275 * 120.07311 * 179.72577 * 3 2 1 5 5 C 1.38281 * 120.14125 * 0.27246 * 4 3 2 6 6 C 1.38111 * 120.07227 * 359.96075 * 5 4 3 7 7 C 1.50693 * 120.03895 * 180.02562 * 6 5 4 8 8 C 1.38874 * 119.92795 * 0.02562 * 6 5 4 9 9 N 1.39924 * 120.07372 * 180.02562 * 8 6 5 10 10 C 1.34780 * 119.99801 * 244.28489 * 9 8 6 11 11 O 1.21288 * 120.00239 * 4.82787 * 10 9 8 12 12 C 1.50696 * 119.99632 * 184.82868 * 10 9 8 13 13 N 1.46508 * 109.47015 * 179.97438 * 12 10 9 14 14 C 1.34771 * 119.99791 * 179.97438 * 13 12 10 15 15 O 1.21277 * 120.00799 * 0.02562 * 14 13 12 16 16 C 1.50708 * 119.99756 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.46799 * 300.00185 * 16 14 13 18 18 C 1.53000 * 109.47078 * 59.99780 * 16 14 13 19 19 N 1.46900 * 109.47162 * 179.97438 * 16 14 13 20 20 C 1.46900 * 111.00032 * 298.95578 * 19 16 14 21 21 C 1.46893 * 110.99843 * 174.99989 * 19 16 14 22 22 C 1.50700 * 109.46983 * 190.00232 * 21 19 16 23 23 H 1.07991 * 120.00357 * 0.02562 * 22 21 19 24 24 C 1.37881 * 119.99739 * 179.97438 * 22 21 19 25 25 N 1.31511 * 120.00161 * 0.02562 * 24 22 21 26 26 Si 1.86809 * 119.99770 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47076 * 89.99913 * 26 24 22 28 28 H 1.48497 * 109.47046 * 210.00079 * 26 24 22 29 29 H 1.48495 * 109.46899 * 330.00241 * 26 24 22 30 30 H 1.09002 * 109.47202 * 96.71569 * 1 2 3 31 31 H 1.08992 * 109.47033 * 216.71144 * 1 2 3 32 32 H 1.09003 * 109.47059 * 336.71916 * 1 2 3 33 33 H 1.08007 * 119.96316 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.93262 * 180.25484 * 4 3 2 35 35 H 1.08002 * 119.96492 * 179.97438 * 5 4 3 36 36 H 1.09006 * 109.46992 * 89.99839 * 7 6 5 37 37 H 1.08998 * 109.47456 * 209.99902 * 7 6 5 38 38 H 1.09003 * 109.47096 * 330.00368 * 7 6 5 39 39 H 0.97002 * 120.00257 * 64.27574 * 9 8 6 40 40 H 1.09000 * 109.47410 * 299.99530 * 12 10 9 41 41 H 1.08999 * 109.47390 * 59.99914 * 12 10 9 42 42 H 0.97000 * 119.99289 * 0.02562 * 13 12 10 43 43 H 1.08996 * 109.47072 * 179.97438 * 18 16 14 44 44 H 1.08997 * 109.47434 * 300.00702 * 18 16 14 45 45 H 1.09012 * 109.46658 * 60.00318 * 18 16 14 46 46 H 1.09004 * 109.47073 * 59.99801 * 20 19 16 47 47 H 1.08995 * 109.46744 * 180.02562 * 20 19 16 48 48 H 1.08999 * 109.46599 * 299.99980 * 20 19 16 49 49 H 1.09005 * 109.47117 * 309.99933 * 21 19 16 50 50 H 1.09000 * 109.47151 * 70.00080 * 21 19 16 51 51 H 0.97007 * 119.99918 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5811 1.1965 0.0057 5 6 4.2762 0.0011 0.0058 6 6 3.5909 -1.1979 0.0009 7 6 4.3491 -2.5002 0.0016 8 6 2.2022 -1.2022 -0.0045 9 7 1.5048 -2.4153 -0.0089 10 6 0.7340 -2.7456 -1.0641 11 8 0.7131 -2.0343 -2.0462 12 6 -0.1020 -3.9988 -1.0234 13 7 -0.8432 -4.1324 -2.2801 14 6 -1.6616 -5.1859 -2.4710 15 8 -1.7851 -6.0233 -1.6024 16 6 -2.4236 -5.3236 -3.7639 17 1 -3.0728 -4.4583 -3.8969 18 6 -1.4374 -5.4055 -4.9308 19 7 -3.2377 -6.5458 -3.7248 20 6 -2.3918 -7.7371 -3.5713 21 6 -4.0851 -6.6523 -4.9199 22 6 -5.0750 -7.7735 -4.7354 23 1 -5.0750 -8.3491 -3.8217 24 6 -5.9816 -8.0638 -5.7329 25 7 -5.9820 -7.3626 -6.8455 26 14 -7.2082 -9.4541 -5.5046 27 1 -8.4453 -8.9245 -4.8764 28 1 -7.5381 -10.0452 -6.8262 29 1 -6.6164 -10.4975 -4.6294 30 1 -0.3634 -0.1202 -1.0206 31 1 -0.3633 -0.8238 0.6143 32 1 -0.3633 0.9440 0.4062 33 1 1.6584 2.1310 0.0004 34 1 4.1194 2.1328 0.0099 35 1 5.3562 0.0051 0.0098 36 1 4.5279 -2.8160 1.0295 37 1 3.7649 -3.2611 -0.5159 38 1 5.3031 -2.3654 -0.5082 39 1 1.5761 -3.0185 0.7473 40 1 0.5470 -4.8643 -0.8902 41 1 -0.8046 -3.9401 -0.1921 42 1 -0.7441 -3.4629 -2.9750 43 1 -1.9885 -5.5055 -5.8659 44 1 -0.8330 -4.4989 -4.9600 45 1 -0.7881 -6.2709 -4.7977 46 1 -1.8263 -7.6639 -2.6423 47 1 -3.0198 -8.6276 -3.5457 48 1 -1.7018 -7.8035 -4.4124 49 1 -4.6213 -5.7152 -5.0698 50 1 -3.4618 -6.8575 -5.7902 51 1 -6.6201 -7.5666 -7.5471 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078645404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:06 Heat of formation + Delta-G solvation = -34.824609 kcal Electronic energy + Delta-G solvation = -30251.368378 eV Core-core repulsion = 26151.011489 eV Total energy + Delta-G solvation = -4100.356888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16103 -39.86886 -38.90767 -36.46952 -35.25732 -34.39491 -33.95291 -32.67917 -31.38280 -30.37045 -28.38526 -27.05858 -27.02495 -26.87027 -25.26649 -23.67842 -22.49025 -21.37726 -20.83944 -20.68202 -19.55683 -18.21143 -17.45283 -16.64245 -16.49982 -16.20319 -16.03506 -15.57074 -15.49825 -14.89274 -14.46871 -14.41753 -14.28641 -14.06163 -13.92931 -13.68833 -13.53238 -13.35942 -13.32351 -13.11286 -12.83579 -12.79033 -12.31998 -12.23925 -11.98134 -11.85107 -11.68370 -11.61758 -11.44390 -11.05652 -10.93347 -10.80882 -10.60680 -10.48017 -10.36826 -10.11001 -9.94095 -9.33542 -9.14639 -8.98861 -8.94964 -8.81228 -8.39514 -7.14815 -5.99539 -3.99744 0.84852 0.97392 2.11863 2.47174 2.91358 3.30647 3.32384 3.35805 3.41299 3.46269 4.20486 4.36442 4.41913 4.46603 4.57457 4.86531 4.95871 4.96780 5.01379 5.05100 5.06194 5.13852 5.17537 5.21763 5.34340 5.36434 5.38646 5.42730 5.50622 5.56799 5.65930 5.86063 5.95506 5.96653 6.03319 6.12362 6.14660 6.19107 6.27040 6.37453 6.48159 6.59379 6.63465 6.87729 7.01308 7.29209 7.37814 7.55992 7.69613 7.85093 8.10050 8.23655 8.45886 8.59227 9.08323 9.63987 11.11396 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027305 B = 0.001791 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.214838 B =15628.536228 C =15918.779753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.067 4.067 3 C -0.118 4.118 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.084 4.084 7 C -0.115 4.115 8 C 0.133 3.867 9 N -0.677 5.677 10 C 0.513 3.487 11 O -0.514 6.514 12 C 0.104 3.896 13 N -0.728 5.728 14 C 0.526 3.474 15 O -0.519 6.519 16 C 0.067 3.933 17 H 0.102 0.898 18 C -0.183 4.183 19 N -0.517 5.517 20 C 0.023 3.977 21 C 0.192 3.808 22 C -0.504 4.504 23 H 0.064 0.936 24 C 0.054 3.946 25 N -0.900 5.900 26 Si 0.899 3.101 27 H -0.280 1.280 28 H -0.288 1.288 29 H -0.274 1.274 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.411 0.589 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.410 0.590 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.008 0.992 49 H 0.029 0.971 50 H -0.004 1.004 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.446 16.656 15.987 32.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.069 4.069 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.138 4.138 6 C -0.086 4.086 7 C -0.172 4.172 8 C 0.041 3.959 9 N -0.327 5.327 10 C 0.300 3.700 11 O -0.388 6.388 12 C -0.024 4.024 13 N -0.386 5.386 14 C 0.313 3.687 15 O -0.393 6.393 16 C -0.046 4.046 17 H 0.120 0.880 18 C -0.242 4.242 19 N -0.241 5.241 20 C -0.125 4.125 21 C 0.068 3.932 22 C -0.543 4.543 23 H 0.083 0.917 24 C -0.147 4.147 25 N -0.540 5.540 26 Si 0.727 3.273 27 H -0.207 1.207 28 H -0.214 1.214 29 H -0.198 1.198 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.248 0.752 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.248 0.752 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.027 0.973 49 H 0.047 0.953 50 H 0.014 0.986 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 21.865 16.541 16.130 31.810 hybrid contribution -0.026 -0.584 -0.675 0.893 sum 21.839 15.957 15.455 31.152 Atomic orbital electron populations 1.20830 0.90786 1.02555 1.03247 1.19990 0.96431 0.92102 0.98350 1.20944 0.94225 0.97174 1.01312 1.21161 0.94222 0.98109 0.99520 1.20895 0.99806 0.91478 1.01637 1.19978 0.92284 0.96163 1.00164 1.20753 0.99955 0.94081 1.02384 1.17157 0.89691 0.84948 1.04074 1.43240 1.47966 1.20146 1.21379 1.20819 0.79515 0.87257 0.82430 1.90738 1.64093 1.52423 1.31570 1.20941 0.95861 0.95308 0.90261 1.45835 1.46633 1.28094 1.18080 1.20944 0.78124 0.79986 0.89687 1.90617 1.63476 1.40525 1.44676 1.21616 0.94509 0.98373 0.90110 0.87974 1.22422 0.99920 1.01798 1.00047 1.62126 1.19742 0.99208 1.43025 1.22510 0.96295 0.94246 0.99419 1.19793 0.90979 0.97814 0.84653 1.21170 1.15495 1.15577 1.02058 0.91740 1.24982 0.97670 0.96887 0.95147 1.69957 1.37035 1.40485 1.06496 0.86481 0.81443 0.82181 0.77206 1.20661 1.21387 1.19848 0.90093 0.91768 0.91438 0.85666 0.85783 0.85704 0.90941 0.91462 0.91178 0.75203 0.88427 0.88187 0.75234 0.90500 0.92617 0.92081 0.91014 0.90987 0.97323 0.95290 0.98592 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 8.59 36.01 0.31 -0.69 16 2 C -0.07 -0.61 5.60 -104.43 -0.58 -1.19 16 3 C -0.12 -0.93 9.67 -39.61 -0.38 -1.31 16 4 C -0.11 -0.78 10.04 -39.55 -0.40 -1.18 16 5 C -0.12 -0.85 9.70 -39.61 -0.38 -1.24 16 6 C -0.08 -0.66 5.90 -104.44 -0.62 -1.28 16 7 C -0.12 -0.67 9.77 36.00 0.35 -0.32 16 8 C 0.13 1.17 5.53 -83.69 -0.46 0.70 16 9 N -0.68 -4.94 3.63 -9.86 -0.04 -4.97 16 10 C 0.51 4.92 6.74 -10.99 -0.07 4.84 16 11 O -0.51 -6.66 14.09 5.55 0.08 -6.58 16 12 C 0.10 1.01 6.16 -5.19 -0.03 0.97 16 13 N -0.73 -9.17 5.42 -61.47 -0.33 -9.51 16 14 C 0.53 8.65 6.87 -10.98 -0.08 8.57 16 15 O -0.52 -10.02 13.90 5.56 0.08 -9.94 16 16 C 0.07 1.20 2.77 -68.86 -0.19 1.01 16 17 H 0.10 1.78 8.03 -51.93 -0.42 1.36 16 18 C -0.18 -2.93 8.40 37.16 0.31 -2.61 16 19 N -0.52 -11.66 4.53 -237.73 -1.08 -12.74 16 20 C 0.02 0.50 8.57 60.06 0.51 1.01 16 21 C 0.19 5.03 4.16 -4.98 -0.02 5.01 16 22 C -0.50 -14.44 8.46 -34.44 -0.29 -14.73 16 23 H 0.06 1.86 7.12 -52.49 -0.37 1.48 16 24 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 25 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 26 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 30 H 0.08 0.83 7.17 -51.93 -0.37 0.46 16 31 H 0.06 0.51 7.55 -51.93 -0.39 0.12 16 32 H 0.07 0.47 8.04 -51.93 -0.42 0.05 16 33 H 0.13 0.77 8.06 -52.48 -0.42 0.34 16 34 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.43 7.46 -51.93 -0.39 0.04 16 38 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 39 H 0.41 1.79 8.83 -40.82 -0.36 1.43 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.41 4.96 6.85 -40.82 -0.28 4.68 16 43 H 0.08 1.36 6.75 -51.93 -0.35 1.01 16 44 H 0.05 0.73 7.56 -51.93 -0.39 0.33 16 45 H 0.06 0.99 6.38 -51.92 -0.33 0.66 16 46 H 0.07 1.48 5.44 -51.93 -0.28 1.19 16 47 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 48 H 0.01 0.17 6.28 -51.93 -0.33 -0.15 16 49 H 0.03 0.80 8.00 -51.93 -0.42 0.38 16 50 H 0.00 -0.10 6.93 -51.93 -0.36 -0.46 16 51 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 408.25 15.07 6.15 6.15 Total: -1.00 -35.00 408.25 -9.45 -44.45 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.90 Total: 3.18 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.12 Total: -0.98 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.71 Total: -53.28 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.16 Total: -16.52 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.00 -9.45 -44.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.626 kcal (2) G-P(sol) polarization free energy of solvation -35.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds