Wall clock time and date at job start Wed Apr 1 2020 05:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38116 * 120.03767 * 2 1 4 4 C 1.38275 * 120.07311 * 179.72577 * 3 2 1 5 5 C 1.38281 * 120.14125 * 0.27246 * 4 3 2 6 6 C 1.38111 * 120.07227 * 359.96075 * 5 4 3 7 7 C 1.50693 * 120.03895 * 180.02562 * 6 5 4 8 8 C 1.38874 * 119.92795 * 0.02562 * 6 5 4 9 9 N 1.39924 * 120.07372 * 180.02562 * 8 6 5 10 10 C 1.34780 * 119.99801 * 244.28489 * 9 8 6 11 11 O 1.21288 * 120.00239 * 4.82787 * 10 9 8 12 12 C 1.50696 * 119.99632 * 184.82868 * 10 9 8 13 13 N 1.46508 * 109.47015 * 179.97438 * 12 10 9 14 14 C 1.34771 * 119.99791 * 179.97438 * 13 12 10 15 15 O 1.21277 * 120.00799 * 0.02562 * 14 13 12 16 16 C 1.50708 * 119.99756 * 180.02562 * 14 13 12 17 17 H 1.09000 * 109.46799 * 300.00185 * 16 14 13 18 18 C 1.53000 * 109.47078 * 59.99780 * 16 14 13 19 19 N 1.46900 * 109.47162 * 179.97438 * 16 14 13 20 20 C 1.46900 * 111.00032 * 298.95578 * 19 16 14 21 21 C 1.46893 * 110.99843 * 174.99989 * 19 16 14 22 22 C 1.50700 * 109.46983 * 190.00232 * 21 19 16 23 23 H 1.07991 * 120.00357 * 0.02562 * 22 21 19 24 24 C 1.37881 * 119.99739 * 179.97438 * 22 21 19 25 25 N 1.31511 * 120.00161 * 0.02562 * 24 22 21 26 26 Si 1.86809 * 119.99770 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47076 * 89.99913 * 26 24 22 28 28 H 1.48497 * 109.47046 * 210.00079 * 26 24 22 29 29 H 1.48495 * 109.46899 * 330.00241 * 26 24 22 30 30 H 1.09002 * 109.47202 * 96.71569 * 1 2 3 31 31 H 1.08992 * 109.47033 * 216.71144 * 1 2 3 32 32 H 1.09003 * 109.47059 * 336.71916 * 1 2 3 33 33 H 1.08007 * 119.96316 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.93262 * 180.25484 * 4 3 2 35 35 H 1.08002 * 119.96492 * 179.97438 * 5 4 3 36 36 H 1.09006 * 109.46992 * 89.99839 * 7 6 5 37 37 H 1.08998 * 109.47456 * 209.99902 * 7 6 5 38 38 H 1.09003 * 109.47096 * 330.00368 * 7 6 5 39 39 H 0.97002 * 120.00257 * 64.27574 * 9 8 6 40 40 H 1.09000 * 109.47410 * 299.99530 * 12 10 9 41 41 H 1.08999 * 109.47390 * 59.99914 * 12 10 9 42 42 H 0.97000 * 119.99289 * 0.02562 * 13 12 10 43 43 H 1.08996 * 109.47072 * 179.97438 * 18 16 14 44 44 H 1.08997 * 109.47434 * 300.00702 * 18 16 14 45 45 H 1.09012 * 109.46658 * 60.00318 * 18 16 14 46 46 H 1.09004 * 109.47073 * 59.99801 * 20 19 16 47 47 H 1.08995 * 109.46744 * 180.02562 * 20 19 16 48 48 H 1.08999 * 109.46599 * 299.99980 * 20 19 16 49 49 H 1.09005 * 109.47117 * 309.99933 * 21 19 16 50 50 H 1.09000 * 109.47151 * 70.00080 * 21 19 16 51 51 H 0.97007 * 119.99918 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5811 1.1965 0.0057 5 6 4.2762 0.0011 0.0058 6 6 3.5909 -1.1979 0.0009 7 6 4.3491 -2.5002 0.0016 8 6 2.2022 -1.2022 -0.0045 9 7 1.5048 -2.4153 -0.0089 10 6 0.7340 -2.7456 -1.0641 11 8 0.7131 -2.0343 -2.0462 12 6 -0.1020 -3.9988 -1.0234 13 7 -0.8432 -4.1324 -2.2801 14 6 -1.6616 -5.1859 -2.4710 15 8 -1.7851 -6.0233 -1.6024 16 6 -2.4236 -5.3236 -3.7639 17 1 -3.0728 -4.4583 -3.8969 18 6 -1.4374 -5.4055 -4.9308 19 7 -3.2377 -6.5458 -3.7248 20 6 -2.3918 -7.7371 -3.5713 21 6 -4.0851 -6.6523 -4.9199 22 6 -5.0750 -7.7735 -4.7354 23 1 -5.0750 -8.3491 -3.8217 24 6 -5.9816 -8.0638 -5.7329 25 7 -5.9820 -7.3626 -6.8455 26 14 -7.2082 -9.4541 -5.5046 27 1 -8.4453 -8.9245 -4.8764 28 1 -7.5381 -10.0452 -6.8262 29 1 -6.6164 -10.4975 -4.6294 30 1 -0.3634 -0.1202 -1.0206 31 1 -0.3633 -0.8238 0.6143 32 1 -0.3633 0.9440 0.4062 33 1 1.6584 2.1310 0.0004 34 1 4.1194 2.1328 0.0099 35 1 5.3562 0.0051 0.0098 36 1 4.5279 -2.8160 1.0295 37 1 3.7649 -3.2611 -0.5159 38 1 5.3031 -2.3654 -0.5082 39 1 1.5761 -3.0185 0.7473 40 1 0.5470 -4.8643 -0.8902 41 1 -0.8046 -3.9401 -0.1921 42 1 -0.7441 -3.4629 -2.9750 43 1 -1.9885 -5.5055 -5.8659 44 1 -0.8330 -4.4989 -4.9600 45 1 -0.7881 -6.2709 -4.7977 46 1 -1.8263 -7.6639 -2.6423 47 1 -3.0198 -8.6276 -3.5457 48 1 -1.7018 -7.8035 -4.4124 49 1 -4.6213 -5.7152 -5.0698 50 1 -3.4618 -6.8575 -5.7902 51 1 -6.6201 -7.5666 -7.5471 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078645404.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:05 Heat of formation + Delta-G solvation = -58.955829 kcal Electronic energy + Delta-G solvation = -30252.414786 eV Core-core repulsion = 26151.011489 eV Total energy + Delta-G solvation = -4101.403297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.89547 -41.08736 -39.70552 -38.08411 -35.97479 -35.51259 -34.78970 -34.51268 -32.25305 -31.65778 -29.34136 -28.94751 -27.63805 -27.55377 -26.95506 -25.32419 -23.33571 -22.30233 -21.95391 -21.42962 -20.90926 -19.08178 -18.57121 -18.28545 -17.46253 -17.32023 -17.15892 -16.57821 -16.48123 -16.17623 -15.99239 -15.54573 -15.39278 -15.23616 -14.84017 -14.80841 -14.51466 -14.34591 -14.14772 -14.09000 -13.88595 -13.78688 -13.61682 -13.45860 -13.08465 -12.86894 -12.85548 -12.72487 -12.54105 -12.50642 -12.37649 -12.21609 -12.18524 -12.15885 -11.96569 -11.35604 -11.28199 -10.77782 -10.60942 -10.59244 -10.19323 -9.51334 -9.41276 -8.94512 -8.19109 -6.27932 0.26456 0.40456 1.37086 1.41648 1.43081 1.54213 1.59738 1.65317 2.31056 2.43280 2.75356 3.13257 3.35660 3.49631 3.79025 3.82105 3.88822 4.08097 4.08849 4.14364 4.28874 4.33799 4.38025 4.43305 4.52486 4.58122 4.58807 4.62949 4.69224 4.70117 4.78353 4.83482 4.85745 4.91534 5.06819 5.11372 5.12564 5.27854 5.28689 5.31307 5.37542 5.39341 5.48676 5.59317 5.60976 5.66528 6.04544 6.07115 6.26923 6.32659 6.37571 6.65179 6.87133 7.01900 7.20446 7.40946 8.91503 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027305 B = 0.001791 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.214838 B =15628.536228 C =15918.779753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.115 4.115 5 C -0.126 4.126 6 C -0.094 4.094 7 C -0.113 4.113 8 C 0.114 3.886 9 N -0.660 5.660 10 C 0.520 3.480 11 O -0.550 6.550 12 C 0.104 3.896 13 N -0.713 5.713 14 C 0.535 3.465 15 O -0.549 6.549 16 C 0.059 3.941 17 H 0.105 0.895 18 C -0.171 4.171 19 N -0.532 5.532 20 C 0.033 3.967 21 C 0.210 3.790 22 C -0.526 4.526 23 H 0.057 0.943 24 C 0.004 3.996 25 N -0.931 5.931 26 Si 0.968 3.032 27 H -0.274 1.274 28 H -0.280 1.280 29 H -0.268 1.268 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.425 0.575 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.414 0.586 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.083 0.917 47 H 0.050 0.950 48 H 0.016 0.984 49 H 0.007 0.993 50 H -0.023 1.023 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.948 16.976 17.341 34.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.148 4.148 4 C -0.133 4.133 5 C -0.144 4.144 6 C -0.096 4.096 7 C -0.170 4.170 8 C 0.022 3.978 9 N -0.310 5.310 10 C 0.308 3.692 11 O -0.427 6.427 12 C -0.023 4.023 13 N -0.370 5.370 14 C 0.321 3.679 15 O -0.427 6.427 16 C -0.053 4.053 17 H 0.123 0.877 18 C -0.230 4.230 19 N -0.256 5.256 20 C -0.115 4.115 21 C 0.084 3.916 22 C -0.564 4.564 23 H 0.075 0.925 24 C -0.195 4.195 25 N -0.571 5.571 26 Si 0.792 3.208 27 H -0.199 1.199 28 H -0.205 1.205 29 H -0.192 1.192 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.156 0.844 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.265 0.735 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.253 0.747 43 H 0.074 0.926 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.102 0.898 47 H 0.069 0.931 48 H 0.034 0.966 49 H 0.025 0.975 50 H -0.005 1.005 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 23.416 16.890 17.528 33.776 hybrid contribution -0.385 -0.550 -1.047 1.243 sum 23.031 16.340 16.481 32.696 Atomic orbital electron populations 1.20769 0.90917 1.03319 1.01964 1.20191 0.96647 0.92860 0.99320 1.21205 0.94950 0.97391 1.01302 1.21489 0.94049 0.99207 0.98523 1.21235 1.00997 0.91269 1.00938 1.20271 0.92110 0.97382 0.99798 1.20781 0.99839 0.92903 1.03435 1.17357 0.90338 0.85108 1.05037 1.43047 1.46841 1.20013 1.21145 1.20717 0.79424 0.86719 0.82381 1.90731 1.65441 1.53484 1.33070 1.21128 0.96172 0.96066 0.88939 1.45617 1.45432 1.26662 1.19263 1.20423 0.78405 0.80542 0.88515 1.90603 1.64830 1.41931 1.45291 1.21711 0.94979 0.96370 0.92288 0.87720 1.22297 0.99371 1.03440 0.97931 1.61964 1.21307 1.01260 1.41097 1.22402 0.95770 0.93030 1.00267 1.19412 0.90787 0.95932 0.85449 1.21465 1.16528 1.16409 1.01996 0.92453 1.25853 0.99489 0.99391 0.94725 1.70067 1.37880 1.41944 1.07229 0.85408 0.78868 0.79001 0.77478 1.19934 1.20535 1.19213 0.92219 0.91626 0.90221 0.84446 0.83558 0.83639 0.89304 0.92132 0.90471 0.73489 0.86702 0.86913 0.74717 0.92601 0.89280 0.92147 0.89844 0.93080 0.96572 0.97470 1.00517 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.89 8.59 71.24 0.61 -1.28 16 2 C -0.09 -1.54 5.60 -19.74 -0.11 -1.65 16 3 C -0.13 -1.91 9.67 22.25 0.22 -1.69 16 4 C -0.11 -1.40 10.04 22.29 0.22 -1.18 16 5 C -0.13 -1.54 9.70 22.25 0.22 -1.33 16 6 C -0.09 -1.32 5.90 -19.74 -0.12 -1.44 16 7 C -0.11 -1.09 9.77 71.23 0.70 -0.39 16 8 C 0.11 1.86 5.53 38.15 0.21 2.07 16 9 N -0.66 -8.71 3.63 -303.50 -1.10 -9.81 16 10 C 0.52 9.32 6.74 87.66 0.59 9.91 16 11 O -0.55 -13.90 14.09 -3.05 -0.04 -13.94 16 12 C 0.10 1.81 6.16 85.63 0.53 2.34 16 13 N -0.71 -16.94 5.42 -466.78 -2.53 -19.47 16 14 C 0.53 17.07 6.87 87.66 0.60 17.67 16 15 O -0.55 -20.69 13.90 -3.02 -0.04 -20.73 16 16 C 0.06 2.12 2.77 44.17 0.12 2.24 16 17 H 0.10 3.68 8.03 -2.39 -0.02 3.66 16 18 C -0.17 -5.41 8.40 71.98 0.60 -4.81 16 19 N -0.53 -24.41 4.53 -906.04 -4.10 -28.51 16 20 C 0.03 1.43 8.57 127.69 1.09 2.53 16 21 C 0.21 11.33 4.16 85.56 0.36 11.69 16 22 C -0.53 -30.72 8.46 25.60 0.22 -30.51 16 23 H 0.06 3.36 7.12 -2.91 -0.02 3.34 16 24 C 0.00 0.21 5.46 84.66 0.46 0.67 16 25 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 26 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 27 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 28 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 29 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 30 H 0.06 1.25 7.17 -2.39 -0.02 1.24 16 31 H 0.06 1.02 7.55 -2.39 -0.02 1.00 16 32 H 0.08 1.06 8.04 -2.39 -0.02 1.04 16 33 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.15 1.09 8.06 -2.91 -0.02 1.06 16 36 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.06 0.66 7.46 -2.39 -0.02 0.65 16 38 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 39 H 0.43 2.92 8.83 -92.71 -0.82 2.10 16 40 H 0.12 1.70 8.14 -2.39 -0.02 1.69 16 41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.41 9.45 6.85 -92.71 -0.64 8.82 16 43 H 0.05 2.01 6.75 -2.39 -0.02 1.99 16 44 H 0.09 2.19 7.56 -2.39 -0.02 2.17 16 45 H 0.06 1.91 6.38 -2.38 -0.02 1.89 16 46 H 0.08 3.41 5.44 -2.39 -0.01 3.40 16 47 H 0.05 2.37 6.76 -2.39 -0.02 2.36 16 48 H 0.02 0.65 6.28 -2.39 -0.01 0.64 16 49 H 0.01 0.41 8.00 -2.38 -0.02 0.39 16 50 H -0.02 -1.30 6.93 -2.39 -0.02 -1.31 16 51 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -76.12 408.25 0.52 -75.60 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -0.49 Total: 20.55 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 6.52 Total: 4.86 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -7.45 Total: -113.70 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.09 Total: -34.67 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -76.12 0.52 -75.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645404.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.642 kcal (2) G-P(sol) polarization free energy of solvation -76.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds