Wall clock time and date at job start Wed Apr 1 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38110 * 120.03562 * 2 1 4 4 C 1.38286 * 120.07079 * 180.24672 * 3 2 1 5 5 C 1.38279 * 120.13977 * 359.74139 * 4 3 2 6 6 C 1.38111 * 120.07292 * 0.02730 * 5 4 3 7 7 C 1.50694 * 120.03593 * 179.97438 * 6 5 4 8 8 C 1.38869 * 120.03684 * 179.75729 * 2 1 3 9 9 N 1.39928 * 120.07007 * 0.03555 * 8 2 1 10 10 C 1.34777 * 119.99784 * 307.59745 * 9 8 2 11 11 O 1.21294 * 119.99852 * 356.36979 * 10 9 8 12 12 C 1.50702 * 120.00083 * 176.36985 * 10 9 8 13 13 N 1.46499 * 109.47183 * 179.97438 * 12 10 9 14 14 C 1.34771 * 120.00007 * 180.02562 * 13 12 10 15 15 O 1.21279 * 119.99986 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99923 * 180.02562 * 14 13 12 17 17 H 1.08995 * 109.46880 * 60.00046 * 16 14 13 18 18 C 1.52999 * 109.47009 * 299.99923 * 16 14 13 19 19 N 1.46909 * 109.46920 * 180.02562 * 16 14 13 20 20 C 1.46896 * 111.00018 * 66.04659 * 19 16 14 21 21 C 1.46895 * 110.99679 * 189.99981 * 19 16 14 22 22 C 1.50697 * 109.47243 * 170.00016 * 21 19 16 23 23 H 1.08000 * 119.99779 * 359.97438 * 22 21 19 24 24 C 1.37879 * 120.00431 * 180.02562 * 22 21 19 25 25 N 1.31512 * 119.99714 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99840 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47068 * 90.00014 * 26 24 22 28 28 H 1.48502 * 109.47003 * 210.00608 * 26 24 22 29 29 H 1.48503 * 109.46944 * 330.00145 * 26 24 22 30 30 H 1.08993 * 109.47646 * 278.12780 * 1 2 3 31 31 H 1.09004 * 109.47015 * 38.13258 * 1 2 3 32 32 H 1.09001 * 109.46797 * 158.12571 * 1 2 3 33 33 H 1.08001 * 119.96567 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.92909 * 179.76901 * 4 3 2 35 35 H 1.08005 * 119.96512 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47429 * 270.01420 * 7 6 5 37 37 H 1.08995 * 109.47507 * 30.02337 * 7 6 5 38 38 H 1.09005 * 109.47171 * 150.02034 * 7 6 5 39 39 H 0.97002 * 120.00174 * 127.59896 * 9 8 2 40 40 H 1.08998 * 109.46610 * 60.00380 * 12 10 9 41 41 H 1.08996 * 109.47118 * 300.00239 * 12 10 9 42 42 H 0.97003 * 120.00056 * 0.02562 * 13 12 10 43 43 H 1.08997 * 109.46953 * 179.97438 * 18 16 14 44 44 H 1.09002 * 109.47022 * 299.99946 * 18 16 14 45 45 H 1.08996 * 109.47022 * 59.99956 * 18 16 14 46 46 H 1.08995 * 109.46825 * 183.95375 * 20 19 16 47 47 H 1.09002 * 109.46769 * 303.95326 * 20 19 16 48 48 H 1.08997 * 109.47594 * 63.95220 * 20 19 16 49 49 H 1.09001 * 109.47360 * 49.99941 * 21 19 16 50 50 H 1.09004 * 109.47265 * 290.00161 * 21 19 16 51 51 H 0.97006 * 119.99634 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5811 1.1965 -0.0052 5 6 4.2762 0.0011 -0.0049 6 6 3.5908 -1.1980 -0.0001 7 6 4.3491 -2.5002 -0.0004 8 6 2.2021 -1.2022 0.0051 9 7 1.5047 -2.4153 0.0095 10 6 0.5510 -2.6409 0.9347 11 8 0.3426 -1.8205 1.8033 12 6 -0.2564 -3.9126 0.8899 13 7 -1.2190 -3.9191 1.9943 14 6 -2.0535 -4.9651 2.1547 15 8 -2.0073 -5.9013 1.3851 16 6 -3.0441 -4.9714 3.2905 17 1 -3.7110 -4.1146 3.1956 18 6 -2.2943 -4.8892 4.6216 19 7 -3.8302 -6.2117 3.2476 20 6 -2.9832 -7.3815 3.5161 21 6 -4.9587 -6.1524 4.1862 22 6 -5.8763 -7.3228 3.9432 23 1 -5.6446 -8.0389 3.1686 24 6 -7.0123 -7.4789 4.7089 25 7 -7.8127 -8.5007 4.4970 26 14 -7.4135 -6.2399 6.0480 27 1 -8.2465 -5.1497 5.4801 28 1 -8.1595 -6.9155 7.1400 29 1 -6.1533 -5.6698 6.5885 30 1 -0.3634 0.1453 1.0172 31 1 -0.3633 0.8084 -0.6346 32 1 -0.3633 -0.9537 -0.3829 33 1 1.6583 2.1310 -0.0004 34 1 4.1194 2.1328 -0.0089 35 1 5.3562 0.0050 -0.0094 36 1 4.5284 -2.8161 -1.0282 37 1 5.3027 -2.3656 0.5099 38 1 3.7646 -3.2612 0.5167 39 1 1.7077 -3.0938 -0.6533 40 1 0.4103 -4.7697 0.9846 41 1 -0.7905 -3.9707 -0.0584 42 1 -1.2557 -3.1705 2.6101 43 1 -3.0107 -4.8934 5.4430 44 1 -1.6273 -5.7461 4.7164 45 1 -1.7107 -3.9693 4.6536 46 1 -3.5748 -8.2906 3.4093 47 1 -2.1555 -7.4011 2.8071 48 1 -2.5907 -7.3206 4.5312 49 1 -5.5078 -5.2229 4.0358 50 1 -4.5833 -6.1912 5.2088 51 1 -8.6117 -8.6107 5.0360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078645407.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:10 Heat of formation + Delta-G solvation = -29.124516 kcal Electronic energy + Delta-G solvation = -30346.691920 eV Core-core repulsion = 26246.582206 eV Total energy + Delta-G solvation = -4100.109714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.30808 -39.91387 -38.93439 -36.65781 -35.31716 -34.47258 -33.91207 -32.64015 -31.42810 -30.56031 -28.47665 -27.60610 -27.04747 -26.94336 -25.45479 -23.56256 -22.45558 -21.49613 -20.70324 -20.63672 -19.55093 -18.27840 -17.55492 -16.93687 -16.64536 -16.36342 -16.13249 -15.55134 -15.52768 -14.93557 -14.59678 -14.33503 -14.24980 -14.20311 -13.93595 -13.83128 -13.53640 -13.38647 -13.35909 -13.12977 -13.08056 -12.85885 -12.47706 -12.27437 -11.99233 -11.96811 -11.71555 -11.67353 -11.56678 -11.23822 -11.06712 -10.93565 -10.58388 -10.50976 -10.44042 -10.28784 -9.92077 -9.40482 -9.22955 -9.12654 -8.95138 -8.68489 -8.54362 -7.31365 -6.01988 -3.99100 0.83901 0.96758 2.08360 2.40541 2.85539 3.24821 3.29605 3.31330 3.37042 3.37478 4.14041 4.34742 4.40161 4.43518 4.58168 4.80206 4.84374 4.89643 4.93957 5.01174 5.03242 5.10130 5.13136 5.14595 5.29154 5.33956 5.34430 5.40501 5.41955 5.44232 5.65287 5.80984 5.88462 5.93319 5.95554 5.99446 6.12803 6.17435 6.18936 6.24208 6.32126 6.41120 6.61114 6.78685 6.84938 6.91771 7.04788 7.46292 7.60599 7.63664 7.91571 8.03837 8.41250 8.68505 9.08674 9.59020 11.11160 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024310 B = 0.001898 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.514712 B =14749.755364 C =15300.785342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.069 4.069 3 C -0.115 4.115 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.093 4.093 7 C -0.116 4.116 8 C 0.136 3.864 9 N -0.673 5.673 10 C 0.509 3.491 11 O -0.512 6.512 12 C 0.104 3.896 13 N -0.728 5.728 14 C 0.526 3.474 15 O -0.515 6.515 16 C 0.063 3.937 17 H 0.103 0.897 18 C -0.183 4.183 19 N -0.507 5.507 20 C 0.031 3.969 21 C 0.162 3.838 22 C -0.507 4.507 23 H 0.082 0.918 24 C 0.067 3.933 25 N -0.900 5.900 26 Si 0.874 3.126 27 H -0.276 1.276 28 H -0.286 1.286 29 H -0.268 1.268 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.412 0.588 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.409 0.591 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.012 0.988 49 H 0.023 0.977 50 H -0.007 1.007 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.690 19.166 -10.175 34.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.071 4.071 3 C -0.133 4.133 4 C -0.136 4.136 5 C -0.135 4.135 6 C -0.095 4.095 7 C -0.173 4.173 8 C 0.043 3.957 9 N -0.321 5.321 10 C 0.297 3.703 11 O -0.386 6.386 12 C -0.023 4.023 13 N -0.387 5.387 14 C 0.312 3.688 15 O -0.388 6.388 16 C -0.050 4.050 17 H 0.121 0.879 18 C -0.243 4.243 19 N -0.230 5.230 20 C -0.117 4.117 21 C 0.036 3.964 22 C -0.545 4.545 23 H 0.100 0.900 24 C -0.134 4.134 25 N -0.539 5.539 26 Si 0.702 3.298 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.193 1.193 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.249 0.751 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.247 0.753 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.030 0.970 49 H 0.041 0.959 50 H 0.010 0.990 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 26.128 18.858 -10.511 33.893 hybrid contribution 0.128 0.831 1.489 1.711 sum 26.256 19.689 -9.022 34.036 Atomic orbital electron populations 1.20876 0.90666 1.01981 1.03132 1.19883 0.96492 0.91884 0.98811 1.20911 0.94194 0.97201 1.01036 1.21138 0.94200 0.98093 1.00131 1.20869 0.99756 0.91436 1.01427 1.19853 0.91944 0.96236 1.01454 1.20759 1.00036 0.94026 1.02433 1.17226 0.89828 0.85059 1.03570 1.43308 1.37970 1.17387 1.33447 1.20790 0.79966 0.88550 0.80997 1.90738 1.66475 1.46542 1.34882 1.20939 0.92707 0.95071 0.93614 1.45807 1.37499 1.23908 1.31477 1.20835 0.80436 0.81209 0.86328 1.90668 1.68828 1.34586 1.44721 1.21650 0.94217 0.97710 0.91394 0.87934 1.22439 1.01390 1.02109 0.98332 1.61901 1.08575 0.99156 1.53403 1.22399 0.97154 0.94766 0.97428 1.20245 0.88749 0.98311 0.89081 1.21026 1.05648 1.08823 1.19026 0.89978 1.24898 0.96010 0.95407 0.97077 1.69896 1.13894 1.29480 1.40622 0.86877 0.78790 0.81920 0.82245 1.20150 1.21231 1.19287 0.89610 0.91849 0.92403 0.85685 0.85826 0.85709 0.90929 0.91100 0.91497 0.75124 0.88339 0.88135 0.75293 0.91008 0.91711 0.92351 0.90361 0.91698 0.96982 0.95872 0.98975 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 8.22 36.00 0.30 -0.69 16 2 C -0.07 -0.63 5.48 -104.44 -0.57 -1.20 16 3 C -0.11 -0.91 9.73 -39.61 -0.39 -1.29 16 4 C -0.12 -0.81 10.04 -39.55 -0.40 -1.21 16 5 C -0.12 -0.80 9.70 -39.61 -0.38 -1.18 16 6 C -0.09 -0.69 5.90 -104.44 -0.62 -1.31 16 7 C -0.12 -0.60 9.67 36.00 0.35 -0.25 16 8 C 0.14 1.17 5.84 -83.69 -0.49 0.68 16 9 N -0.67 -4.77 3.91 -9.86 -0.04 -4.81 16 10 C 0.51 4.65 6.05 -10.98 -0.07 4.59 16 11 O -0.51 -6.18 12.74 5.55 0.07 -6.11 16 12 C 0.10 0.96 6.16 -5.19 -0.03 0.93 16 13 N -0.73 -8.68 5.42 -61.47 -0.33 -9.02 16 14 C 0.53 8.31 6.85 -10.98 -0.08 8.24 16 15 O -0.51 -9.82 14.33 5.56 0.08 -9.74 16 16 C 0.06 1.07 2.73 -68.86 -0.19 0.88 16 17 H 0.10 1.63 7.93 -51.93 -0.41 1.22 16 18 C -0.18 -2.67 8.34 37.16 0.31 -2.36 16 19 N -0.51 -11.02 4.44 -237.73 -1.06 -12.07 16 20 C 0.03 0.63 8.31 60.06 0.50 1.13 16 21 C 0.16 3.94 3.36 -4.98 -0.02 3.92 16 22 C -0.51 -14.62 9.07 -34.44 -0.31 -14.94 16 23 H 0.08 2.61 7.35 -52.49 -0.39 2.22 16 24 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 25 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 26 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 30 H 0.09 0.89 7.09 -51.93 -0.37 0.52 16 31 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 32 H 0.06 0.53 6.16 -51.93 -0.32 0.21 16 33 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 38 H 0.07 0.36 7.45 -51.93 -0.39 -0.03 16 39 H 0.41 1.74 8.68 -40.82 -0.35 1.38 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.41 4.58 6.85 -40.82 -0.28 4.30 16 43 H 0.07 1.12 6.91 -51.93 -0.36 0.76 16 44 H 0.06 0.96 6.41 -51.93 -0.33 0.62 16 45 H 0.06 0.68 7.56 -51.93 -0.39 0.29 16 46 H 0.08 1.79 6.86 -51.93 -0.36 1.44 16 47 H 0.06 1.29 5.83 -51.93 -0.30 0.98 16 48 H 0.01 0.23 6.46 -51.93 -0.34 -0.11 16 49 H 0.02 0.56 7.36 -51.93 -0.38 0.17 16 50 H -0.01 -0.18 6.12 -51.93 -0.32 -0.49 16 51 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -35.63 402.07 -9.12 -44.75 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.83 Total: 3.36 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.18 Total: -2.19 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.65 Total: -52.94 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.15 Total: -15.84 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.63 -9.12 -44.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645407.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.629 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds