Wall clock time and date at job start Wed Apr 1 2020 04:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38287 * 119.93321 * 2 1 4 4 C 1.38111 * 120.07387 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.03343 * 180.02562 * 4 3 2 6 6 C 1.38863 * 119.92698 * 0.02562 * 4 3 2 7 7 N 1.39933 * 120.06850 * 180.02562 * 6 4 3 8 8 C 1.34768 * 120.00230 * 128.08761 * 7 6 4 9 9 O 1.21291 * 119.99785 * 356.12708 * 8 7 6 10 10 C 1.50701 * 120.00437 * 176.13168 * 8 7 6 11 11 N 1.46493 * 109.47185 * 180.02562 * 10 8 7 12 12 C 1.34776 * 119.99963 * 179.97438 * 11 10 8 13 13 O 1.21284 * 120.00045 * 359.97438 * 12 11 10 14 14 C 1.50704 * 120.00425 * 179.97438 * 12 11 10 15 15 N 1.46898 * 109.47416 * 180.02562 * 14 12 11 16 16 C 1.46892 * 111.00142 * 66.04346 * 15 14 12 17 17 C 1.46904 * 110.99872 * 190.00510 * 15 14 12 18 18 C 1.50699 * 109.46940 * 169.99701 * 17 15 14 19 19 H 1.08003 * 120.00236 * 359.97438 * 18 17 15 20 20 C 1.37881 * 119.99778 * 179.97438 * 18 17 15 21 21 N 1.31512 * 120.00018 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99651 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47132 * 60.00723 * 22 20 18 24 24 H 1.48504 * 109.46765 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47355 * 300.00252 * 22 20 18 26 26 C 1.38870 * 119.86290 * 0.27774 * 6 4 3 27 27 C 1.50701 * 120.03770 * 179.70449 * 26 6 4 28 28 C 1.38112 * 119.92575 * 359.42653 * 26 6 4 29 29 H 1.08998 * 109.47294 * 90.00241 * 1 2 3 30 30 H 1.09002 * 109.46852 * 210.00195 * 1 2 3 31 31 H 1.09000 * 109.46970 * 330.00028 * 1 2 3 32 32 H 1.08007 * 119.96075 * 359.97178 * 3 2 1 33 33 H 1.08997 * 109.47177 * 269.97668 * 5 4 3 34 34 H 1.08997 * 109.46778 * 29.98030 * 5 4 3 35 35 H 1.08999 * 109.46549 * 149.97743 * 5 4 3 36 36 H 0.97006 * 119.99601 * 307.80929 * 7 6 4 37 37 H 1.09001 * 109.46717 * 299.99639 * 10 8 7 38 38 H 1.08993 * 109.46954 * 59.99631 * 10 8 7 39 39 H 0.96998 * 120.00796 * 359.97438 * 11 10 8 40 40 H 1.09001 * 109.47030 * 300.00589 * 14 12 11 41 41 H 1.09001 * 109.46971 * 59.99946 * 14 12 11 42 42 H 1.08998 * 109.46858 * 60.00551 * 16 15 14 43 43 H 1.08998 * 109.47136 * 180.02562 * 16 15 14 44 44 H 1.08996 * 109.47798 * 300.00108 * 16 15 14 45 45 H 1.09001 * 109.46282 * 289.99223 * 17 15 14 46 46 H 1.08998 * 109.47384 * 49.99227 * 17 15 14 47 47 H 0.96998 * 119.99766 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.47342 * 97.89585 * 27 26 6 49 49 H 1.08998 * 109.47226 * 217.90285 * 27 26 6 50 50 H 1.09007 * 109.47224 * 337.90077 * 27 26 6 51 51 H 1.08002 * 119.95983 * 180.29888 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.3292 2.5083 0.0011 6 6 4.2738 0.0000 0.0005 7 7 5.6732 0.0000 0.0016 8 6 6.3463 -0.7204 0.9204 9 8 5.7413 -1.3121 1.7892 10 6 7.8508 -0.7906 0.8684 11 7 8.3387 -1.6292 1.9660 12 6 9.6616 -1.8368 2.1187 13 8 10.4481 -1.3298 1.3472 14 6 10.1637 -2.6990 3.2482 15 7 11.6302 -2.7676 3.1974 16 6 12.2283 -1.4536 3.4683 17 6 12.1424 -3.7814 4.1290 18 6 13.6123 -3.9979 3.8773 19 1 14.1157 -3.4386 3.1025 20 6 14.3147 -4.9100 4.6362 21 7 13.7017 -5.5914 5.5792 22 14 16.1366 -5.1788 4.3236 23 1 16.8677 -3.9027 4.5292 24 1 16.6544 -6.2036 5.2654 25 1 16.3361 -5.6442 2.9277 26 6 3.5780 -1.2018 -0.0058 27 6 4.3291 -2.5083 -0.0126 28 6 2.1969 -1.1984 -0.0002 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6552 2.1328 -0.0005 33 1 4.5110 2.8234 -1.0264 34 1 3.7383 3.2668 0.5146 35 1 5.2814 2.3797 0.5157 36 1 6.1587 0.5153 -0.6615 37 1 8.1617 -1.2215 -0.0833 38 1 8.2649 0.2129 0.9656 39 1 7.7098 -2.0351 2.5830 40 1 9.8531 -2.2681 4.2000 41 1 9.7491 -3.7025 3.1513 42 1 11.9284 -1.1154 4.4602 43 1 13.3145 -1.5327 3.4241 44 1 11.8859 -0.7374 2.7214 45 1 11.9956 -3.4403 5.1538 46 1 11.6060 -4.7181 3.9775 47 1 14.1957 -6.2334 6.1128 48 1 4.3877 -2.8990 1.0033 49 1 3.8073 -3.2241 -0.6477 50 1 5.3358 -2.3467 -0.3983 51 1 1.6553 -2.1327 -0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078645630.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:23 Heat of formation + Delta-G solvation = -41.291188 kcal Electronic energy + Delta-G solvation = -29689.871410 eV Core-core repulsion = 25589.234110 eV Total energy + Delta-G solvation = -4100.637300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.28520 -39.71217 -38.89882 -36.04737 -35.60576 -34.35179 -33.87897 -32.63714 -32.46782 -29.48018 -28.35584 -27.65462 -27.08686 -26.83156 -25.84206 -23.92806 -21.89696 -21.24875 -20.76566 -20.48372 -20.02932 -18.31833 -17.58143 -16.80957 -16.45860 -16.08687 -15.91554 -15.70140 -14.95255 -14.87604 -14.61429 -14.51403 -14.32812 -14.03537 -13.84150 -13.67001 -13.61054 -13.44308 -13.34475 -13.33685 -13.03657 -12.92986 -12.59498 -12.36060 -12.10880 -11.79999 -11.70744 -11.51903 -11.46797 -11.37668 -11.00721 -10.82056 -10.69239 -10.50609 -10.47685 -10.20541 -9.95841 -9.50209 -9.15012 -9.06208 -8.91471 -8.50017 -8.40515 -7.21456 -6.00128 -4.00799 0.85274 1.00883 2.12909 2.45814 2.92263 3.29790 3.32182 3.37437 3.40526 3.44973 4.18874 4.35490 4.38738 4.46098 4.46414 4.85762 4.90129 4.98715 5.00725 5.04636 5.06390 5.09820 5.14073 5.20593 5.21904 5.29240 5.32351 5.36076 5.45618 5.47247 5.53907 5.71094 5.77966 5.85922 5.93895 5.95727 6.07294 6.18659 6.24439 6.27531 6.37780 6.44692 6.65626 6.89101 6.93675 7.25474 7.33142 7.55572 7.68395 7.83194 8.07765 8.20794 8.45653 8.57062 9.06789 9.63046 11.10871 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028220 B = 0.001636 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.960282 B =17106.858312 C =17671.857183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.117 4.117 4 C -0.089 4.089 5 C -0.115 4.115 6 C 0.130 3.870 7 N -0.673 5.673 8 C 0.509 3.491 9 O -0.512 6.512 10 C 0.105 3.895 11 N -0.730 5.730 12 C 0.519 3.481 13 O -0.519 6.519 14 C 0.039 3.961 15 N -0.523 5.523 16 C 0.033 3.967 17 C 0.192 3.808 18 C -0.506 4.506 19 H 0.065 0.935 20 C 0.055 3.945 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.276 1.276 26 C -0.064 4.064 27 C -0.110 4.110 28 C -0.115 4.115 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.411 0.589 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.410 0.590 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.005 0.995 43 H 0.074 0.926 44 H 0.063 0.937 45 H -0.007 1.007 46 H 0.031 0.969 47 H 0.261 0.739 48 H 0.086 0.914 49 H 0.062 0.938 50 H 0.057 0.943 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.799 14.898 -13.484 34.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.085 4.085 3 C -0.135 4.135 4 C -0.090 4.090 5 C -0.172 4.172 6 C 0.038 3.962 7 N -0.321 5.321 8 C 0.296 3.704 9 O -0.386 6.386 10 C -0.023 4.023 11 N -0.389 5.389 12 C 0.306 3.694 13 O -0.393 6.393 14 C -0.093 4.093 15 N -0.248 5.248 16 C -0.115 4.115 17 C 0.068 3.932 18 C -0.545 4.545 19 H 0.083 0.917 20 C -0.146 4.146 21 N -0.540 5.540 22 Si 0.728 3.272 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.201 1.201 26 C -0.066 4.066 27 C -0.166 4.166 28 C -0.134 4.134 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.248 0.752 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.247 0.753 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.023 0.977 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.011 0.989 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.104 0.896 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -27.397 14.526 -13.729 33.913 hybrid contribution 0.577 0.087 0.694 0.906 sum -26.820 14.613 -13.036 33.208 Atomic orbital electron populations 1.20783 0.91038 1.02881 1.02319 1.19898 0.96147 0.92940 0.99472 1.20726 0.92693 0.97731 1.02383 1.19814 0.93933 0.94102 1.01194 1.20754 1.00249 0.93797 1.02399 1.17197 0.82166 0.92681 1.04190 1.43295 1.04739 1.50324 1.33708 1.20792 0.90162 0.78387 0.81023 1.90739 1.69718 1.43429 1.34704 1.20921 0.89253 0.98343 0.93747 1.45825 1.08323 1.52854 1.31896 1.21050 0.80725 0.80929 0.86651 1.90651 1.54849 1.49169 1.44623 1.21925 0.93426 0.99585 0.94374 1.61856 1.00385 1.07671 1.54882 1.22362 1.01429 0.90569 0.97188 1.19796 0.95925 0.89131 0.88373 1.21120 0.93454 1.22182 1.17699 0.91728 1.24984 0.98716 0.95814 0.95127 1.69947 1.36399 1.25984 1.21652 0.86523 0.84827 0.77795 0.78045 1.20271 1.21403 1.20141 1.19851 0.93752 0.94479 0.98513 1.20878 0.99111 0.93487 1.03159 1.20769 0.92821 0.97816 1.01960 0.91137 0.91459 0.91524 0.85765 0.90956 0.91133 0.91472 0.75194 0.88239 0.88429 0.75272 0.92864 0.88263 0.97680 0.90721 0.91795 0.98932 0.95101 0.92896 0.89560 0.91878 0.92395 0.85731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.01 36.00 0.36 -0.22 16 2 C -0.08 -0.64 5.88 -104.59 -0.62 -1.25 16 3 C -0.12 -0.87 9.35 -39.61 -0.37 -1.24 16 4 C -0.09 -0.70 5.90 -104.44 -0.62 -1.31 16 5 C -0.12 -0.64 9.67 36.01 0.35 -0.29 16 6 C 0.13 1.18 5.84 -83.69 -0.49 0.69 16 7 N -0.67 -5.04 3.91 -9.86 -0.04 -5.08 16 8 C 0.51 4.88 6.04 -10.99 -0.07 4.82 16 9 O -0.51 -6.45 12.73 5.55 0.07 -6.38 16 10 C 0.11 1.02 6.16 -5.20 -0.03 0.99 16 11 N -0.73 -9.11 5.53 -61.48 -0.34 -9.45 16 12 C 0.52 8.52 7.55 -10.98 -0.08 8.44 16 13 O -0.52 -10.11 14.31 5.55 0.08 -10.03 16 14 C 0.04 0.70 5.45 -4.98 -0.03 0.67 16 15 N -0.52 -11.90 4.49 -245.83 -1.10 -13.01 16 16 C 0.03 0.70 9.03 60.06 0.54 1.24 16 17 C 0.19 5.09 4.72 -4.97 -0.02 5.07 16 18 C -0.51 -14.54 8.46 -34.44 -0.29 -14.84 16 19 H 0.06 1.86 7.12 -52.48 -0.37 1.48 16 20 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 22 Si 0.90 22.01 29.54 -169.99 -5.02 16.98 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C -0.06 -0.62 5.48 -104.43 -0.57 -1.19 16 27 C -0.11 -1.03 8.22 36.01 0.30 -0.74 16 28 C -0.12 -0.98 9.38 -39.61 -0.37 -1.35 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.12 0.68 8.06 -52.48 -0.42 0.25 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.34 8.09 -51.93 -0.42 -0.07 16 35 H 0.07 0.39 7.45 -51.93 -0.39 0.00 16 36 H 0.41 1.88 8.68 -40.82 -0.35 1.53 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.41 4.81 7.44 -40.82 -0.30 4.50 16 40 H 0.05 0.89 8.12 -51.93 -0.42 0.46 16 41 H 0.10 1.67 7.93 -51.93 -0.41 1.26 16 42 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 43 H 0.07 1.69 6.76 -51.93 -0.35 1.34 16 44 H 0.06 1.30 5.88 -51.93 -0.31 0.99 16 45 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 46 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.09 0.94 7.09 -51.93 -0.37 0.57 16 49 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 50 H 0.06 0.55 6.16 -51.93 -0.32 0.23 16 51 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 413.91 15.07 6.24 6.24 Total: -1.00 -35.24 413.91 -9.69 -44.94 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.21 Total: 0.97 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.11 Total: 0.97 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.75 Total: -53.68 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.15 Total: -16.41 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.24 -9.69 -44.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645630.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.645 kcal (2) G-P(sol) polarization free energy of solvation -35.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds