Wall clock time and date at job start Wed Apr 1 2020 04:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38287 * 119.93321 * 2 1 4 4 C 1.38111 * 120.07387 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.03343 * 180.02562 * 4 3 2 6 6 C 1.38863 * 119.92698 * 0.02562 * 4 3 2 7 7 N 1.39933 * 120.06850 * 180.02562 * 6 4 3 8 8 C 1.34768 * 120.00230 * 128.08761 * 7 6 4 9 9 O 1.21291 * 119.99785 * 356.12708 * 8 7 6 10 10 C 1.50701 * 120.00437 * 176.13168 * 8 7 6 11 11 N 1.46493 * 109.47185 * 180.02562 * 10 8 7 12 12 C 1.34776 * 119.99963 * 179.97438 * 11 10 8 13 13 O 1.21284 * 120.00045 * 359.97438 * 12 11 10 14 14 C 1.50704 * 120.00425 * 179.97438 * 12 11 10 15 15 N 1.46898 * 109.47416 * 180.02562 * 14 12 11 16 16 C 1.46892 * 111.00142 * 66.04346 * 15 14 12 17 17 C 1.46904 * 110.99872 * 190.00510 * 15 14 12 18 18 C 1.50699 * 109.46940 * 169.99701 * 17 15 14 19 19 H 1.08003 * 120.00236 * 359.97438 * 18 17 15 20 20 C 1.37881 * 119.99778 * 179.97438 * 18 17 15 21 21 N 1.31512 * 120.00018 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99651 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47132 * 60.00723 * 22 20 18 24 24 H 1.48504 * 109.46765 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47355 * 300.00252 * 22 20 18 26 26 C 1.38870 * 119.86290 * 0.27774 * 6 4 3 27 27 C 1.50701 * 120.03770 * 179.70449 * 26 6 4 28 28 C 1.38112 * 119.92575 * 359.42653 * 26 6 4 29 29 H 1.08998 * 109.47294 * 90.00241 * 1 2 3 30 30 H 1.09002 * 109.46852 * 210.00195 * 1 2 3 31 31 H 1.09000 * 109.46970 * 330.00028 * 1 2 3 32 32 H 1.08007 * 119.96075 * 359.97178 * 3 2 1 33 33 H 1.08997 * 109.47177 * 269.97668 * 5 4 3 34 34 H 1.08997 * 109.46778 * 29.98030 * 5 4 3 35 35 H 1.08999 * 109.46549 * 149.97743 * 5 4 3 36 36 H 0.97006 * 119.99601 * 307.80929 * 7 6 4 37 37 H 1.09001 * 109.46717 * 299.99639 * 10 8 7 38 38 H 1.08993 * 109.46954 * 59.99631 * 10 8 7 39 39 H 0.96998 * 120.00796 * 359.97438 * 11 10 8 40 40 H 1.09001 * 109.47030 * 300.00589 * 14 12 11 41 41 H 1.09001 * 109.46971 * 59.99946 * 14 12 11 42 42 H 1.08998 * 109.46858 * 60.00551 * 16 15 14 43 43 H 1.08998 * 109.47136 * 180.02562 * 16 15 14 44 44 H 1.08996 * 109.47798 * 300.00108 * 16 15 14 45 45 H 1.09001 * 109.46282 * 289.99223 * 17 15 14 46 46 H 1.08998 * 109.47384 * 49.99227 * 17 15 14 47 47 H 0.96998 * 119.99766 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.47342 * 97.89585 * 27 26 6 49 49 H 1.08998 * 109.47226 * 217.90285 * 27 26 6 50 50 H 1.09007 * 109.47224 * 337.90077 * 27 26 6 51 51 H 1.08002 * 119.95983 * 180.29888 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 0.0005 5 6 4.3292 2.5083 0.0011 6 6 4.2738 0.0000 0.0005 7 7 5.6732 0.0000 0.0016 8 6 6.3463 -0.7204 0.9204 9 8 5.7413 -1.3121 1.7892 10 6 7.8508 -0.7906 0.8684 11 7 8.3387 -1.6292 1.9660 12 6 9.6616 -1.8368 2.1187 13 8 10.4481 -1.3298 1.3472 14 6 10.1637 -2.6990 3.2482 15 7 11.6302 -2.7676 3.1974 16 6 12.2283 -1.4536 3.4683 17 6 12.1424 -3.7814 4.1290 18 6 13.6123 -3.9979 3.8773 19 1 14.1157 -3.4386 3.1025 20 6 14.3147 -4.9100 4.6362 21 7 13.7017 -5.5914 5.5792 22 14 16.1366 -5.1788 4.3236 23 1 16.8677 -3.9027 4.5292 24 1 16.6544 -6.2036 5.2654 25 1 16.3361 -5.6442 2.9277 26 6 3.5780 -1.2018 -0.0058 27 6 4.3291 -2.5083 -0.0126 28 6 2.1969 -1.1984 -0.0002 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6552 2.1328 -0.0005 33 1 4.5110 2.8234 -1.0264 34 1 3.7383 3.2668 0.5146 35 1 5.2814 2.3797 0.5157 36 1 6.1587 0.5153 -0.6615 37 1 8.1617 -1.2215 -0.0833 38 1 8.2649 0.2129 0.9656 39 1 7.7098 -2.0351 2.5830 40 1 9.8531 -2.2681 4.2000 41 1 9.7491 -3.7025 3.1513 42 1 11.9284 -1.1154 4.4602 43 1 13.3145 -1.5327 3.4241 44 1 11.8859 -0.7374 2.7214 45 1 11.9956 -3.4403 5.1538 46 1 11.6060 -4.7181 3.9775 47 1 14.1957 -6.2334 6.1128 48 1 4.3877 -2.8990 1.0033 49 1 3.8073 -3.2241 -0.6477 50 1 5.3358 -2.3467 -0.3983 51 1 1.6553 -2.1327 -0.0003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078645630.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:22 Heat of formation + Delta-G solvation = -65.358640 kcal Electronic energy + Delta-G solvation = -29690.915053 eV Core-core repulsion = 25589.234110 eV Total energy + Delta-G solvation = -4101.680943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.00369 -40.84918 -39.77243 -37.74041 -36.32621 -35.47304 -34.61682 -34.49183 -33.23703 -30.75279 -29.28011 -28.87769 -28.31373 -27.65768 -26.72459 -25.72699 -22.87309 -22.31688 -21.76420 -21.44991 -21.07510 -19.19810 -18.60203 -18.27939 -17.55045 -17.34713 -17.03948 -16.76393 -16.54630 -16.01817 -15.60418 -15.54810 -15.33079 -15.17908 -15.05875 -14.76529 -14.43290 -14.15213 -14.11889 -14.00538 -13.94816 -13.83612 -13.61697 -13.51189 -13.28369 -13.18172 -12.78617 -12.64747 -12.62967 -12.57378 -12.34457 -12.26665 -12.08059 -12.03705 -11.95774 -11.45468 -11.25560 -10.90093 -10.76581 -10.59748 -10.21385 -9.51551 -9.11099 -9.02239 -8.19664 -6.29007 0.23822 0.40124 1.38110 1.42384 1.45756 1.53519 1.60951 1.63774 2.30159 2.43746 2.70990 3.12898 3.38403 3.48230 3.81238 3.82063 3.89087 3.93689 4.23748 4.32337 4.32923 4.35367 4.40325 4.42587 4.47524 4.50440 4.59436 4.67782 4.70765 4.70908 4.75563 4.79671 4.86535 4.97598 5.08959 5.10097 5.16864 5.17648 5.25942 5.29171 5.32494 5.40717 5.48727 5.56786 5.64808 5.67417 6.01976 6.07003 6.27316 6.28489 6.37250 6.62385 6.85352 6.99791 7.21625 7.40095 8.91022 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.028220 B = 0.001636 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.960282 B =17106.858312 C =17671.857183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C -0.124 4.124 4 C -0.093 4.093 5 C -0.114 4.114 6 C 0.110 3.890 7 N -0.656 5.656 8 C 0.515 3.485 9 O -0.545 6.545 10 C 0.105 3.895 11 N -0.716 5.716 12 C 0.529 3.471 13 O -0.552 6.552 14 C 0.033 3.967 15 N -0.538 5.538 16 C 0.041 3.959 17 C 0.207 3.793 18 C -0.527 4.527 19 H 0.059 0.941 20 C 0.004 3.996 21 N -0.931 5.931 22 Si 0.969 3.031 23 H -0.269 1.269 24 H -0.281 1.281 25 H -0.270 1.270 26 C -0.085 4.085 27 C -0.104 4.104 28 C -0.130 4.130 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.145 0.855 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.426 0.574 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.415 0.585 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.012 0.988 43 H 0.055 0.945 44 H 0.077 0.923 45 H -0.029 1.029 46 H 0.013 0.987 47 H 0.265 0.735 48 H 0.067 0.933 49 H 0.073 0.927 50 H 0.053 0.947 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.571 16.399 -14.604 36.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.095 4.095 5 C -0.170 4.170 6 C 0.018 3.982 7 N -0.305 5.305 8 C 0.303 3.697 9 O -0.422 6.422 10 C -0.021 4.021 11 N -0.372 5.372 12 C 0.315 3.685 13 O -0.429 6.429 14 C -0.098 4.098 15 N -0.263 5.263 16 C -0.107 4.107 17 C 0.081 3.919 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.194 4.194 21 N -0.572 5.572 22 Si 0.794 3.206 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.196 1.196 26 C -0.087 4.087 27 C -0.160 4.160 28 C -0.148 4.148 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.163 0.837 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.265 0.735 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.253 0.747 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.095 0.905 45 H -0.011 1.011 46 H 0.031 0.969 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.072 0.928 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -28.220 16.064 -14.883 35.720 hybrid contribution 0.648 -0.334 1.015 1.250 sum -27.572 15.729 -13.868 34.640 Atomic orbital electron populations 1.20827 0.89306 1.03552 1.03191 1.20235 0.97533 0.92690 0.98438 1.21062 0.92784 0.98590 1.01829 1.20124 0.94427 0.94613 1.00349 1.20800 0.99897 0.92776 1.03546 1.17385 0.82568 0.93082 1.05213 1.43107 1.04470 1.49615 1.33310 1.20701 0.89942 0.78162 0.80903 1.90738 1.70194 1.45008 1.36222 1.21092 0.89327 0.98682 0.93045 1.45608 1.06989 1.52280 1.32360 1.20554 0.81672 0.80479 0.85758 1.90639 1.55917 1.50688 1.45643 1.22005 0.90654 1.00951 0.96172 1.61709 1.03336 1.07538 1.53716 1.22269 1.00210 0.90189 0.98008 1.19461 0.95094 0.89412 0.87925 1.21418 0.94802 1.22531 1.17813 0.92297 1.25867 1.03539 0.95314 0.94688 1.70060 1.38286 1.26431 1.22395 0.85438 0.78992 0.78063 0.78125 1.19351 1.20589 1.19554 1.20024 0.94463 0.94675 0.99563 1.20784 0.99119 0.94012 1.02127 1.20978 0.92680 0.98797 1.02379 0.90066 0.91174 0.90500 0.83711 0.89291 0.90305 0.91729 0.73485 0.87054 0.86784 0.74666 0.91240 0.87487 0.96946 0.92611 0.90490 1.01123 0.96932 0.92614 0.91476 0.90831 0.92828 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 71.23 0.71 -0.22 16 2 C -0.09 -1.23 5.88 -19.84 -0.12 -1.34 16 3 C -0.12 -1.63 9.35 22.25 0.21 -1.42 16 4 C -0.09 -1.32 5.90 -19.74 -0.12 -1.44 16 5 C -0.11 -1.01 9.67 71.24 0.69 -0.32 16 6 C 0.11 1.89 5.84 38.15 0.22 2.12 16 7 N -0.66 -9.04 3.91 -303.51 -1.19 -10.22 16 8 C 0.52 9.38 6.04 87.66 0.53 9.91 16 9 O -0.54 -13.61 12.73 -3.06 -0.04 -13.65 16 10 C 0.11 1.88 6.16 85.63 0.53 2.40 16 11 N -0.72 -17.01 5.53 -466.80 -2.58 -19.59 16 12 C 0.53 16.85 7.55 87.66 0.66 17.52 16 13 O -0.55 -20.97 14.31 -3.04 -0.04 -21.02 16 14 C 0.03 1.19 5.45 85.56 0.47 1.66 16 15 N -0.54 -24.69 4.49 -931.67 -4.18 -28.87 16 16 C 0.04 1.77 9.03 127.69 1.15 2.92 16 17 C 0.21 11.21 4.72 85.56 0.40 11.61 16 18 C -0.53 -30.76 8.46 25.60 0.22 -30.55 16 19 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 20 C 0.00 0.24 5.46 84.66 0.46 0.70 16 21 N -0.93 -56.19 13.29 21.45 0.28 -55.90 16 22 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 26 C -0.09 -1.62 5.48 -19.74 -0.11 -1.73 16 27 C -0.10 -1.98 8.22 71.24 0.59 -1.39 16 28 C -0.13 -2.15 9.38 22.25 0.21 -1.94 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 31 H 0.08 0.49 8.08 -2.39 -0.02 0.47 16 32 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 33 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 35 H 0.06 0.61 7.45 -2.39 -0.02 0.59 16 36 H 0.43 3.14 8.68 -92.70 -0.80 2.34 16 37 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.42 9.36 7.44 -92.71 -0.69 8.67 16 40 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 41 H 0.11 3.60 7.93 -2.39 -0.02 3.59 16 42 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.06 2.55 6.76 -2.39 -0.02 2.54 16 44 H 0.08 3.09 5.88 -2.39 -0.01 3.07 16 45 H -0.03 -1.66 8.12 -2.39 -0.02 -1.68 16 46 H 0.01 0.72 7.93 -2.39 -0.02 0.70 16 47 H 0.27 15.05 8.31 -92.71 -0.77 14.27 16 48 H 0.07 1.53 7.09 -2.39 -0.02 1.51 16 49 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 50 H 0.05 1.02 6.16 -2.38 -0.01 1.00 16 51 H 0.13 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -76.01 413.91 0.44 -75.57 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -0.54 Total: 18.05 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 6.70 Total: 8.49 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -7.67 Total: -114.59 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.08 Total: -34.66 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -76.01 0.44 -75.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645630.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.209 kcal (2) G-P(sol) polarization free energy of solvation -76.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds