Wall clock time and date at job start Wed Apr 1 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38313 * 119.96683 * 2 1 4 4 C 1.38261 * 120.15385 * 179.97438 * 3 2 1 5 5 C 1.38121 * 120.07780 * 0.27777 * 4 3 2 6 6 C 1.38913 * 119.92101 * 359.48616 * 5 4 3 7 7 N 1.39727 * 120.07674 * 180.25506 * 6 5 4 8 8 C 1.34773 * 119.99511 * 35.38758 * 7 6 5 9 9 O 1.21374 * 120.00516 * 5.00373 * 8 7 6 10 10 C 1.49362 * 119.99353 * 184.99822 * 8 7 6 11 11 O 1.21358 * 120.00391 * 354.44880 * 10 8 7 12 12 N 1.34776 * 119.99746 * 174.43841 * 10 8 7 13 13 C 1.46504 * 119.99988 * 354.64426 * 12 10 8 14 14 C 1.50700 * 109.47142 * 84.94159 * 13 12 10 15 15 H 1.08001 * 120.00322 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99609 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99688 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00338 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.47308 * 90.00012 * 18 16 14 20 20 H 1.48500 * 109.47258 * 209.99941 * 18 16 14 21 21 H 1.48505 * 109.47321 * 330.00337 * 18 16 14 22 22 C 1.46502 * 120.00209 * 174.63690 * 12 10 8 23 23 C 1.52995 * 109.46943 * 90.00460 * 22 12 10 24 24 C 1.53002 * 109.47232 * 180.02562 * 23 22 12 25 25 N 1.46892 * 109.47171 * 180.02562 * 24 23 22 26 26 C 1.46904 * 111.00412 * 66.04461 * 25 24 23 27 27 C 1.46908 * 110.99980 * 189.99830 * 25 24 23 28 28 C 1.38082 * 119.95670 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47161 * 90.00035 * 1 2 3 30 30 H 1.08991 * 109.47704 * 210.00330 * 1 2 3 31 31 H 1.09000 * 109.46861 * 330.00318 * 1 2 3 32 32 H 1.08006 * 119.91985 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.96301 * 179.97438 * 4 3 2 34 34 H 1.08004 * 120.04153 * 179.74744 * 5 4 3 35 35 H 0.96995 * 119.99872 * 215.39026 * 7 6 5 36 36 H 1.09003 * 109.46795 * 204.93935 * 13 12 10 37 37 H 1.08997 * 109.47209 * 324.93575 * 13 12 10 38 38 H 0.96997 * 119.99535 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.47339 * 210.00544 * 22 12 10 40 40 H 1.09004 * 109.46474 * 330.00457 * 22 12 10 41 41 H 1.09002 * 109.47172 * 300.00186 * 23 22 12 42 42 H 1.08995 * 109.47731 * 60.00079 * 23 22 12 43 43 H 1.09002 * 109.46733 * 299.99890 * 24 23 22 44 44 H 1.09004 * 109.47274 * 59.99409 * 24 23 22 45 45 H 1.08997 * 109.46943 * 59.99600 * 26 25 24 46 46 H 1.09001 * 109.46994 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.46865 * 299.99899 * 26 25 24 48 48 H 1.09000 * 109.46774 * 59.99847 * 27 25 24 49 49 H 1.08999 * 109.47232 * 180.02562 * 27 25 24 50 50 H 1.09001 * 109.46572 * 299.99965 * 27 25 24 51 51 H 1.08001 * 120.03694 * 359.95423 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5805 1.2027 0.0005 5 6 4.2766 0.0098 -0.0047 6 6 3.5860 -1.1955 0.0002 7 7 4.2870 -2.4042 0.0003 8 6 5.4505 -2.5083 0.6724 9 8 5.8442 -1.5824 1.3514 10 6 6.2555 -3.7631 0.5817 11 8 5.8156 -4.7246 -0.0138 12 7 7.4707 -3.8274 1.1612 13 6 8.0523 -2.6326 1.7781 14 6 7.5441 -2.4986 3.1905 15 1 6.8564 -3.2300 3.5887 16 6 7.9565 -1.4416 3.9740 17 7 7.5126 -1.3244 5.2065 18 14 9.1453 -0.1763 3.2851 19 1 8.3810 0.9222 2.6412 20 1 9.9732 0.3766 4.3870 21 1 10.0270 -0.8215 2.2792 22 6 8.2100 -5.0922 1.1743 23 6 9.0848 -5.1845 -0.0775 24 6 9.8565 -6.5056 -0.0642 25 7 10.6969 -6.5939 -1.2657 26 6 11.7525 -5.5724 -1.2461 27 6 11.2689 -7.9393 -1.4104 28 6 2.1965 -1.1963 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8898 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6560 2.1325 0.0004 33 1 4.1168 2.1401 0.0001 34 1 5.3566 0.0140 -0.0084 35 1 3.9362 -3.1683 -0.4833 36 1 9.1386 -2.7220 1.7897 37 1 7.7663 -1.7514 1.2038 38 1 7.8030 -0.5810 5.7578 39 1 8.8406 -5.1353 2.0623 40 1 7.5060 -5.9243 1.1877 41 1 8.4542 -5.1413 -0.9655 42 1 9.7887 -4.3524 -0.0910 43 1 10.4870 -6.5491 0.8239 44 1 9.1523 -7.3376 -0.0508 45 1 12.3818 -5.7171 -0.3680 46 1 12.3602 -5.6606 -2.1467 47 1 11.2990 -4.5820 -1.2089 48 1 10.4637 -8.6694 -1.4925 49 1 11.8869 -7.9768 -2.3074 50 1 11.8807 -8.1696 -0.5381 51 1 1.6564 -2.1316 -0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122088793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:57 Heat of formation + Delta-G solvation = -21.703666 kcal Electronic energy + Delta-G solvation = -30891.536074 eV Core-core repulsion = 26791.748153 eV Total energy + Delta-G solvation = -4099.787922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.62193 -39.26755 -37.97221 -37.49260 -35.82707 -34.44092 -32.73197 -32.33958 -31.60711 -29.72684 -28.03207 -27.67189 -26.90227 -26.55059 -24.41615 -22.70521 -22.49175 -22.14865 -20.89706 -20.47933 -19.18926 -17.45482 -17.02113 -16.71860 -16.33639 -15.89844 -15.62295 -15.42961 -15.29784 -15.07177 -14.59754 -14.51897 -14.11396 -13.98917 -13.78899 -13.68304 -13.37437 -13.25353 -12.93346 -12.51597 -12.45930 -12.30183 -12.23007 -12.08771 -12.00369 -11.88936 -11.75387 -11.52587 -11.36390 -11.31560 -11.08534 -10.98385 -10.71653 -10.53111 -10.33872 -10.19401 -9.98452 -9.52568 -8.81839 -8.60088 -8.50345 -8.43993 -8.01263 -7.86923 -6.05716 -4.02463 1.35710 1.51671 2.12641 2.80995 3.29583 3.34046 3.37393 3.68954 3.81699 4.00855 4.07508 4.41830 4.85594 4.87960 4.96947 4.97164 5.05544 5.17956 5.22883 5.27563 5.29492 5.35781 5.43801 5.50381 5.52857 5.53832 5.54775 5.63150 5.66248 5.71500 5.74954 5.80884 5.86032 5.87591 5.98529 6.14968 6.26360 6.37178 6.46149 6.47822 6.50672 6.66058 6.70152 6.84090 6.93847 6.96174 7.08560 7.21798 7.48591 7.56795 7.85275 8.22207 8.47056 8.59275 8.95043 9.54423 11.07978 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.003249 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.704031 B = 8614.656283 C =10676.175707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.095 4.095 5 C -0.125 4.125 6 C 0.164 3.836 7 N -0.663 5.663 8 C 0.489 3.511 9 O -0.432 6.432 10 C 0.511 3.489 11 O -0.552 6.552 12 N -0.554 5.554 13 C 0.203 3.797 14 C -0.511 4.511 15 H 0.072 0.928 16 C 0.080 3.920 17 N -0.897 5.897 18 Si 0.873 3.127 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.268 1.268 22 C 0.119 3.881 23 C -0.131 4.131 24 C 0.059 3.941 25 N -0.548 5.548 26 C 0.020 3.980 27 C 0.025 3.975 28 C -0.148 4.148 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.416 0.584 36 H 0.030 0.970 37 H 0.051 0.949 38 H 0.263 0.737 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.025 0.975 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.065 0.935 50 H 0.024 0.976 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.040 -3.229 -13.851 14.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.073 4.073 3 C -0.160 4.160 4 C -0.114 4.114 5 C -0.145 4.145 6 C 0.070 3.930 7 N -0.312 5.312 8 C 0.270 3.730 9 O -0.299 6.299 10 C 0.294 3.706 11 O -0.432 6.432 12 N -0.284 5.284 13 C 0.083 3.917 14 C -0.550 4.550 15 H 0.090 0.910 16 C -0.122 4.122 17 N -0.536 5.536 18 Si 0.700 3.300 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.193 1.193 22 C -0.004 4.004 23 C -0.169 4.169 24 C -0.070 4.070 25 N -0.272 5.272 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.168 4.168 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.253 0.747 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.095 0.905 45 H 0.044 0.956 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.084 0.916 50 H 0.042 0.958 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.128 -2.882 -13.848 14.486 hybrid contribution 1.038 0.258 0.489 1.176 sum -2.090 -2.624 -13.358 13.773 Atomic orbital electron populations 1.20760 0.91179 1.02757 1.02084 1.19634 0.95789 0.92573 0.99255 1.20947 0.94191 0.97297 1.03592 1.20992 0.94053 0.97678 0.98671 1.21167 1.01017 0.90997 1.01303 1.17685 0.90711 0.85645 0.99002 1.43239 1.22782 1.13073 1.52083 1.20382 0.82193 0.89665 0.80749 1.90988 1.66955 1.38801 1.33201 1.19750 0.82718 0.87783 0.80377 1.90669 1.71062 1.38095 1.43384 1.47858 1.15620 1.12552 1.52367 1.20238 0.93750 0.82432 0.95292 1.21051 1.28341 1.11189 0.94384 0.90988 1.24719 0.95958 0.96987 0.94556 1.69889 1.44451 1.31323 1.07910 0.86915 0.81382 0.82826 0.78866 1.19820 1.21337 1.19276 1.21419 0.95059 0.86054 0.97870 1.21954 0.98827 0.96819 0.99342 1.22067 0.95917 0.98735 0.90258 1.61965 1.21686 1.04150 1.39419 1.22447 0.93562 0.96402 1.00366 1.22370 0.99272 0.90295 1.00397 1.20756 0.91986 0.98334 1.05756 0.91317 0.91593 0.91564 0.86281 0.85825 0.84941 0.74728 0.95217 0.93185 0.92686 0.89658 0.90279 0.90686 0.91653 0.94516 0.90524 0.95597 0.91690 0.90863 0.91363 0.91586 0.95770 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 2 C -0.07 -0.89 5.88 -104.65 -0.62 -1.51 16 3 C -0.14 -1.78 9.70 -39.55 -0.38 -2.16 16 4 C -0.10 -1.35 10.04 -39.62 -0.40 -1.75 16 5 C -0.12 -2.07 8.65 -39.37 -0.34 -2.41 16 6 C 0.16 2.64 6.24 -83.75 -0.52 2.12 16 7 N -0.66 -10.95 5.32 -10.29 -0.05 -11.01 16 8 C 0.49 9.83 7.42 -11.63 -0.09 9.74 16 9 O -0.43 -10.09 9.97 5.48 0.05 -10.04 16 10 C 0.51 10.33 7.68 -11.63 -0.09 10.24 16 11 O -0.55 -11.04 16.12 5.49 0.09 -10.95 16 12 N -0.55 -11.25 2.47 -175.60 -0.43 -11.68 16 13 C 0.20 4.67 3.82 -5.19 -0.02 4.65 16 14 C -0.51 -14.06 8.29 -34.44 -0.29 -14.34 16 15 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 16 C 0.08 2.28 5.47 -17.81 -0.10 2.19 16 17 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 18 Si 0.87 21.25 27.47 -169.99 -4.67 16.58 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 22 C 0.12 2.01 5.34 -4.04 -0.02 1.99 16 23 C -0.13 -1.90 5.46 -26.73 -0.15 -2.04 16 24 C 0.06 0.72 4.96 -3.83 -0.02 0.70 16 25 N -0.55 -6.51 5.02 -251.25 -1.26 -7.78 16 26 C 0.02 0.22 9.32 60.07 0.56 0.78 16 27 C 0.03 0.24 9.57 60.07 0.57 0.81 16 28 C -0.15 -2.02 9.62 -39.38 -0.38 -2.40 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.13 2.40 6.56 -52.48 -0.34 2.05 16 35 H 0.42 5.89 8.30 -40.82 -0.34 5.55 16 36 H 0.03 0.66 7.09 -51.93 -0.37 0.30 16 37 H 0.05 1.19 5.35 -51.93 -0.28 0.91 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 40 H 0.08 1.31 7.50 -51.93 -0.39 0.92 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 0.97 6.55 -51.93 -0.34 0.63 16 43 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 44 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 45 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 47 H 0.07 0.84 6.47 -51.93 -0.34 0.51 16 48 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 49 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 50 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 51 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 414.27 15.07 6.24 6.24 Total: -1.00 -32.80 414.27 -9.47 -42.28 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -8.31 Total: 6.99 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.91 Total: 5.96 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.98 Total: -57.06 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: 0.14 Total: -20.99 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.80 -9.47 -42.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122088793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.574 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds