Wall clock time and date at job start Wed Apr 1 2020 05:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38313 * 119.96683 * 2 1 4 4 C 1.38261 * 120.15385 * 179.97438 * 3 2 1 5 5 C 1.38121 * 120.07780 * 0.27777 * 4 3 2 6 6 C 1.38913 * 119.92101 * 359.48616 * 5 4 3 7 7 N 1.39727 * 120.07674 * 180.25506 * 6 5 4 8 8 C 1.34773 * 119.99511 * 35.38758 * 7 6 5 9 9 O 1.21374 * 120.00516 * 5.00373 * 8 7 6 10 10 C 1.49362 * 119.99353 * 184.99822 * 8 7 6 11 11 O 1.21358 * 120.00391 * 354.44880 * 10 8 7 12 12 N 1.34776 * 119.99746 * 174.43841 * 10 8 7 13 13 C 1.46504 * 119.99988 * 354.64426 * 12 10 8 14 14 C 1.50700 * 109.47142 * 84.94159 * 13 12 10 15 15 H 1.08001 * 120.00322 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99609 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99688 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00338 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.47308 * 90.00012 * 18 16 14 20 20 H 1.48500 * 109.47258 * 209.99941 * 18 16 14 21 21 H 1.48505 * 109.47321 * 330.00337 * 18 16 14 22 22 C 1.46502 * 120.00209 * 174.63690 * 12 10 8 23 23 C 1.52995 * 109.46943 * 90.00460 * 22 12 10 24 24 C 1.53002 * 109.47232 * 180.02562 * 23 22 12 25 25 N 1.46892 * 109.47171 * 180.02562 * 24 23 22 26 26 C 1.46904 * 111.00412 * 66.04461 * 25 24 23 27 27 C 1.46908 * 110.99980 * 189.99830 * 25 24 23 28 28 C 1.38082 * 119.95670 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47161 * 90.00035 * 1 2 3 30 30 H 1.08991 * 109.47704 * 210.00330 * 1 2 3 31 31 H 1.09000 * 109.46861 * 330.00318 * 1 2 3 32 32 H 1.08006 * 119.91985 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.96301 * 179.97438 * 4 3 2 34 34 H 1.08004 * 120.04153 * 179.74744 * 5 4 3 35 35 H 0.96995 * 119.99872 * 215.39026 * 7 6 5 36 36 H 1.09003 * 109.46795 * 204.93935 * 13 12 10 37 37 H 1.08997 * 109.47209 * 324.93575 * 13 12 10 38 38 H 0.96997 * 119.99535 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.47339 * 210.00544 * 22 12 10 40 40 H 1.09004 * 109.46474 * 330.00457 * 22 12 10 41 41 H 1.09002 * 109.47172 * 300.00186 * 23 22 12 42 42 H 1.08995 * 109.47731 * 60.00079 * 23 22 12 43 43 H 1.09002 * 109.46733 * 299.99890 * 24 23 22 44 44 H 1.09004 * 109.47274 * 59.99409 * 24 23 22 45 45 H 1.08997 * 109.46943 * 59.99600 * 26 25 24 46 46 H 1.09001 * 109.46994 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.46865 * 299.99899 * 26 25 24 48 48 H 1.09000 * 109.46774 * 59.99847 * 27 25 24 49 49 H 1.08999 * 109.47232 * 180.02562 * 27 25 24 50 50 H 1.09001 * 109.46572 * 299.99965 * 27 25 24 51 51 H 1.08001 * 120.03694 * 359.95423 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1982 0.0000 4 6 3.5805 1.2027 0.0005 5 6 4.2766 0.0098 -0.0047 6 6 3.5860 -1.1955 0.0002 7 7 4.2870 -2.4042 0.0003 8 6 5.4505 -2.5083 0.6724 9 8 5.8442 -1.5824 1.3514 10 6 6.2555 -3.7631 0.5817 11 8 5.8156 -4.7246 -0.0138 12 7 7.4707 -3.8274 1.1612 13 6 8.0523 -2.6326 1.7781 14 6 7.5441 -2.4986 3.1905 15 1 6.8564 -3.2300 3.5887 16 6 7.9565 -1.4416 3.9740 17 7 7.5126 -1.3244 5.2065 18 14 9.1453 -0.1763 3.2851 19 1 8.3810 0.9222 2.6412 20 1 9.9732 0.3766 4.3870 21 1 10.0270 -0.8215 2.2792 22 6 8.2100 -5.0922 1.1743 23 6 9.0848 -5.1845 -0.0775 24 6 9.8565 -6.5056 -0.0642 25 7 10.6969 -6.5939 -1.2657 26 6 11.7525 -5.5724 -1.2461 27 6 11.2689 -7.9393 -1.4104 28 6 2.1965 -1.1963 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8898 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6560 2.1325 0.0004 33 1 4.1168 2.1401 0.0001 34 1 5.3566 0.0140 -0.0084 35 1 3.9362 -3.1683 -0.4833 36 1 9.1386 -2.7220 1.7897 37 1 7.7663 -1.7514 1.2038 38 1 7.8030 -0.5810 5.7578 39 1 8.8406 -5.1353 2.0623 40 1 7.5060 -5.9243 1.1877 41 1 8.4542 -5.1413 -0.9655 42 1 9.7887 -4.3524 -0.0910 43 1 10.4870 -6.5491 0.8239 44 1 9.1523 -7.3376 -0.0508 45 1 12.3818 -5.7171 -0.3680 46 1 12.3602 -5.6606 -2.1467 47 1 11.2990 -4.5820 -1.2089 48 1 10.4637 -8.6694 -1.4925 49 1 11.8869 -7.9768 -2.3074 50 1 11.8807 -8.1696 -0.5381 51 1 1.6564 -2.1316 -0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122088793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:56 Heat of formation + Delta-G solvation = -43.411732 kcal Electronic energy + Delta-G solvation = -30892.477407 eV Core-core repulsion = 26791.748153 eV Total energy + Delta-G solvation = -4100.729254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.11986 -40.58888 -39.25612 -38.62077 -37.37678 -35.82437 -34.69924 -33.35764 -33.06335 -30.93100 -29.89645 -28.48354 -27.98765 -27.67263 -25.76442 -24.48320 -23.75180 -23.29175 -21.97213 -21.70125 -20.65693 -19.10741 -18.96421 -18.20947 -17.66545 -17.15251 -16.90220 -16.73113 -16.47877 -16.29126 -16.05326 -15.71268 -15.63118 -15.21110 -14.92766 -14.87756 -14.73575 -14.49800 -14.40343 -14.02447 -13.88934 -13.47470 -13.27295 -13.22741 -13.14610 -12.98803 -12.82577 -12.66627 -12.61581 -12.53075 -12.37577 -12.34480 -12.18200 -12.06903 -12.01182 -11.70047 -11.52206 -11.28188 -10.74125 -10.36346 -9.70057 -9.66218 -9.31188 -9.11887 -8.25232 -6.25930 0.06502 0.42409 0.67418 1.31438 1.37750 1.39771 1.45300 2.16513 2.36637 2.47110 2.83960 3.04168 3.12370 3.34171 3.89683 3.91661 3.98092 4.07760 4.19875 4.23082 4.33747 4.40706 4.42597 4.43386 4.50254 4.54212 4.57283 4.61246 4.70698 4.73926 4.78081 4.83115 4.90417 4.91985 4.95735 5.01130 5.02395 5.09613 5.21563 5.24218 5.31317 5.39715 5.44513 5.49786 5.56795 5.66017 6.01095 6.06291 6.07738 6.11265 6.13337 6.36599 6.69739 6.74040 7.01432 7.34822 8.92261 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.003249 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.704031 B = 8614.656283 C =10676.175707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.071 4.071 3 C -0.136 4.136 4 C -0.105 4.105 5 C -0.152 4.152 6 C 0.135 3.865 7 N -0.646 5.646 8 C 0.487 3.513 9 O -0.475 6.475 10 C 0.509 3.491 11 O -0.550 6.550 12 N -0.560 5.560 13 C 0.216 3.784 14 C -0.502 4.502 15 H 0.025 0.975 16 C 0.021 3.979 17 N -0.949 5.949 18 Si 0.936 3.064 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.237 1.237 22 C 0.116 3.884 23 C -0.115 4.115 24 C 0.064 3.936 25 N -0.564 5.564 26 C 0.020 3.980 27 C 0.025 3.975 28 C -0.149 4.149 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.139 0.861 34 H 0.107 0.893 35 H 0.426 0.574 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.264 0.736 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.028 0.972 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.029 0.971 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.368 -2.976 -15.795 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.072 4.072 3 C -0.155 4.155 4 C -0.123 4.123 5 C -0.172 4.172 6 C 0.041 3.959 7 N -0.295 5.295 8 C 0.268 3.732 9 O -0.345 6.345 10 C 0.291 3.709 11 O -0.431 6.431 12 N -0.290 5.290 13 C 0.095 3.905 14 C -0.541 4.541 15 H 0.043 0.957 16 C -0.176 4.176 17 N -0.590 5.590 18 Si 0.760 3.240 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.160 1.160 22 C -0.006 4.006 23 C -0.154 4.154 24 C -0.064 4.064 25 N -0.288 5.288 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.169 4.169 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.156 0.844 34 H 0.125 0.875 35 H 0.265 0.735 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.100 0.900 45 H 0.047 0.953 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.097 0.903 50 H 0.047 0.953 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.475 -2.679 -15.848 16.444 hybrid contribution 0.951 0.133 1.052 1.425 sum -2.524 -2.546 -14.796 15.224 Atomic orbital electron populations 1.20836 0.88309 1.03813 1.03589 1.20125 0.97835 0.91889 0.97363 1.21357 0.93536 0.98874 1.01703 1.21250 0.95187 0.97381 0.98516 1.21159 1.00145 0.92502 1.03399 1.17940 0.91816 0.85023 1.01102 1.43081 1.21627 1.13856 1.50907 1.20465 0.82992 0.89093 0.80611 1.90963 1.68251 1.39911 1.35404 1.19863 0.82771 0.87940 0.80344 1.90654 1.70972 1.38055 1.43407 1.47882 1.16013 1.12958 1.52139 1.19923 0.94288 0.83647 0.92648 1.21168 1.26743 1.09726 0.96450 0.95683 1.25583 0.98089 0.99273 0.94703 1.70047 1.46769 1.32509 1.09677 0.85896 0.79406 0.79862 0.78849 1.20238 1.20862 1.15986 1.21615 0.95212 0.84527 0.99260 1.21776 0.98191 0.98253 0.97193 1.21969 0.96082 0.97405 0.90982 1.61954 1.22383 1.05547 1.38930 1.22465 0.93418 0.95656 1.01263 1.22423 0.99619 0.89049 1.01204 1.21050 0.90905 1.00030 1.04929 0.89433 0.90962 0.90169 0.83106 0.84350 0.87459 0.73509 0.93522 0.93399 0.92722 0.89505 0.90119 0.92055 0.91778 0.94004 0.90002 0.95306 0.90236 0.91874 0.90933 0.90343 0.95276 0.83815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.24 0.71 -0.87 16 2 C -0.07 -1.60 5.88 -19.88 -0.12 -1.72 16 3 C -0.14 -3.12 9.70 22.29 0.22 -2.90 16 4 C -0.10 -2.93 10.04 22.25 0.22 -2.70 16 5 C -0.15 -5.21 8.65 22.40 0.19 -5.02 16 6 C 0.13 4.39 6.24 38.21 0.24 4.63 16 7 N -0.65 -21.82 5.32 -304.83 -1.62 -23.44 16 8 C 0.49 20.28 7.42 87.24 0.65 20.93 16 9 O -0.47 -23.19 9.97 -3.32 -0.03 -23.22 16 10 C 0.51 20.96 7.68 87.24 0.67 21.63 16 11 O -0.55 -22.10 16.12 -3.27 -0.05 -22.16 16 12 N -0.56 -23.07 2.47 -827.83 -2.04 -25.11 16 13 C 0.22 10.04 3.82 85.63 0.33 10.37 16 14 C -0.50 -28.56 8.29 25.60 0.21 -28.35 16 15 H 0.02 1.62 8.06 -2.91 -0.02 1.59 16 16 C 0.02 1.22 5.47 84.65 0.46 1.68 16 17 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 18 Si 0.94 44.19 27.47 68.60 1.88 46.07 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.24 -9.89 6.54 99.48 0.65 -9.24 16 22 C 0.12 3.90 5.34 86.38 0.46 4.36 16 23 C -0.12 -3.26 5.46 30.59 0.17 -3.10 16 24 C 0.06 1.50 4.96 86.31 0.43 1.93 16 25 N -0.56 -12.42 5.02 -948.82 -4.76 -17.18 16 26 C 0.02 0.40 9.32 127.69 1.19 1.59 16 27 C 0.02 0.42 9.57 127.69 1.22 1.64 16 28 C -0.15 -3.89 9.62 22.40 0.22 -3.67 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.99 8.08 -2.39 -0.02 0.97 16 31 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 32 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 34 H 0.11 4.16 6.56 -2.91 -0.02 4.14 16 35 H 0.43 12.13 8.30 -92.71 -0.77 11.36 16 36 H 0.05 2.02 7.09 -2.39 -0.02 2.01 16 37 H 0.05 2.30 5.35 -2.39 -0.01 2.29 16 38 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 39 H 0.09 2.87 8.07 -2.39 -0.02 2.85 16 40 H 0.08 2.67 7.50 -2.38 -0.02 2.65 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.06 1.83 6.55 -2.39 -0.02 1.82 16 43 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 44 H 0.08 1.82 8.06 -2.39 -0.02 1.80 16 45 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 47 H 0.06 1.37 6.47 -2.39 -0.02 1.36 16 48 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 49 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 50 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -73.89 414.27 1.24 -72.65 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.10 Total: 31.71 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 7.47 Total: 20.43 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -8.13 Total: -125.48 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -0.09 Total: -45.37 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.88 Total: 46.07 kcal Total: -73.89 1.24 -72.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122088793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.234 kcal (2) G-P(sol) polarization free energy of solvation -73.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds