Wall clock time and date at job start Wed Apr 1 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38117 * 120.03754 * 2 1 4 4 C 1.38274 * 120.07248 * 179.97438 * 3 2 1 5 5 C 1.38309 * 120.15550 * 0.02562 * 4 3 2 6 6 C 1.38080 * 120.07814 * 359.73811 * 5 4 3 7 7 C 1.38910 * 120.03391 * 179.97438 * 2 1 3 8 8 N 1.39719 * 120.08245 * 0.02562 * 7 2 1 9 9 C 1.34778 * 120.00288 * 154.40845 * 8 7 2 10 10 O 1.21372 * 119.99640 * 4.11183 * 9 8 7 11 11 C 1.49352 * 119.99664 * 183.83548 * 9 8 7 12 12 O 1.21357 * 120.00307 * 354.69140 * 11 9 8 13 13 N 1.34777 * 119.99546 * 174.68515 * 11 9 8 14 14 C 1.46501 * 120.00316 * 3.73101 * 13 11 9 15 15 C 1.50703 * 109.47026 * 82.97229 * 14 13 11 16 16 H 1.08001 * 120.00097 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99950 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00429 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99866 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47031 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47534 * 119.99704 * 19 17 15 22 22 H 1.48507 * 109.46717 * 239.99739 * 19 17 15 23 23 C 1.46505 * 119.99940 * 183.73254 * 13 11 9 24 24 C 1.53001 * 109.47128 * 90.00023 * 23 13 11 25 25 C 1.52998 * 109.46994 * 179.97438 * 24 23 13 26 26 N 1.46901 * 109.47089 * 180.02562 * 25 24 23 27 27 C 1.46897 * 110.99847 * 169.99908 * 26 25 24 28 28 C 1.46908 * 110.99859 * 293.95461 * 26 25 24 29 29 H 1.08999 * 109.47414 * 270.02402 * 1 2 3 30 30 H 1.09001 * 109.47129 * 30.02349 * 1 2 3 31 31 H 1.09003 * 109.47299 * 150.02402 * 1 2 3 32 32 H 1.08001 * 119.96037 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.91712 * 179.97438 * 4 3 2 34 34 H 1.08002 * 119.96571 * 179.97438 * 5 4 3 35 35 H 1.07998 * 120.04135 * 180.26034 * 6 5 4 36 36 H 0.97004 * 119.99894 * 334.40739 * 8 7 2 37 37 H 1.08999 * 109.47615 * 202.97055 * 14 13 11 38 38 H 1.09007 * 109.47010 * 322.97600 * 14 13 11 39 39 H 0.97005 * 120.00076 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.46791 * 210.00250 * 23 13 11 41 41 H 1.08997 * 109.46973 * 330.00256 * 23 13 11 42 42 H 1.08992 * 109.46989 * 300.00120 * 24 23 13 43 43 H 1.09005 * 109.46726 * 60.00266 * 24 23 13 44 44 H 1.09001 * 109.46887 * 300.00204 * 25 24 23 45 45 H 1.08997 * 109.47012 * 60.00292 * 25 24 23 46 46 H 1.09001 * 109.46975 * 60.00379 * 27 26 25 47 47 H 1.09001 * 109.46967 * 179.97438 * 27 26 25 48 48 H 1.08994 * 109.47144 * 299.99730 * 27 26 25 49 49 H 1.08998 * 109.46550 * 59.99906 * 28 26 25 50 50 H 1.08996 * 109.46849 * 180.02562 * 28 26 25 51 51 H 1.09001 * 109.46941 * 299.99983 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5811 1.1965 0.0005 5 6 4.2767 0.0010 0.0005 6 6 3.5919 -1.1980 0.0055 7 6 2.2023 -1.2026 0.0005 8 7 1.5062 -2.4140 0.0005 9 6 2.0833 -3.5229 -0.5032 10 8 3.2337 -3.4868 -0.8882 11 6 1.3090 -4.7977 -0.5818 12 8 0.1948 -4.8613 -0.1050 13 7 1.8478 -5.8773 -1.1823 14 6 3.2227 -5.8259 -1.6854 15 6 4.1815 -6.1014 -0.5558 16 1 3.8044 -6.2959 0.4374 17 6 5.5401 -6.1053 -0.7902 18 7 5.9995 -5.8691 -1.9996 19 14 6.7285 -6.4476 0.6099 20 1 5.9646 -6.6812 1.8617 21 1 7.5363 -7.6521 0.2904 22 1 7.6295 -5.2810 0.7907 23 6 1.0583 -7.1023 -1.3321 24 6 0.2994 -7.0608 -2.6600 25 6 -0.5246 -8.3404 -2.8167 26 7 -1.2528 -8.3008 -4.0919 27 6 -1.8644 -9.6028 -4.3895 28 6 -2.2622 -7.2334 -4.0888 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6584 2.1310 -0.0004 33 1 4.1192 2.1329 0.0001 34 1 5.3567 0.0053 0.0005 35 1 4.1356 -2.1311 0.0097 36 1 0.6074 -2.4569 0.3631 37 1 3.3532 -6.5774 -2.4640 38 1 3.4220 -4.8367 -2.0979 39 1 6.9554 -5.8722 -2.1646 40 1 1.7227 -7.9664 -1.3202 41 1 0.3474 -7.1793 -0.5096 42 1 -0.3649 -6.1967 -2.6719 43 1 1.0104 -6.9838 -3.4826 44 1 0.1402 -9.2042 -2.8050 45 1 -1.2355 -8.4178 -1.9942 46 1 -2.5636 -9.8657 -3.5957 47 1 -2.3975 -9.5454 -5.3385 48 1 -1.0863 -10.3633 -4.4549 49 1 -1.7731 -6.2714 -3.9355 50 1 -2.7867 -7.2266 -5.0442 51 1 -2.9758 -7.4105 -3.2841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122106611.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:00 Heat of formation + Delta-G solvation = -19.768486 kcal Electronic energy + Delta-G solvation = -31168.100996 eV Core-core repulsion = 27068.396990 eV Total energy + Delta-G solvation = -4099.704006 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69444 -39.23115 -37.89015 -37.42980 -35.70393 -34.35211 -32.81419 -32.41935 -31.47653 -29.66403 -27.66638 -27.39789 -26.93491 -26.35070 -24.35328 -22.95378 -22.81018 -21.66472 -20.87601 -20.60271 -19.21529 -17.57469 -16.88230 -16.55648 -16.20904 -15.70460 -15.58507 -15.32153 -15.17766 -14.88143 -14.82297 -14.41522 -14.18673 -13.93763 -13.78995 -13.68794 -13.26037 -13.12752 -12.88877 -12.47019 -12.42205 -12.31960 -12.22034 -11.96114 -11.86841 -11.77470 -11.62194 -11.45319 -11.26371 -11.17246 -11.04939 -10.86261 -10.73517 -10.50774 -10.33005 -10.18731 -9.96792 -9.66054 -8.74325 -8.54076 -8.40122 -8.25184 -7.92657 -7.73789 -6.03932 -4.07006 1.37636 1.59527 2.18736 2.85607 3.28973 3.37065 3.40562 3.73735 3.87507 4.06421 4.14799 4.44482 4.87209 4.93913 4.97404 5.06209 5.09723 5.21153 5.27588 5.31776 5.32464 5.34041 5.48534 5.55350 5.57263 5.58786 5.61249 5.67196 5.69498 5.75402 5.80540 5.86410 5.91923 6.00840 6.04023 6.25697 6.33698 6.47412 6.49587 6.60736 6.66849 6.68916 6.80373 6.98025 7.00872 7.27593 7.35257 7.43744 7.57032 7.84906 8.07397 8.18230 8.32674 8.62569 8.95042 9.56195 11.04678 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007353 B = 0.003841 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3807.136825 B = 7288.423250 C =10434.396933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.143 4.143 5 C -0.103 4.103 6 C -0.130 4.130 7 C 0.156 3.844 8 N -0.656 5.656 9 C 0.490 3.510 10 O -0.432 6.432 11 C 0.508 3.492 12 O -0.562 6.562 13 N -0.555 5.555 14 C 0.221 3.779 15 C -0.519 4.519 16 H 0.054 0.946 17 C 0.070 3.930 18 N -0.887 5.887 19 Si 0.891 3.109 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.117 3.883 24 C -0.130 4.130 25 C 0.059 3.941 26 N -0.548 5.548 27 C 0.025 3.975 28 C 0.022 3.978 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.160 0.840 36 H 0.415 0.585 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.262 0.738 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.023 0.977 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.029 5.584 -0.078 14.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.127 4.127 3 C -0.123 4.123 4 C -0.162 4.162 5 C -0.122 4.122 6 C -0.150 4.150 7 C 0.061 3.939 8 N -0.303 5.303 9 C 0.272 3.728 10 O -0.301 6.301 11 C 0.291 3.709 12 O -0.444 6.444 13 N -0.284 5.284 14 C 0.102 3.898 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.132 4.132 18 N -0.526 5.526 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.007 4.007 24 C -0.169 4.169 25 C -0.069 4.069 26 N -0.272 5.272 27 C -0.123 4.123 28 C -0.126 4.126 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.178 0.822 36 H 0.253 0.747 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.041 0.959 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.083 0.917 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.230 5.543 -0.656 13.444 hybrid contribution -0.138 -0.387 1.530 1.584 sum -12.368 5.156 0.873 13.428 Atomic orbital electron populations 1.20714 0.91223 1.02911 1.02196 1.19597 0.95875 0.91805 1.05380 1.20722 0.94127 0.96487 1.00981 1.21064 0.94177 0.97967 1.02997 1.21103 1.00026 0.91949 0.99128 1.21879 0.92653 1.00739 0.99762 1.17683 0.91610 0.84346 1.00276 1.43255 1.19787 1.06803 1.60489 1.20473 0.87810 0.84904 0.79581 1.90857 1.15153 1.82948 1.41094 1.19697 0.85814 0.85122 0.80287 1.90646 1.20231 1.84642 1.48840 1.48250 1.16653 1.10148 1.53354 1.20136 0.73568 1.00741 0.95336 1.21252 0.90952 1.48556 0.95040 0.92759 1.24798 0.97943 0.95009 0.95498 1.69929 1.13777 1.48961 1.19938 0.86556 0.81163 0.77854 0.82504 1.19937 1.21022 1.20894 1.21406 0.95019 0.87362 0.96910 1.21947 0.99151 0.97185 0.98572 1.22066 0.96669 0.99068 0.89104 1.61960 1.27208 1.04767 1.33238 1.22369 0.98634 0.91065 1.00253 1.22431 0.93907 0.95758 1.00533 0.91279 0.91293 0.91669 0.86153 0.86427 0.85881 0.82228 0.74747 0.94867 0.90728 0.92864 0.89656 0.90639 0.91847 0.90508 0.90454 0.94722 0.95877 0.91582 0.91293 0.90901 0.91708 0.95755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.45 36.01 0.34 -0.84 16 2 C -0.12 -1.66 5.90 -104.42 -0.62 -2.27 16 3 C -0.10 -1.27 9.70 -39.61 -0.38 -1.66 16 4 C -0.14 -1.81 10.04 -39.54 -0.40 -2.21 16 5 C -0.10 -1.53 10.04 -39.61 -0.40 -1.93 16 6 C -0.13 -2.29 8.79 -39.37 -0.35 -2.64 16 7 C 0.16 2.54 6.43 -83.75 -0.54 2.00 16 8 N -0.66 -10.94 4.95 -10.29 -0.05 -10.99 16 9 C 0.49 9.89 7.65 -11.63 -0.09 9.80 16 10 O -0.43 -10.00 9.29 5.48 0.05 -9.95 16 11 C 0.51 10.42 7.66 -11.63 -0.09 10.33 16 12 O -0.56 -11.39 16.04 5.49 0.09 -11.31 16 13 N -0.55 -11.53 2.48 -175.60 -0.44 -11.96 16 14 C 0.22 5.38 4.77 -5.19 -0.02 5.36 16 15 C -0.52 -13.91 8.30 -34.44 -0.29 -14.20 16 16 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 17 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 18 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 19 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.12 2.02 5.40 -4.04 -0.02 1.99 16 24 C -0.13 -1.97 5.46 -26.73 -0.15 -2.11 16 25 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 26 N -0.55 -6.77 5.02 -251.26 -1.26 -8.03 16 27 C 0.03 0.25 9.57 60.06 0.57 0.82 16 28 C 0.02 0.25 9.32 60.07 0.56 0.81 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.06 0.70 7.00 -51.93 -0.36 0.33 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.16 3.29 5.53 -52.49 -0.29 3.00 16 36 H 0.42 6.05 6.91 -40.82 -0.28 5.77 16 37 H 0.03 0.84 8.02 -51.93 -0.42 0.43 16 38 H 0.08 1.99 5.42 -51.93 -0.28 1.70 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 41 H 0.08 1.28 7.37 -51.93 -0.38 0.90 16 42 H 0.06 1.00 6.55 -51.93 -0.34 0.66 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 45 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 46 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 47 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 48 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 49 H 0.07 0.87 6.47 -51.93 -0.34 0.54 16 50 H 0.06 0.63 8.12 -51.93 -0.42 0.20 16 51 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 413.67 15.07 6.23 6.23 Total: -1.00 -30.69 413.67 -9.78 -40.46 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -8.14 Total: 8.00 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -1.98 Total: 5.83 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -1.01 Total: -55.64 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.14 Total: -21.25 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.69 -9.78 -40.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122106611.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.696 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds