Wall clock time and date at job start Wed Apr 1 2020 04:55:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38233 * 120.00273 * 2 1
4 4 C 1.38231 * 120.00194 * 180.02562 * 3 2 1
5 5 C 1.38233 * 120.00149 * 359.97438 * 4 3 2
6 6 C 1.50695 * 120.00360 * 179.97438 * 5 4 3
7 7 N 1.46501 * 109.47168 * 90.00241 * 6 5 4
8 8 C 1.34778 * 119.99974 * 180.02562 * 7 6 5
9 9 O 1.21583 * 120.00062 * 359.97438 * 8 7 6
10 10 N 1.34780 * 119.99704 * 179.97438 * 8 7 6
11 11 C 1.46498 * 119.99734 * 174.98012 * 10 8 7
12 12 H 1.09000 * 109.47350 * 328.72138 * 11 10 8
13 13 C 1.53002 * 109.46931 * 88.71490 * 11 10 8
14 14 C 1.52999 * 109.47133 * 185.26733 * 13 11 10
15 15 C 1.52999 * 109.47130 * 66.76185 * 14 13 11
16 16 C 1.53007 * 109.47318 * 186.75772 * 14 13 11
17 17 C 1.50695 * 109.47312 * 208.71340 * 11 10 8
18 18 O 1.21289 * 119.99972 * 340.89978 * 17 11 10
19 19 N 1.34774 * 120.00326 * 160.89346 * 17 11 10
20 20 C 1.37092 * 120.00430 * 184.86980 * 19 17 11
21 21 H 1.08004 * 120.00347 * 359.97438 * 20 19 17
22 22 C 1.38957 * 120.00442 * 180.02562 * 20 19 17
23 23 N 1.31415 * 119.99271 * 0.02562 * 22 20 19
24 24 Si 1.86800 * 120.00251 * 179.97438 * 22 20 19
25 25 H 1.48501 * 109.46715 * 60.00306 * 24 22 20
26 26 H 1.48497 * 109.46846 * 179.97438 * 24 22 20
27 27 H 1.48490 * 109.47133 * 300.00229 * 24 22 20
28 28 C 1.38240 * 119.99687 * 0.25987 * 5 4 3
29 29 C 1.38236 * 120.00086 * 359.46817 * 28 5 4
30 30 H 1.09001 * 109.47496 * 89.99272 * 1 2 3
31 31 H 1.09000 * 109.47257 * 209.99617 * 1 2 3
32 32 H 1.09000 * 109.47024 * 329.99721 * 1 2 3
33 33 H 1.08008 * 119.99874 * 359.97438 * 3 2 1
34 34 H 1.08005 * 119.99847 * 179.97438 * 4 3 2
35 35 H 1.09005 * 109.47501 * 210.00156 * 6 5 4
36 36 H 1.09000 * 109.46872 * 330.00490 * 6 5 4
37 37 H 0.96996 * 120.00132 * 359.97438 * 7 6 5
38 38 H 0.96998 * 119.99965 * 354.97984 * 10 8 7
39 39 H 1.09004 * 109.47632 * 305.27189 * 13 11 10
40 40 H 1.09010 * 109.47259 * 65.27292 * 13 11 10
41 41 H 1.09000 * 109.47648 * 306.75489 * 14 13 11
42 42 H 1.09000 * 109.47438 * 64.14452 * 15 14 13
43 43 H 1.09004 * 109.47534 * 184.15224 * 15 14 13
44 44 H 1.08998 * 109.46527 * 304.14683 * 15 14 13
45 45 H 1.09004 * 109.46795 * 60.00165 * 16 14 13
46 46 H 1.08991 * 109.47015 * 180.02562 * 16 14 13
47 47 H 1.09003 * 109.46941 * 300.00682 * 16 14 13
48 48 H 0.96999 * 119.99555 * 4.87384 * 19 17 11
49 49 H 0.97007 * 119.99154 * 180.02562 * 23 22 20
50 50 H 1.08001 * 119.99858 * 179.73219 * 28 5 4
51 51 H 1.08002 * 120.00386 * 180.28176 * 29 28 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1971 0.0000
4 6 3.5805 1.1971 -0.0005
5 6 4.2717 0.0000 -0.0005
6 6 5.7787 -0.0001 -0.0017
7 7 6.2681 0.0004 1.3791
8 6 7.5934 0.0010 1.6244
9 8 8.3827 0.0006 0.6996
10 7 8.0436 0.0020 2.8948
11 6 9.4795 -0.1084 3.1630
12 1 9.9501 -0.7063 2.3825
13 6 10.1038 1.2883 3.1815
14 6 11.6216 1.1667 3.3305
15 6 12.2072 0.5200 2.0736
16 6 12.2289 2.5585 3.5181
17 6 9.6914 -0.7709 4.4999
18 8 8.7890 -0.8049 5.3096
19 7 10.8834 -1.3259 4.7957
20 6 11.0463 -2.0152 5.9694
21 1 10.2196 -2.1132 6.6574
22 6 12.2755 -2.5869 6.2747
23 7 13.2819 -2.4663 5.4383
24 14 12.4977 -3.5255 7.8744
25 1 11.5508 -4.6688 7.9130
26 1 13.8903 -4.0336 7.9608
27 1 12.2283 -2.6207 9.0206
28 6 3.5805 -1.1972 -0.0054
29 6 2.1981 -1.1972 0.0008
30 1 -0.3634 0.0001 -1.0277
31 1 -0.3634 -0.8900 0.5138
32 1 -0.3633 0.8900 0.5139
33 1 1.6582 2.1325 -0.0004
34 1 4.1205 2.1324 -0.0010
35 1 6.1416 -0.8904 -0.5155
36 1 6.1416 0.8897 -0.5161
37 1 5.6384 0.0011 2.1169
38 1 7.4168 0.0758 3.6313
39 1 9.8702 1.8031 2.2494
40 1 9.7006 1.8555 4.0206
41 1 11.8532 0.5494 4.1984
42 1 12.0399 1.1732 1.2172
43 1 13.2778 0.3659 2.2094
44 1 11.7213 -0.4399 1.8989
45 1 11.8117 3.0193 4.4135
46 1 13.3102 2.4718 3.6237
47 1 11.9972 3.1760 2.6501
48 1 11.6261 -1.2375 4.1780
49 1 14.1399 -2.8657 5.6512
50 1 4.1205 -2.1325 -0.0098
51 1 1.6581 -2.1325 0.0016
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000126800618.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:55:56
Heat of formation + Delta-G solvation = -64.232970 kcal
Electronic energy + Delta-G solvation = -30229.989817 eV
Core-core repulsion = 26128.357687 eV
Total energy + Delta-G solvation = -4101.632131 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 2.37 seconds
Orbital eigenvalues (eV)
-40.19799 -39.59812 -38.47510 -35.99975 -35.20419 -34.36859 -33.47899 -32.68031
-31.28015 -31.22116 -29.36984 -27.96818 -26.75135 -25.28502 -24.78098 -23.22525
-23.00920 -21.07358 -20.64536 -20.01695 -19.14071 -18.48159 -17.83296 -16.63046
-15.97398 -15.88568 -15.62937 -15.25707 -15.19746 -14.83312 -14.62117 -14.38176
-14.06356 -13.85992 -13.74459 -13.69836 -13.60972 -13.12107 -13.06238 -12.92535
-12.84490 -12.35162 -12.24721 -12.00453 -11.75839 -11.62554 -11.53219 -11.33700
-11.27444 -11.23165 -11.08455 -10.61683 -10.50431 -10.32566 -10.27485 -10.10694
-9.95939 -9.52661 -9.21802 -9.11453 -8.88577 -8.70984 -8.30521 -8.02842
-6.46771 -3.88347 0.92536 1.12151 2.86976 3.16385 3.23557 3.27477
3.43892 3.52634 3.81118 4.13038 4.41330 4.50821 4.53146 4.63210
4.73887 4.86953 4.90713 5.16933 5.17242 5.22749 5.30429 5.34455
5.36185 5.42616 5.44083 5.48899 5.58132 5.69989 5.79921 5.80882
5.93904 5.98065 6.09084 6.10009 6.16392 6.18374 6.27587 6.28895
6.34260 6.36644 6.41492 6.51679 6.59444 6.70279 6.76624 6.86634
6.90796 7.16336 7.49946 7.97331 8.28476 8.51101 8.84940 9.09528
9.44971 9.93444 10.69819
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013459 B = 0.002193 C = 0.001982
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2079.821871 B =12766.786865 C =14126.441705
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.082 4.082
3 C -0.124 4.124
4 C -0.095 4.095
5 C -0.111 4.111
6 C 0.183 3.817
7 N -0.746 5.746
8 C 0.705 3.295
9 O -0.594 6.594
10 N -0.721 5.721
11 C 0.152 3.848
12 H 0.100 0.900
13 C -0.113 4.113
14 C -0.112 4.112
15 C -0.146 4.146
16 C -0.139 4.139
17 C 0.434 3.566
18 O -0.596 6.596
19 N -0.550 5.550
20 C -0.306 4.306
21 H 0.104 0.896
22 C 0.026 3.974
23 N -0.894 5.894
24 Si 0.932 3.068
25 H -0.273 1.273
26 H -0.284 1.284
27 H -0.273 1.273
28 C -0.094 4.094
29 C -0.124 4.124
30 H 0.070 0.930
31 H 0.066 0.934
32 H 0.066 0.934
33 H 0.122 0.878
34 H 0.125 0.875
35 H 0.073 0.927
36 H 0.073 0.927
37 H 0.397 0.603
38 H 0.404 0.596
39 H 0.069 0.931
40 H 0.064 0.936
41 H 0.091 0.909
42 H 0.051 0.949
43 H 0.056 0.944
44 H 0.056 0.944
45 H 0.051 0.949
46 H 0.054 0.946
47 H 0.048 0.952
48 H 0.397 0.603
49 H 0.274 0.726
50 H 0.125 0.875
51 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.303 7.290 -11.843 22.199
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.082 4.082
3 C -0.142 4.142
4 C -0.114 4.114
5 C -0.112 4.112
6 C 0.059 3.941
7 N -0.402 5.402
8 C 0.405 3.595
9 O -0.473 6.473
10 N -0.376 5.376
11 C 0.043 3.957
12 H 0.118 0.882
13 C -0.153 4.153
14 C -0.131 4.131
15 C -0.203 4.203
16 C -0.196 4.196
17 C 0.220 3.780
18 O -0.482 6.482
19 N -0.187 5.187
20 C -0.435 4.435
21 H 0.121 0.879
22 C -0.177 4.177
23 N -0.534 5.534
24 Si 0.758 3.242
25 H -0.199 1.199
26 H -0.209 1.209
27 H -0.198 1.198
28 C -0.113 4.113
29 C -0.142 4.142
30 H 0.089 0.911
31 H 0.085 0.915
32 H 0.085 0.915
33 H 0.140 0.860
34 H 0.142 0.858
35 H 0.091 0.909
36 H 0.091 0.909
37 H 0.231 0.769
38 H 0.240 0.760
39 H 0.088 0.912
40 H 0.083 0.917
41 H 0.109 0.891
42 H 0.070 0.930
43 H 0.075 0.925
44 H 0.075 0.925
45 H 0.070 0.930
46 H 0.073 0.927
47 H 0.068 0.932
48 H 0.233 0.767
49 H 0.084 0.916
50 H 0.143 0.857
51 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -16.929 7.137 -12.151 22.027
hybrid contribution 0.007 -0.437 1.116 1.199
sum -16.922 6.700 -11.035 21.284
Atomic orbital electron populations
1.20816 0.91203 1.02896 1.02361 1.19994 0.96144 0.93280 0.98794
1.21038 0.94113 0.97595 1.01489 1.21111 0.94141 0.97682 0.98453
1.19923 0.95076 0.93535 1.02643 1.19956 0.88298 1.03005 0.82862
1.45118 1.05499 1.81310 1.08303 1.15882 0.82243 0.77812 0.83549
1.90903 1.54768 1.58287 1.43325 1.44816 1.08436 1.78218 1.06115
1.20667 0.80220 0.97401 0.97445 0.88224 1.21900 0.95254 0.95867
1.02255 1.21336 0.93886 0.97728 1.00126 1.21860 1.00848 1.00648
0.96919 1.21751 1.00591 0.96317 1.00967 1.19819 0.84494 0.84925
0.88786 1.90486 1.43110 1.64151 1.50442 1.42045 1.10324 1.45995
1.20309 1.19680 0.97943 1.28597 0.97278 0.87865 1.25294 0.95051
0.97982 0.99356 1.69613 1.02617 1.44777 1.36379 0.85905 0.77253
0.79657 0.81344 1.19882 1.20890 1.19836 1.21145 0.94168 0.97784
0.98195 1.21056 0.94125 0.97636 1.01336 0.91113 0.91457 0.91487
0.85984 0.85752 0.90854 0.90902 0.76939 0.76007 0.91201 0.91734
0.89059 0.93033 0.92484 0.92463 0.93001 0.92675 0.93244 0.76670
0.91608 0.85660 0.85935
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.64 10.01 36.01 0.36 -0.28 16
2 C -0.08 -0.64 5.88 -104.62 -0.62 -1.26 16
3 C -0.12 -0.99 9.70 -39.59 -0.38 -1.37 16
4 C -0.10 -0.82 9.70 -39.59 -0.38 -1.21 16
5 C -0.11 -1.05 5.25 -104.63 -0.55 -1.60 16
6 C 0.18 2.02 5.80 -5.20 -0.03 1.99 16
7 N -0.75 -9.37 5.55 -66.41 -0.37 -9.74 16
8 C 0.71 11.70 8.55 -86.91 -0.74 10.95 16
9 O -0.59 -11.67 16.00 5.29 0.08 -11.58 16
10 N -0.72 -12.42 5.00 -59.81 -0.30 -12.72 16
11 C 0.15 2.93 2.37 -69.08 -0.16 2.77 16
12 H 0.10 2.01 5.72 -51.93 -0.30 1.72 16
13 C -0.11 -1.95 4.44 -26.73 -0.12 -2.07 16
14 C -0.11 -1.90 2.45 -90.62 -0.22 -2.12 16
15 C -0.15 -2.36 8.82 37.16 0.33 -2.03 16
16 C -0.14 -2.02 9.19 37.16 0.34 -1.68 16
17 C 0.43 10.19 6.68 -10.99 -0.07 10.11 16
18 O -0.60 -15.48 15.54 5.55 0.09 -15.39 16
19 N -0.55 -13.76 4.28 -10.96 -0.05 -13.80 16
20 C -0.31 -8.34 9.68 -14.93 -0.14 -8.48 16
21 H 0.10 2.93 7.17 -52.48 -0.38 2.56 16
22 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16
23 N -0.89 -23.74 13.05 55.50 0.72 -23.02 16
24 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16
25 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16
26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16
28 C -0.09 -0.85 9.70 -39.58 -0.38 -1.24 16
29 C -0.12 -1.01 9.70 -39.58 -0.38 -1.40 16
30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
31 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16
32 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16
33 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16
34 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16
35 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16
36 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16
37 H 0.40 4.31 8.48 -40.82 -0.35 3.96 16
38 H 0.40 6.68 7.83 -40.82 -0.32 6.36 16
39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
40 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16
41 H 0.09 1.83 5.25 -51.93 -0.27 1.56 16
42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
44 H 0.06 0.99 6.35 -51.93 -0.33 0.66 16
45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
48 H 0.40 9.62 5.95 -40.82 -0.24 9.37 16
49 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16
50 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16
51 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16
LS Contribution 418.48 15.07 6.31 6.31
Total: -1.00 -31.47 418.48 -9.87 -41.34
By element:
Atomic # 1 Polarization: 29.36 SS G_CDS: -8.07 Total: 21.29 kcal
Atomic # 6 Polarization: 4.93 SS G_CDS: -3.26 Total: 1.67 kcal
Atomic # 7 Polarization: -59.29 SS G_CDS: 0.01 Total: -59.28 kcal
Atomic # 8 Polarization: -27.15 SS G_CDS: 0.17 Total: -26.97 kcal
Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal
Total LS contribution 6.31 Total: 6.31 kcal
Total: -31.47 -9.87 -41.34 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000126800618.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.893 kcal
(2) G-P(sol) polarization free energy of solvation -31.469 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.362 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.233 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.37 seconds