Wall clock time and date at job start Wed Apr 1 2020 04:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 120.00273 * 2 1 4 4 C 1.38231 * 120.00194 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.00149 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00360 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.47168 * 90.00241 * 6 5 4 8 8 C 1.34778 * 119.99974 * 180.02562 * 7 6 5 9 9 O 1.21583 * 120.00062 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99704 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99734 * 174.98012 * 10 8 7 12 12 H 1.09000 * 109.47350 * 328.72138 * 11 10 8 13 13 C 1.53002 * 109.46931 * 88.71490 * 11 10 8 14 14 C 1.52999 * 109.47133 * 185.26733 * 13 11 10 15 15 C 1.52999 * 109.47130 * 66.76185 * 14 13 11 16 16 C 1.53007 * 109.47318 * 186.75772 * 14 13 11 17 17 C 1.50695 * 109.47312 * 208.71340 * 11 10 8 18 18 O 1.21289 * 119.99972 * 340.89978 * 17 11 10 19 19 N 1.34774 * 120.00326 * 160.89346 * 17 11 10 20 20 C 1.37092 * 120.00430 * 184.86980 * 19 17 11 21 21 H 1.08004 * 120.00347 * 359.97438 * 20 19 17 22 22 C 1.38957 * 120.00442 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99271 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00251 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46715 * 60.00306 * 24 22 20 26 26 H 1.48497 * 109.46846 * 179.97438 * 24 22 20 27 27 H 1.48490 * 109.47133 * 300.00229 * 24 22 20 28 28 C 1.38240 * 119.99687 * 0.25987 * 5 4 3 29 29 C 1.38236 * 120.00086 * 359.46817 * 28 5 4 30 30 H 1.09001 * 109.47496 * 89.99272 * 1 2 3 31 31 H 1.09000 * 109.47257 * 209.99617 * 1 2 3 32 32 H 1.09000 * 109.47024 * 329.99721 * 1 2 3 33 33 H 1.08008 * 119.99874 * 359.97438 * 3 2 1 34 34 H 1.08005 * 119.99847 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.47501 * 210.00156 * 6 5 4 36 36 H 1.09000 * 109.46872 * 330.00490 * 6 5 4 37 37 H 0.96996 * 120.00132 * 359.97438 * 7 6 5 38 38 H 0.96998 * 119.99965 * 354.97984 * 10 8 7 39 39 H 1.09004 * 109.47632 * 305.27189 * 13 11 10 40 40 H 1.09010 * 109.47259 * 65.27292 * 13 11 10 41 41 H 1.09000 * 109.47648 * 306.75489 * 14 13 11 42 42 H 1.09000 * 109.47438 * 64.14452 * 15 14 13 43 43 H 1.09004 * 109.47534 * 184.15224 * 15 14 13 44 44 H 1.08998 * 109.46527 * 304.14683 * 15 14 13 45 45 H 1.09004 * 109.46795 * 60.00165 * 16 14 13 46 46 H 1.08991 * 109.47015 * 180.02562 * 16 14 13 47 47 H 1.09003 * 109.46941 * 300.00682 * 16 14 13 48 48 H 0.96999 * 119.99555 * 4.87384 * 19 17 11 49 49 H 0.97007 * 119.99154 * 180.02562 * 23 22 20 50 50 H 1.08001 * 119.99858 * 179.73219 * 28 5 4 51 51 H 1.08002 * 120.00386 * 180.28176 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 -0.0001 -0.0017 7 7 6.2681 0.0004 1.3791 8 6 7.5934 0.0010 1.6244 9 8 8.3827 0.0006 0.6996 10 7 8.0436 0.0020 2.8948 11 6 9.4795 -0.1084 3.1630 12 1 9.9501 -0.7063 2.3825 13 6 10.1038 1.2883 3.1815 14 6 11.6216 1.1667 3.3305 15 6 12.2072 0.5200 2.0736 16 6 12.2289 2.5585 3.5181 17 6 9.6914 -0.7709 4.4999 18 8 8.7890 -0.8049 5.3096 19 7 10.8834 -1.3259 4.7957 20 6 11.0463 -2.0152 5.9694 21 1 10.2196 -2.1132 6.6574 22 6 12.2755 -2.5869 6.2747 23 7 13.2819 -2.4663 5.4383 24 14 12.4977 -3.5255 7.8744 25 1 11.5508 -4.6688 7.9130 26 1 13.8903 -4.0336 7.9608 27 1 12.2283 -2.6207 9.0206 28 6 3.5805 -1.1972 -0.0054 29 6 2.1981 -1.1972 0.0008 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6582 2.1325 -0.0004 34 1 4.1205 2.1324 -0.0010 35 1 6.1416 -0.8904 -0.5155 36 1 6.1416 0.8897 -0.5161 37 1 5.6384 0.0011 2.1169 38 1 7.4168 0.0758 3.6313 39 1 9.8702 1.8031 2.2494 40 1 9.7006 1.8555 4.0206 41 1 11.8532 0.5494 4.1984 42 1 12.0399 1.1732 1.2172 43 1 13.2778 0.3659 2.2094 44 1 11.7213 -0.4399 1.8989 45 1 11.8117 3.0193 4.4135 46 1 13.3102 2.4718 3.6237 47 1 11.9972 3.1760 2.6501 48 1 11.6261 -1.2375 4.1780 49 1 14.1399 -2.8657 5.6512 50 1 4.1205 -2.1325 -0.0098 51 1 1.6581 -2.1325 0.0016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126800618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:56 Heat of formation + Delta-G solvation = -64.232970 kcal Electronic energy + Delta-G solvation = -30229.989817 eV Core-core repulsion = 26128.357687 eV Total energy + Delta-G solvation = -4101.632131 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -40.19799 -39.59812 -38.47510 -35.99975 -35.20419 -34.36859 -33.47899 -32.68031 -31.28015 -31.22116 -29.36984 -27.96818 -26.75135 -25.28502 -24.78098 -23.22525 -23.00920 -21.07358 -20.64536 -20.01695 -19.14071 -18.48159 -17.83296 -16.63046 -15.97398 -15.88568 -15.62937 -15.25707 -15.19746 -14.83312 -14.62117 -14.38176 -14.06356 -13.85992 -13.74459 -13.69836 -13.60972 -13.12107 -13.06238 -12.92535 -12.84490 -12.35162 -12.24721 -12.00453 -11.75839 -11.62554 -11.53219 -11.33700 -11.27444 -11.23165 -11.08455 -10.61683 -10.50431 -10.32566 -10.27485 -10.10694 -9.95939 -9.52661 -9.21802 -9.11453 -8.88577 -8.70984 -8.30521 -8.02842 -6.46771 -3.88347 0.92536 1.12151 2.86976 3.16385 3.23557 3.27477 3.43892 3.52634 3.81118 4.13038 4.41330 4.50821 4.53146 4.63210 4.73887 4.86953 4.90713 5.16933 5.17242 5.22749 5.30429 5.34455 5.36185 5.42616 5.44083 5.48899 5.58132 5.69989 5.79921 5.80882 5.93904 5.98065 6.09084 6.10009 6.16392 6.18374 6.27587 6.28895 6.34260 6.36644 6.41492 6.51679 6.59444 6.70279 6.76624 6.86634 6.90796 7.16336 7.49946 7.97331 8.28476 8.51101 8.84940 9.09528 9.44971 9.93444 10.69819 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.002193 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.821871 B =12766.786865 C =14126.441705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.082 4.082 3 C -0.124 4.124 4 C -0.095 4.095 5 C -0.111 4.111 6 C 0.183 3.817 7 N -0.746 5.746 8 C 0.705 3.295 9 O -0.594 6.594 10 N -0.721 5.721 11 C 0.152 3.848 12 H 0.100 0.900 13 C -0.113 4.113 14 C -0.112 4.112 15 C -0.146 4.146 16 C -0.139 4.139 17 C 0.434 3.566 18 O -0.596 6.596 19 N -0.550 5.550 20 C -0.306 4.306 21 H 0.104 0.896 22 C 0.026 3.974 23 N -0.894 5.894 24 Si 0.932 3.068 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.094 4.094 29 C -0.124 4.124 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.397 0.603 38 H 0.404 0.596 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.397 0.603 49 H 0.274 0.726 50 H 0.125 0.875 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.303 7.290 -11.843 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.082 4.082 3 C -0.142 4.142 4 C -0.114 4.114 5 C -0.112 4.112 6 C 0.059 3.941 7 N -0.402 5.402 8 C 0.405 3.595 9 O -0.473 6.473 10 N -0.376 5.376 11 C 0.043 3.957 12 H 0.118 0.882 13 C -0.153 4.153 14 C -0.131 4.131 15 C -0.203 4.203 16 C -0.196 4.196 17 C 0.220 3.780 18 O -0.482 6.482 19 N -0.187 5.187 20 C -0.435 4.435 21 H 0.121 0.879 22 C -0.177 4.177 23 N -0.534 5.534 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.198 1.198 28 C -0.113 4.113 29 C -0.142 4.142 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.231 0.769 38 H 0.240 0.760 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.233 0.767 49 H 0.084 0.916 50 H 0.143 0.857 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.929 7.137 -12.151 22.027 hybrid contribution 0.007 -0.437 1.116 1.199 sum -16.922 6.700 -11.035 21.284 Atomic orbital electron populations 1.20816 0.91203 1.02896 1.02361 1.19994 0.96144 0.93280 0.98794 1.21038 0.94113 0.97595 1.01489 1.21111 0.94141 0.97682 0.98453 1.19923 0.95076 0.93535 1.02643 1.19956 0.88298 1.03005 0.82862 1.45118 1.05499 1.81310 1.08303 1.15882 0.82243 0.77812 0.83549 1.90903 1.54768 1.58287 1.43325 1.44816 1.08436 1.78218 1.06115 1.20667 0.80220 0.97401 0.97445 0.88224 1.21900 0.95254 0.95867 1.02255 1.21336 0.93886 0.97728 1.00126 1.21860 1.00848 1.00648 0.96919 1.21751 1.00591 0.96317 1.00967 1.19819 0.84494 0.84925 0.88786 1.90486 1.43110 1.64151 1.50442 1.42045 1.10324 1.45995 1.20309 1.19680 0.97943 1.28597 0.97278 0.87865 1.25294 0.95051 0.97982 0.99356 1.69613 1.02617 1.44777 1.36379 0.85905 0.77253 0.79657 0.81344 1.19882 1.20890 1.19836 1.21145 0.94168 0.97784 0.98195 1.21056 0.94125 0.97636 1.01336 0.91113 0.91457 0.91487 0.85984 0.85752 0.90854 0.90902 0.76939 0.76007 0.91201 0.91734 0.89059 0.93033 0.92484 0.92463 0.93001 0.92675 0.93244 0.76670 0.91608 0.85660 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.08 -0.64 5.88 -104.62 -0.62 -1.26 16 3 C -0.12 -0.99 9.70 -39.59 -0.38 -1.37 16 4 C -0.10 -0.82 9.70 -39.59 -0.38 -1.21 16 5 C -0.11 -1.05 5.25 -104.63 -0.55 -1.60 16 6 C 0.18 2.02 5.80 -5.20 -0.03 1.99 16 7 N -0.75 -9.37 5.55 -66.41 -0.37 -9.74 16 8 C 0.71 11.70 8.55 -86.91 -0.74 10.95 16 9 O -0.59 -11.67 16.00 5.29 0.08 -11.58 16 10 N -0.72 -12.42 5.00 -59.81 -0.30 -12.72 16 11 C 0.15 2.93 2.37 -69.08 -0.16 2.77 16 12 H 0.10 2.01 5.72 -51.93 -0.30 1.72 16 13 C -0.11 -1.95 4.44 -26.73 -0.12 -2.07 16 14 C -0.11 -1.90 2.45 -90.62 -0.22 -2.12 16 15 C -0.15 -2.36 8.82 37.16 0.33 -2.03 16 16 C -0.14 -2.02 9.19 37.16 0.34 -1.68 16 17 C 0.43 10.19 6.68 -10.99 -0.07 10.11 16 18 O -0.60 -15.48 15.54 5.55 0.09 -15.39 16 19 N -0.55 -13.76 4.28 -10.96 -0.05 -13.80 16 20 C -0.31 -8.34 9.68 -14.93 -0.14 -8.48 16 21 H 0.10 2.93 7.17 -52.48 -0.38 2.56 16 22 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 23 N -0.89 -23.74 13.05 55.50 0.72 -23.02 16 24 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 C -0.09 -0.85 9.70 -39.58 -0.38 -1.24 16 29 C -0.12 -1.01 9.70 -39.58 -0.38 -1.40 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 33 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 35 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.40 4.31 8.48 -40.82 -0.35 3.96 16 38 H 0.40 6.68 7.83 -40.82 -0.32 6.36 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 41 H 0.09 1.83 5.25 -51.93 -0.27 1.56 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.99 6.35 -51.93 -0.33 0.66 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.40 9.62 5.95 -40.82 -0.24 9.37 16 49 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 50 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 51 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 418.48 15.07 6.31 6.31 Total: -1.00 -31.47 418.48 -9.87 -41.34 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -8.07 Total: 21.29 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -3.26 Total: 1.67 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.01 Total: -59.28 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: 0.17 Total: -26.97 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -31.47 -9.87 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126800618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.893 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds