Wall clock time and date at job start Wed Apr 1 2020 04:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 120.00273 * 2 1 4 4 C 1.38231 * 120.00194 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.00149 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00360 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.47168 * 90.00241 * 6 5 4 8 8 C 1.34778 * 119.99974 * 180.02562 * 7 6 5 9 9 O 1.21583 * 120.00062 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99704 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99734 * 174.98012 * 10 8 7 12 12 H 1.09000 * 109.47350 * 328.72138 * 11 10 8 13 13 C 1.53002 * 109.46931 * 88.71490 * 11 10 8 14 14 C 1.52999 * 109.47133 * 185.26733 * 13 11 10 15 15 C 1.52999 * 109.47130 * 66.76185 * 14 13 11 16 16 C 1.53007 * 109.47318 * 186.75772 * 14 13 11 17 17 C 1.50695 * 109.47312 * 208.71340 * 11 10 8 18 18 O 1.21289 * 119.99972 * 340.89978 * 17 11 10 19 19 N 1.34774 * 120.00326 * 160.89346 * 17 11 10 20 20 C 1.37092 * 120.00430 * 184.86980 * 19 17 11 21 21 H 1.08004 * 120.00347 * 359.97438 * 20 19 17 22 22 C 1.38957 * 120.00442 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99271 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00251 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46715 * 60.00306 * 24 22 20 26 26 H 1.48497 * 109.46846 * 179.97438 * 24 22 20 27 27 H 1.48490 * 109.47133 * 300.00229 * 24 22 20 28 28 C 1.38240 * 119.99687 * 0.25987 * 5 4 3 29 29 C 1.38236 * 120.00086 * 359.46817 * 28 5 4 30 30 H 1.09001 * 109.47496 * 89.99272 * 1 2 3 31 31 H 1.09000 * 109.47257 * 209.99617 * 1 2 3 32 32 H 1.09000 * 109.47024 * 329.99721 * 1 2 3 33 33 H 1.08008 * 119.99874 * 359.97438 * 3 2 1 34 34 H 1.08005 * 119.99847 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.47501 * 210.00156 * 6 5 4 36 36 H 1.09000 * 109.46872 * 330.00490 * 6 5 4 37 37 H 0.96996 * 120.00132 * 359.97438 * 7 6 5 38 38 H 0.96998 * 119.99965 * 354.97984 * 10 8 7 39 39 H 1.09004 * 109.47632 * 305.27189 * 13 11 10 40 40 H 1.09010 * 109.47259 * 65.27292 * 13 11 10 41 41 H 1.09000 * 109.47648 * 306.75489 * 14 13 11 42 42 H 1.09000 * 109.47438 * 64.14452 * 15 14 13 43 43 H 1.09004 * 109.47534 * 184.15224 * 15 14 13 44 44 H 1.08998 * 109.46527 * 304.14683 * 15 14 13 45 45 H 1.09004 * 109.46795 * 60.00165 * 16 14 13 46 46 H 1.08991 * 109.47015 * 180.02562 * 16 14 13 47 47 H 1.09003 * 109.46941 * 300.00682 * 16 14 13 48 48 H 0.96999 * 119.99555 * 4.87384 * 19 17 11 49 49 H 0.97007 * 119.99154 * 180.02562 * 23 22 20 50 50 H 1.08001 * 119.99858 * 179.73219 * 28 5 4 51 51 H 1.08002 * 120.00386 * 180.28176 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 -0.0001 -0.0017 7 7 6.2681 0.0004 1.3791 8 6 7.5934 0.0010 1.6244 9 8 8.3827 0.0006 0.6996 10 7 8.0436 0.0020 2.8948 11 6 9.4795 -0.1084 3.1630 12 1 9.9501 -0.7063 2.3825 13 6 10.1038 1.2883 3.1815 14 6 11.6216 1.1667 3.3305 15 6 12.2072 0.5200 2.0736 16 6 12.2289 2.5585 3.5181 17 6 9.6914 -0.7709 4.4999 18 8 8.7890 -0.8049 5.3096 19 7 10.8834 -1.3259 4.7957 20 6 11.0463 -2.0152 5.9694 21 1 10.2196 -2.1132 6.6574 22 6 12.2755 -2.5869 6.2747 23 7 13.2819 -2.4663 5.4383 24 14 12.4977 -3.5255 7.8744 25 1 11.5508 -4.6688 7.9130 26 1 13.8903 -4.0336 7.9608 27 1 12.2283 -2.6207 9.0206 28 6 3.5805 -1.1972 -0.0054 29 6 2.1981 -1.1972 0.0008 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6582 2.1325 -0.0004 34 1 4.1205 2.1324 -0.0010 35 1 6.1416 -0.8904 -0.5155 36 1 6.1416 0.8897 -0.5161 37 1 5.6384 0.0011 2.1169 38 1 7.4168 0.0758 3.6313 39 1 9.8702 1.8031 2.2494 40 1 9.7006 1.8555 4.0206 41 1 11.8532 0.5494 4.1984 42 1 12.0399 1.1732 1.2172 43 1 13.2778 0.3659 2.2094 44 1 11.7213 -0.4399 1.8989 45 1 11.8117 3.0193 4.4135 46 1 13.3102 2.4718 3.6237 47 1 11.9972 3.1760 2.6501 48 1 11.6261 -1.2375 4.1780 49 1 14.1399 -2.8657 5.6512 50 1 4.1205 -2.1325 -0.0098 51 1 1.6581 -2.1325 0.0016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126800618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:54 Heat of formation + Delta-G solvation = -83.287050 kcal Electronic energy + Delta-G solvation = -30230.816064 eV Core-core repulsion = 26128.357687 eV Total energy + Delta-G solvation = -4102.458378 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.53901 -40.55795 -39.96559 -37.51195 -36.36011 -36.07594 -35.06417 -33.51617 -33.26935 -31.84731 -30.63032 -28.86919 -28.02322 -27.18163 -25.69582 -24.66563 -23.63970 -22.02977 -21.75037 -21.52539 -20.86481 -19.90383 -19.61183 -17.80937 -17.45684 -16.94543 -16.70429 -16.64918 -16.35620 -16.00133 -15.92256 -15.86700 -15.43806 -15.15483 -15.10763 -14.71032 -14.61195 -14.49599 -14.32150 -13.85622 -13.57140 -13.54766 -13.43014 -13.17274 -12.95777 -12.91582 -12.89573 -12.83910 -12.60136 -12.44870 -12.13796 -11.99999 -11.97707 -11.85674 -11.69259 -11.63716 -11.40807 -11.32160 -10.57451 -10.27769 -10.04392 -9.85601 -9.78458 -9.53772 -8.48100 -5.97892 0.24569 0.48471 1.37313 1.41974 1.52304 1.64533 1.94172 2.12506 2.29449 2.79327 3.08367 3.17708 3.35214 3.67315 3.88941 3.91255 3.97959 4.05874 4.07708 4.13388 4.18936 4.25594 4.27770 4.52665 4.54802 4.66527 4.66961 4.78070 4.81016 4.85055 4.86602 4.88039 4.95084 4.96189 5.03055 5.08733 5.17971 5.27587 5.32102 5.37286 5.39957 5.42880 5.46031 5.47281 5.52204 5.65397 5.69479 5.91778 5.97397 6.08456 6.51401 7.02341 7.05895 7.45413 7.53939 7.97845 8.68084 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.002193 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.821871 B =12766.786865 C =14126.441705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.130 4.130 4 C -0.100 4.100 5 C -0.121 4.121 6 C 0.186 3.814 7 N -0.729 5.729 8 C 0.705 3.295 9 O -0.625 6.625 10 N -0.721 5.721 11 C 0.164 3.836 12 H 0.092 0.908 13 C -0.102 4.102 14 C -0.111 4.111 15 C -0.141 4.141 16 C -0.134 4.134 17 C 0.435 3.565 18 O -0.624 6.624 19 N -0.556 5.556 20 C -0.339 4.339 21 H 0.084 0.916 22 C -0.009 4.009 23 N -0.912 5.912 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.270 1.270 28 C -0.105 4.105 29 C -0.132 4.132 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.133 0.867 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.407 0.593 38 H 0.408 0.592 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.039 0.961 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.400 0.600 49 H 0.280 0.720 50 H 0.126 0.874 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.380 8.034 -12.179 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.119 4.119 5 C -0.121 4.121 6 C 0.063 3.937 7 N -0.385 5.385 8 C 0.405 3.595 9 O -0.506 6.506 10 N -0.376 5.376 11 C 0.055 3.945 12 H 0.109 0.891 13 C -0.141 4.141 14 C -0.131 4.131 15 C -0.198 4.198 16 C -0.191 4.191 17 C 0.221 3.779 18 O -0.512 6.512 19 N -0.193 5.193 20 C -0.468 4.468 21 H 0.102 0.898 22 C -0.210 4.210 23 N -0.551 5.551 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.195 1.195 28 C -0.123 4.123 29 C -0.150 4.150 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.242 0.758 38 H 0.244 0.756 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.236 0.764 49 H 0.089 0.911 50 H 0.144 0.856 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.041 7.890 -12.504 23.326 hybrid contribution 0.249 -0.665 1.168 1.367 sum -17.792 7.225 -11.336 22.300 Atomic orbital electron populations 1.20865 0.89480 1.03678 1.03174 1.20344 0.97532 0.93062 0.97634 1.21311 0.93915 0.98582 1.00978 1.21263 0.94722 0.97655 0.98251 1.19770 0.93858 0.94227 1.04275 1.19987 0.89583 1.02564 0.81615 1.45059 1.04150 1.79747 1.09530 1.15971 0.83219 0.77603 0.82720 1.90879 1.55926 1.59754 1.44002 1.44737 1.07624 1.78567 1.06681 1.20450 0.81688 0.98115 0.94295 0.89060 1.21825 0.95298 0.94284 1.02717 1.21296 0.93887 0.98841 0.99049 1.21816 1.00761 1.00076 0.97152 1.21714 1.00718 0.94789 1.01927 1.20513 0.83547 0.83910 0.89889 1.90454 1.43817 1.65021 1.51871 1.42092 1.10985 1.46241 1.19978 1.19697 0.98191 1.30663 0.98296 0.89792 1.26092 0.94316 0.98224 1.02392 1.69683 1.02932 1.44891 1.37620 0.84970 0.77645 0.78252 0.77370 1.19679 1.19537 1.19517 1.21259 0.94819 0.97733 0.98527 1.21292 0.93867 0.98665 1.01162 0.90181 0.90840 0.90602 0.84101 0.84946 0.91669 0.90945 0.75758 0.75565 0.89999 0.91803 0.92388 0.91336 0.92166 0.94154 0.92932 0.92145 0.91251 0.76401 0.91093 0.85600 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.01 71.24 0.71 -0.29 16 2 C -0.09 -1.18 5.88 -19.87 -0.12 -1.30 16 3 C -0.13 -1.82 9.70 22.27 0.22 -1.60 16 4 C -0.10 -1.61 9.70 22.27 0.22 -1.39 16 5 C -0.12 -2.20 5.25 -19.87 -0.10 -2.30 16 6 C 0.19 4.04 5.80 85.63 0.50 4.54 16 7 N -0.73 -17.98 5.55 -482.30 -2.68 -20.66 16 8 C 0.71 23.25 8.55 179.05 1.53 24.78 16 9 O -0.62 -24.48 16.00 -3.98 -0.06 -24.54 16 10 N -0.72 -24.90 5.00 -461.42 -2.31 -27.20 16 11 C 0.16 6.43 2.37 44.24 0.11 6.53 16 12 H 0.09 3.77 5.72 -2.39 -0.01 3.76 16 13 C -0.10 -3.48 4.44 30.59 0.14 -3.34 16 14 C -0.11 -3.76 2.45 -10.79 -0.03 -3.79 16 15 C -0.14 -4.51 8.82 71.98 0.64 -3.88 16 16 C -0.13 -3.71 9.19 71.98 0.66 -3.05 16 17 C 0.43 20.95 6.68 87.66 0.59 21.54 16 18 O -0.62 -33.25 15.54 -3.06 -0.05 -33.30 16 19 N -0.56 -28.71 4.28 -306.99 -1.31 -30.03 16 20 C -0.34 -19.01 9.68 84.04 0.81 -18.20 16 21 H 0.08 4.94 7.17 -2.91 -0.02 4.92 16 22 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 23 N -0.91 -48.65 13.05 21.67 0.28 -48.37 16 24 Si 0.99 42.29 29.55 68.60 2.03 44.32 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 C -0.10 -1.82 9.70 22.27 0.22 -1.61 16 29 C -0.13 -1.99 9.70 22.27 0.22 -1.77 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 32 H 0.08 0.53 8.09 -2.39 -0.02 0.52 16 33 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.06 1.53 8.08 -2.38 -0.02 1.52 16 36 H 0.07 1.60 8.09 -2.39 -0.02 1.58 16 37 H 0.41 8.54 8.48 -92.71 -0.79 7.75 16 38 H 0.41 13.51 7.83 -92.71 -0.73 12.79 16 39 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 40 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 41 H 0.06 2.38 5.25 -2.39 -0.01 2.37 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.04 1.41 6.35 -2.39 -0.02 1.39 16 45 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.40 20.02 5.95 -92.71 -0.55 19.47 16 49 H 0.28 13.98 8.31 -92.70 -0.77 13.21 16 50 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 51 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -67.70 418.48 1.56 -66.14 By element: Atomic # 1 Polarization: 59.89 SS G_CDS: -1.10 Total: 58.78 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.76 Total: 14.85 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -6.01 Total: -126.26 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: -0.11 Total: -57.84 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -67.70 1.56 -66.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126800618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.146 kcal (2) G-P(sol) polarization free energy of solvation -67.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds