Wall clock time and date at job start Wed Apr 1 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38284 * 119.92495 * 2 1 4 4 C 1.38110 * 120.06769 * 179.97438 * 3 2 1 5 5 C 1.38871 * 119.93044 * 359.97438 * 4 3 2 6 6 N 1.39931 * 120.06645 * 179.97438 * 5 4 3 7 7 C 1.34767 * 120.00398 * 35.08820 * 6 5 4 8 8 O 1.21289 * 119.99789 * 355.37030 * 7 6 5 9 9 C 1.50700 * 120.00098 * 175.37541 * 7 6 5 10 10 N 1.46505 * 109.46957 * 179.97438 * 9 7 6 11 11 C 1.46498 * 119.99641 * 269.99653 * 10 9 7 12 12 C 1.34778 * 120.00047 * 89.99920 * 10 9 7 13 13 O 1.21278 * 119.99806 * 0.02562 * 12 10 9 14 14 C 1.50695 * 119.99667 * 179.97438 * 12 10 9 15 15 N 1.46907 * 109.46975 * 180.02562 * 14 12 10 16 16 C 1.46904 * 110.99763 * 66.04787 * 15 14 12 17 17 C 1.46903 * 111.00012 * 190.00027 * 15 14 12 18 18 H 1.08999 * 109.47063 * 55.00472 * 17 15 14 19 19 C 1.53003 * 109.46969 * 294.99977 * 17 15 14 20 20 C 1.50698 * 109.46860 * 174.99860 * 17 15 14 21 21 H 1.08006 * 120.00144 * 0.02562 * 20 17 15 22 22 C 1.37872 * 119.99891 * 179.97438 * 20 17 15 23 23 N 1.31516 * 120.00254 * 0.02562 * 22 20 17 24 24 Si 1.86804 * 120.00262 * 180.02562 * 22 20 17 25 25 H 1.48494 * 109.47379 * 179.97438 * 24 22 20 26 26 H 1.48495 * 109.46991 * 300.00555 * 24 22 20 27 27 H 1.48504 * 109.46875 * 59.99877 * 24 22 20 28 28 C 1.38867 * 119.85929 * 0.25304 * 5 4 3 29 29 C 1.38114 * 119.92706 * 359.51708 * 28 5 4 30 30 H 1.08997 * 109.46932 * 90.00747 * 1 2 3 31 31 H 1.09005 * 109.46966 * 209.99761 * 1 2 3 32 32 H 1.08997 * 109.47584 * 330.00183 * 1 2 3 33 33 H 1.07998 * 119.96282 * 359.97256 * 3 2 1 34 34 H 1.08007 * 120.03440 * 179.97438 * 4 3 2 35 35 H 0.97007 * 119.99264 * 215.08417 * 6 5 4 36 36 H 1.08998 * 109.47138 * 59.99602 * 9 7 6 37 37 H 1.08999 * 109.47153 * 299.99434 * 9 7 6 38 38 H 1.09003 * 109.47125 * 269.99737 * 11 10 9 39 39 H 1.08999 * 109.47236 * 30.00476 * 11 10 9 40 40 H 1.09005 * 109.46969 * 150.00422 * 11 10 9 41 41 H 1.08999 * 109.47730 * 60.00191 * 14 12 10 42 42 H 1.09003 * 109.47698 * 299.99536 * 14 12 10 43 43 H 1.09001 * 109.46852 * 183.95650 * 16 15 14 44 44 H 1.09003 * 109.47151 * 303.95564 * 16 15 14 45 45 H 1.08993 * 109.47280 * 63.95365 * 16 15 14 46 46 H 1.08997 * 109.46859 * 60.00391 * 19 17 15 47 47 H 1.08997 * 109.46610 * 180.02562 * 19 17 15 48 48 H 1.08997 * 109.46943 * 299.99902 * 19 17 15 49 49 H 0.96995 * 120.00513 * 179.97438 * 23 22 20 50 50 H 1.08005 * 120.03592 * 179.74758 * 28 5 4 51 51 H 1.07997 * 119.96178 * 180.23069 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 0.0005 5 6 4.2739 0.0001 0.0016 6 7 5.6732 0.0003 0.0016 7 6 6.3470 0.9560 0.6716 8 8 5.7434 1.8632 1.2043 9 6 7.8503 0.8974 0.7590 10 7 8.3394 2.0408 1.5335 11 6 8.6724 3.2960 0.8556 12 6 8.4829 1.9378 2.8697 13 8 8.2076 0.8984 3.4307 14 6 8.9865 3.1137 3.6662 15 7 9.0538 2.7494 5.0878 16 6 10.0677 1.7116 5.3178 17 6 9.3109 3.9307 5.9223 18 1 8.5564 4.6906 5.7187 19 6 10.6982 4.4902 5.6007 20 6 9.2512 3.5408 7.3768 21 1 9.0435 2.5176 7.6535 22 6 9.4628 4.4899 8.3542 23 7 9.7162 5.7357 8.0172 24 14 9.3896 4.0065 10.1571 25 1 9.6506 5.2003 11.0007 26 1 8.0433 3.4635 10.4697 27 1 10.4174 2.9710 10.4340 28 6 3.5781 -1.2017 -0.0032 29 6 2.1970 -1.1983 0.0011 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6551 2.1327 -0.0004 34 1 4.1163 2.1383 0.0001 35 1 6.1582 -0.6876 -0.4807 36 1 8.2742 0.9309 -0.2447 37 1 8.1500 -0.0288 1.2492 38 1 9.7211 3.2815 0.5586 39 1 8.0457 3.4086 -0.0291 40 1 8.4983 4.1321 1.5330 41 1 8.3074 3.9567 3.5386 42 1 9.9804 3.3915 3.3153 43 1 10.0482 1.4104 6.3652 44 1 9.8535 0.8484 4.6875 45 1 11.0535 2.1057 5.0714 46 1 10.7412 4.7722 4.5488 47 1 10.8891 5.3664 6.2203 48 1 11.4525 3.7303 5.8044 49 1 9.8647 6.4035 8.7048 50 1 4.1165 -2.1380 -0.0065 51 1 1.6554 -2.1326 0.0012 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161945897.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:46 Heat of formation + Delta-G solvation = -42.653427 kcal Electronic energy + Delta-G solvation = -30453.138300 eV Core-core repulsion = 26352.441929 eV Total energy + Delta-G solvation = -4100.696371 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.80367 -40.88807 -39.57818 -38.41241 -36.52689 -36.02876 -34.71231 -32.75977 -31.89185 -31.30937 -30.19750 -28.76058 -27.52984 -27.23560 -26.68542 -25.35922 -23.99641 -22.78510 -21.71661 -21.25358 -20.11207 -18.91341 -18.46618 -18.30490 -18.02159 -17.04750 -16.86488 -16.59057 -16.47102 -16.30502 -15.85809 -15.57650 -15.42632 -15.12089 -14.78142 -14.59813 -14.57176 -14.38077 -14.23654 -14.10411 -13.83837 -13.47629 -13.38030 -13.23906 -13.01077 -12.91674 -12.85718 -12.76109 -12.62997 -12.57971 -12.48330 -12.24109 -12.06076 -12.02251 -11.89418 -11.31773 -11.01709 -10.99508 -10.69191 -10.49383 -9.90156 -9.72733 -8.99006 -8.84256 -8.11664 -6.21545 0.26542 0.44807 1.40410 1.41456 1.43463 1.51045 1.56320 1.83003 2.23018 2.43365 2.82726 3.17224 3.39517 3.62947 3.67991 3.94949 4.01638 4.11483 4.18239 4.22975 4.32961 4.35445 4.40598 4.42135 4.48227 4.59707 4.62232 4.70177 4.74155 4.83578 4.84215 4.85924 4.90684 4.93230 5.07593 5.11302 5.13578 5.21287 5.33170 5.38279 5.42952 5.52225 5.53904 5.69087 5.69795 5.79504 6.09248 6.13504 6.23859 6.38929 6.46337 6.69738 6.89802 7.09013 7.20311 7.46891 8.94353 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.002192 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.027630 B =12771.108868 C =13892.695254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C -0.119 4.119 4 C -0.141 4.141 5 C 0.121 3.879 6 N -0.659 5.659 7 C 0.490 3.510 8 O -0.556 6.556 9 C 0.102 3.898 10 N -0.603 5.603 11 C 0.076 3.924 12 C 0.522 3.478 13 O -0.558 6.558 14 C 0.043 3.957 15 N -0.542 5.542 16 C 0.045 3.955 17 C 0.216 3.784 18 H 0.008 0.992 19 C -0.157 4.157 20 C -0.518 4.518 21 H 0.049 0.951 22 C 0.013 3.987 23 N -0.917 5.917 24 Si 0.958 3.042 25 H -0.280 1.280 26 H -0.278 1.278 27 H -0.271 1.271 28 C -0.142 4.142 29 C -0.107 4.107 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.430 0.570 36 H 0.163 0.837 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.022 0.978 46 H 0.035 0.965 47 H 0.064 0.936 48 H 0.033 0.967 49 H 0.262 0.738 50 H 0.151 0.849 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.499 -12.614 -26.434 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.111 4.111 3 C -0.137 4.137 4 C -0.161 4.161 5 C 0.027 3.973 6 N -0.307 5.307 7 C 0.278 3.722 8 O -0.432 6.432 9 C -0.024 4.024 10 N -0.337 5.337 11 C -0.066 4.066 12 C 0.311 3.689 13 O -0.436 6.436 14 C -0.088 4.088 15 N -0.266 5.266 16 C -0.103 4.103 17 C 0.109 3.891 18 H 0.026 0.974 19 C -0.217 4.217 20 C -0.556 4.556 21 H 0.068 0.932 22 C -0.185 4.185 23 N -0.557 5.557 24 Si 0.784 3.216 25 H -0.205 1.205 26 H -0.204 1.204 27 H -0.196 1.196 28 C -0.162 4.162 29 C -0.125 4.125 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.134 0.866 35 H 0.269 0.731 36 H 0.181 0.819 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.085 0.915 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.040 0.960 46 H 0.054 0.946 47 H 0.083 0.917 48 H 0.052 0.948 49 H 0.072 0.928 50 H 0.169 0.831 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.397 -12.508 -25.515 29.929 hybrid contribution 0.845 0.404 0.858 1.270 sum -8.552 -12.104 -24.657 28.768 Atomic orbital electron populations 1.20809 0.89312 1.03421 1.03175 1.20281 0.97679 0.92866 1.00305 1.21152 0.93360 0.98832 1.00377 1.21277 0.94995 0.97756 1.02081 1.17969 0.83241 0.94408 1.01696 1.43365 1.04342 1.31257 1.51767 1.22098 0.92221 0.81227 0.76686 1.90733 1.70693 1.35657 1.46136 1.21503 0.87981 0.92149 1.00773 1.47540 1.65082 1.15105 1.05953 1.22067 1.02414 0.83853 0.98277 1.20851 0.76538 0.89265 0.82279 1.90609 1.50855 1.31875 1.70240 1.21930 1.01441 0.95609 0.89835 1.61903 1.49180 1.12045 1.03476 1.22199 0.91939 0.94692 1.01500 1.19117 0.92160 0.86445 0.91346 0.97437 1.22186 0.99323 1.01792 0.98349 1.21311 1.47614 0.95258 0.91466 0.93230 1.25640 0.94982 0.94921 1.02984 1.69979 1.49316 1.02109 1.34261 0.85616 0.78493 0.77653 0.79872 1.20500 1.20379 1.19625 1.21216 0.95022 0.96702 1.03233 1.21205 0.93422 0.98563 0.99337 0.89961 0.90417 0.91573 0.85238 0.86627 0.73113 0.81927 0.86471 0.89361 0.89438 0.91544 0.88842 0.90542 0.93145 0.91447 0.95953 0.94598 0.91723 0.94847 0.92846 0.83134 0.83060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.01 71.24 0.71 -0.62 16 2 C -0.11 -1.98 5.88 -19.84 -0.12 -2.10 16 3 C -0.12 -2.60 9.69 22.25 0.22 -2.38 16 4 C -0.14 -3.59 8.70 22.39 0.19 -3.39 16 5 C 0.12 2.63 6.30 38.15 0.24 2.87 16 6 N -0.66 -11.54 5.34 -303.51 -1.62 -13.16 16 7 C 0.49 11.63 7.74 87.66 0.68 12.31 16 8 O -0.56 -19.14 13.87 -3.06 -0.04 -19.18 16 9 C 0.10 1.81 5.89 85.63 0.50 2.31 16 10 N -0.60 -14.74 2.36 -851.13 -2.01 -16.75 16 11 C 0.08 1.29 10.24 127.77 1.31 2.60 16 12 C 0.52 18.32 7.37 87.66 0.65 18.97 16 13 O -0.56 -23.76 13.91 -3.02 -0.04 -23.80 16 14 C 0.04 1.61 3.44 85.55 0.29 1.90 16 15 N -0.54 -25.60 4.48 -906.01 -4.06 -29.66 16 16 C 0.04 1.96 8.53 127.69 1.09 3.05 16 17 C 0.22 11.43 2.34 44.17 0.10 11.53 16 18 H 0.01 0.45 8.03 -2.39 -0.02 0.43 16 19 C -0.16 -7.55 8.28 71.98 0.60 -6.96 16 20 C -0.52 -30.05 7.94 25.60 0.20 -29.85 16 21 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 22 C 0.01 0.76 5.30 84.65 0.45 1.21 16 23 N -0.92 -53.44 11.32 21.45 0.24 -53.20 16 24 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 25 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 28 C -0.14 -2.41 9.97 22.39 0.22 -2.19 16 29 C -0.11 -1.71 9.69 22.25 0.22 -1.49 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.75 8.08 -2.38 -0.02 0.73 16 32 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 33 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.12 3.40 6.22 -2.91 -0.02 3.38 16 35 H 0.43 3.56 8.82 -92.70 -0.82 2.74 16 36 H 0.16 1.04 8.07 -2.39 -0.02 1.02 16 37 H 0.12 2.14 7.42 -2.39 -0.02 2.12 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.17 8.07 -2.39 -0.02 1.15 16 40 H 0.07 1.32 6.44 -2.38 -0.02 1.31 16 41 H 0.09 3.51 7.26 -2.39 -0.02 3.49 16 42 H 0.08 2.49 6.90 -2.39 -0.02 2.48 16 43 H 0.05 2.39 6.53 -2.39 -0.02 2.37 16 44 H 0.07 2.83 5.82 -2.39 -0.01 2.82 16 45 H 0.02 0.91 6.28 -2.39 -0.02 0.89 16 46 H 0.04 1.46 6.75 -2.39 -0.02 1.45 16 47 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 48 H 0.03 1.55 6.39 -2.39 -0.02 1.54 16 49 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 50 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 51 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -82.80 406.21 2.19 -80.61 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.13 Total: 19.83 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 7.56 Total: 7.78 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -7.45 Total: -112.77 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.08 Total: -42.99 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -82.80 2.19 -80.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161945897.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.956 kcal (2) G-P(sol) polarization free energy of solvation -82.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds