Wall clock time and date at job start Wed Apr 1 2020 05:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34775 * 120.00363 * 2 1 4 4 O 1.21285 * 120.00056 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00345 * 180.02562 * 3 2 1 6 6 N 1.46894 * 109.47158 * 180.02562 * 5 3 2 7 7 C 1.46901 * 111.00419 * 66.04535 * 6 5 3 8 8 C 1.46898 * 111.00058 * 190.00089 * 6 5 3 9 9 H 1.09000 * 109.47198 * 54.99514 * 8 6 5 10 10 C 1.53007 * 109.47128 * 294.99927 * 8 6 5 11 11 C 1.50700 * 109.47670 * 174.99872 * 8 6 5 12 12 O 1.21290 * 119.99713 * 10.87437 * 11 8 6 13 13 N 1.34776 * 120.00368 * 190.87932 * 11 8 6 14 14 C 1.46496 * 119.99747 * 5.15493 * 13 11 8 15 15 C 1.50700 * 109.46909 * 265.00432 * 14 13 11 16 16 H 1.07998 * 120.00241 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00260 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99456 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00325 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.46901 * 60.00025 * 19 17 15 21 21 H 1.48498 * 109.46835 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46896 * 300.00199 * 19 17 15 23 23 C 1.39925 * 119.99639 * 185.15191 * 13 11 8 24 24 C 1.38877 * 120.06496 * 172.95970 * 23 13 11 25 25 C 1.38108 * 119.92801 * 180.02562 * 24 23 13 26 26 C 1.38283 * 120.07015 * 0.25721 * 25 24 23 27 27 C 1.50701 * 119.93177 * 179.72433 * 26 25 24 28 28 C 1.38280 * 120.14123 * 359.48809 * 26 25 24 29 29 C 1.38118 * 120.07041 * 0.50991 * 28 26 25 30 30 H 1.09001 * 109.47119 * 59.99718 * 1 2 3 31 31 H 1.09002 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46899 * 299.99634 * 1 2 3 33 33 H 0.97003 * 120.00140 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.47052 * 60.00247 * 5 3 2 35 35 H 1.09001 * 109.46985 * 300.00151 * 5 3 2 36 36 H 1.08994 * 109.47281 * 183.95376 * 7 6 5 37 37 H 1.09002 * 109.46600 * 303.95433 * 7 6 5 38 38 H 1.09003 * 109.46755 * 63.95396 * 7 6 5 39 39 H 1.08998 * 109.46442 * 298.42349 * 10 8 6 40 40 H 1.08998 * 109.46774 * 58.42580 * 10 8 6 41 41 H 1.09000 * 109.46985 * 178.42173 * 10 8 6 42 42 H 1.09002 * 109.47446 * 25.00734 * 14 13 11 43 43 H 1.09000 * 109.46881 * 145.01343 * 14 13 11 44 44 H 0.97001 * 120.00161 * 179.97438 * 18 17 15 45 45 H 1.08000 * 120.03548 * 359.97438 * 24 23 13 46 46 H 1.07999 * 119.96791 * 179.97438 * 25 24 23 47 47 H 1.08999 * 109.47221 * 89.99529 * 27 26 25 48 48 H 1.08999 * 109.47478 * 210.00049 * 27 26 25 49 49 H 1.09004 * 109.46563 * 329.99598 * 27 26 25 50 50 H 1.08005 * 119.96714 * 180.23846 * 28 26 25 51 51 H 1.08000 * 120.03830 * 179.76578 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 -0.0006 6 7 4.1356 2.5521 0.0002 7 6 3.7866 3.2333 1.2540 8 6 5.5843 2.5984 -0.2385 9 1 5.8172 2.0709 -1.1635 10 6 6.3149 1.9296 0.9276 11 6 6.0290 4.0337 -0.3531 12 8 5.2686 4.9299 -0.0537 13 7 7.2717 4.3215 -0.7884 14 6 8.1507 3.2473 -1.2569 15 6 9.0396 2.7967 -0.1265 16 1 8.9577 3.2634 0.8440 17 6 9.9577 1.7885 -0.3312 18 7 10.0578 1.2205 -1.5131 19 14 11.0590 1.2294 1.0702 20 1 10.2207 0.7295 2.1893 21 1 11.9510 0.1415 0.5948 22 1 11.8812 2.3732 1.5402 23 6 7.7220 5.6463 -0.7927 24 6 9.0461 5.9300 -1.1008 25 6 9.4877 7.2386 -1.1037 26 6 8.6143 8.2653 -0.7952 27 6 9.1010 9.6916 -0.7933 28 6 7.2940 7.9866 -0.4932 29 6 6.8461 6.6800 -0.4885 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.9500 -0.8401 -0.0004 34 1 4.0089 0.6535 -0.8909 35 1 4.0096 0.6531 0.8891 36 1 4.0988 4.2761 1.2000 37 1 2.7084 3.1841 1.4062 38 1 4.2937 2.7448 2.0861 39 1 6.1044 2.4739 1.8482 40 1 5.9728 0.8996 1.0280 41 1 7.3882 1.9390 0.7373 42 1 7.5469 2.4077 -1.6012 43 1 8.7658 3.6138 -2.0788 44 1 10.7039 0.5115 -1.6573 45 1 9.7300 5.1282 -1.3370 46 1 10.5174 7.4599 -1.3428 47 1 8.9692 10.1218 -1.7861 48 1 8.5289 10.2698 -0.0678 49 1 10.1572 9.7146 -0.5246 50 1 6.6133 8.7910 -0.2564 51 1 5.8157 6.4626 -0.2489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270672293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:41 Heat of formation + Delta-G solvation = -6.140688 kcal Electronic energy + Delta-G solvation = -31780.063764 eV Core-core repulsion = 27680.950704 eV Total energy + Delta-G solvation = -4099.113060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.54879 -39.66730 -38.30667 -36.50626 -35.48217 -34.58242 -32.95095 -31.71752 -30.28892 -30.22331 -28.62650 -27.66162 -26.26586 -26.15754 -24.82365 -23.47473 -22.41157 -21.79932 -20.68226 -20.16222 -18.64505 -17.31812 -17.06146 -16.70646 -16.30619 -15.92640 -15.64254 -15.06957 -14.93219 -14.74520 -14.43239 -14.34422 -14.08877 -13.60643 -13.48292 -13.38188 -13.21439 -12.97812 -12.85671 -12.74814 -12.58924 -12.45364 -12.03735 -12.00817 -11.87090 -11.81806 -11.43316 -11.20397 -11.15864 -11.02860 -10.96127 -10.72674 -10.68066 -10.47718 -10.28300 -10.02722 -9.72749 -9.21099 -9.10221 -8.73550 -8.44585 -8.28380 -7.89470 -7.07978 -6.35465 -4.42530 1.88474 2.07326 2.68906 2.99901 3.13675 3.19546 3.19875 3.27163 3.59400 4.17468 4.36237 4.49949 4.75130 4.95608 5.00642 5.07471 5.24483 5.33203 5.35752 5.36249 5.41004 5.56972 5.59587 5.61666 5.65626 5.72704 5.84536 5.88064 5.98570 6.02980 6.14557 6.18042 6.21754 6.28705 6.32645 6.39951 6.57653 6.73972 6.78030 6.91439 6.95884 7.04208 7.06803 7.19100 7.23224 7.32972 7.37431 7.46180 7.57158 7.81655 7.88386 8.14303 8.26438 8.60636 8.82265 9.22040 10.69422 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008432 B = 0.003820 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.803264 B = 7328.192154 C =10094.584382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.743 5.743 3 C 0.513 3.487 4 O -0.515 6.515 5 C 0.034 3.966 6 N -0.504 5.504 7 C -0.001 4.001 8 C 0.076 3.924 9 H 0.109 0.891 10 C -0.210 4.210 11 C 0.528 3.472 12 O -0.524 6.524 13 N -0.533 5.533 14 C 0.227 3.773 15 C -0.538 4.538 16 H 0.066 0.934 17 C 0.071 3.929 18 N -0.883 5.883 19 Si 0.894 3.106 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.167 3.833 24 C -0.139 4.139 25 C -0.105 4.105 26 C -0.132 4.132 27 C -0.104 4.104 28 C -0.108 4.108 29 C -0.177 4.177 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.401 0.599 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.016 0.984 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.131 0.869 42 H 0.048 0.952 43 H 0.045 0.955 44 H 0.269 0.731 45 H 0.140 0.860 46 H 0.115 0.885 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.113 0.887 51 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.773 -1.111 1.953 9.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.397 5.397 3 C 0.299 3.701 4 O -0.389 6.389 5 C -0.097 4.097 6 N -0.228 5.228 7 C -0.148 4.148 8 C -0.035 4.035 9 H 0.127 0.873 10 C -0.268 4.268 11 C 0.319 3.681 12 O -0.404 6.404 13 N -0.252 5.252 14 C 0.108 3.892 15 C -0.576 4.576 16 H 0.084 0.916 17 C -0.134 4.134 18 N -0.520 5.520 19 Si 0.721 3.279 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C 0.071 3.929 24 C -0.160 4.160 25 C -0.124 4.124 26 C -0.134 4.134 27 C -0.160 4.160 28 C -0.127 4.127 29 C -0.196 4.196 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.234 0.766 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.148 0.852 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.157 0.843 46 H 0.133 0.867 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.131 0.869 51 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.777 0.136 1.593 9.907 hybrid contribution 1.479 -1.529 1.301 2.493 sum -8.299 -1.393 2.894 8.898 Atomic orbital electron populations 1.21473 0.79840 1.01862 1.02228 1.45820 1.07607 1.08820 1.77473 1.20693 0.90179 0.83505 0.75737 1.90695 1.70094 1.30963 1.47177 1.21975 0.91732 0.92652 1.03355 1.61710 1.11751 1.12215 1.37132 1.23007 1.01671 1.02400 0.87767 1.21556 0.86993 0.93633 1.01357 0.87335 1.22908 1.07765 0.99006 0.97128 1.20385 0.80769 0.90927 0.76053 1.90142 1.53224 1.47077 1.49951 1.45923 1.14065 1.06829 1.58403 1.19732 0.89339 0.84046 0.96114 1.21270 1.19525 1.19531 0.97272 0.91566 1.24915 0.96657 0.95894 0.95907 1.69903 1.35484 1.24970 1.21615 0.86593 0.80594 0.78565 0.82100 1.19911 1.21016 1.19880 1.18039 0.93178 0.83724 0.97968 1.21113 0.94591 0.97279 1.02994 1.20718 0.98845 0.91957 1.00858 1.19778 0.94452 0.95224 1.03897 1.20657 1.00798 0.93203 1.01385 1.20893 0.94676 0.96336 1.00758 1.22780 1.03649 0.91115 1.02075 0.92333 0.90910 0.92463 0.76615 0.87825 0.91624 0.87439 0.90737 0.96573 0.92951 0.92775 0.85160 0.93443 0.93698 0.92145 0.84270 0.86663 0.92124 0.92333 0.92275 0.86919 0.80423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.70 59.84 0.64 1.38 16 2 N -0.74 -7.00 5.71 -67.08 -0.38 -7.38 16 3 C 0.51 6.96 7.52 -10.99 -0.08 6.88 16 4 O -0.52 -9.18 14.33 5.55 0.08 -9.10 16 5 C 0.03 0.45 4.89 -4.98 -0.02 0.43 16 6 N -0.50 -8.53 4.35 -237.73 -1.04 -9.57 16 7 C 0.00 -0.02 8.41 60.07 0.51 0.48 16 8 C 0.08 1.34 1.96 -68.86 -0.13 1.21 16 9 H 0.11 1.90 6.53 -51.93 -0.34 1.56 16 10 C -0.21 -3.64 8.35 37.16 0.31 -3.33 16 11 C 0.53 10.77 6.76 -10.99 -0.07 10.69 16 12 O -0.52 -11.22 9.92 5.55 0.06 -11.17 16 13 N -0.53 -11.21 2.69 -114.74 -0.31 -11.52 16 14 C 0.23 5.00 4.08 -5.20 -0.02 4.98 16 15 C -0.54 -12.58 5.82 -34.44 -0.20 -12.79 16 16 H 0.07 1.61 7.69 -52.49 -0.40 1.21 16 17 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.88 -22.17 13.29 55.43 0.74 -21.44 16 19 Si 0.89 19.08 29.54 -169.99 -5.02 14.06 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C 0.17 3.47 6.47 -83.69 -0.54 2.93 16 24 C -0.14 -2.76 9.04 -39.39 -0.36 -3.11 16 25 C -0.11 -1.81 9.69 -39.61 -0.38 -2.19 16 26 C -0.13 -2.15 5.88 -104.59 -0.62 -2.77 16 27 C -0.10 -1.29 10.01 36.01 0.36 -0.93 16 28 C -0.11 -1.86 9.69 -39.61 -0.38 -2.24 16 29 C -0.18 -3.50 9.05 -39.39 -0.36 -3.85 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.40 2.50 8.83 -40.82 -0.36 2.14 16 34 H 0.10 1.18 8.00 -51.93 -0.42 0.76 16 35 H 0.07 0.76 6.90 -51.93 -0.36 0.40 16 36 H 0.11 2.09 5.08 -51.93 -0.26 1.83 16 37 H 0.07 1.31 5.82 -51.93 -0.30 1.01 16 38 H 0.02 0.26 6.32 -51.93 -0.33 -0.07 16 39 H 0.05 0.91 6.47 -51.93 -0.34 0.58 16 40 H 0.05 0.81 6.67 -51.93 -0.35 0.46 16 41 H 0.13 2.62 3.99 -51.93 -0.21 2.42 16 42 H 0.05 1.05 6.00 -51.93 -0.31 0.74 16 43 H 0.05 1.06 6.82 -51.93 -0.35 0.70 16 44 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 45 H 0.14 2.91 6.16 -52.49 -0.32 2.58 16 46 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 49 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 50 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 51 H 0.18 3.71 4.54 -56.20 -0.25 3.46 16 LS Contribution 393.90 15.07 5.94 5.94 Total: -1.00 -29.20 393.90 -8.81 -38.01 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -7.42 Total: 12.80 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.46 Total: -0.63 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.99 Total: -49.90 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: 0.13 Total: -20.27 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.20 -8.81 -38.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270672293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.871 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds