Wall clock time and date at job start Wed Apr 1 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34775 * 120.00363 * 2 1 4 4 O 1.21285 * 120.00056 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00345 * 180.02562 * 3 2 1 6 6 N 1.46894 * 109.47158 * 180.02562 * 5 3 2 7 7 C 1.46901 * 111.00419 * 66.04535 * 6 5 3 8 8 C 1.46898 * 111.00058 * 190.00089 * 6 5 3 9 9 H 1.09000 * 109.47198 * 54.99514 * 8 6 5 10 10 C 1.53007 * 109.47128 * 294.99927 * 8 6 5 11 11 C 1.50700 * 109.47670 * 174.99872 * 8 6 5 12 12 O 1.21290 * 119.99713 * 10.87437 * 11 8 6 13 13 N 1.34776 * 120.00368 * 190.87932 * 11 8 6 14 14 C 1.46496 * 119.99747 * 5.15493 * 13 11 8 15 15 C 1.50700 * 109.46909 * 265.00432 * 14 13 11 16 16 H 1.07998 * 120.00241 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00260 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99456 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00325 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.46901 * 60.00025 * 19 17 15 21 21 H 1.48498 * 109.46835 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46896 * 300.00199 * 19 17 15 23 23 C 1.39925 * 119.99639 * 185.15191 * 13 11 8 24 24 C 1.38877 * 120.06496 * 172.95970 * 23 13 11 25 25 C 1.38108 * 119.92801 * 180.02562 * 24 23 13 26 26 C 1.38283 * 120.07015 * 0.25721 * 25 24 23 27 27 C 1.50701 * 119.93177 * 179.72433 * 26 25 24 28 28 C 1.38280 * 120.14123 * 359.48809 * 26 25 24 29 29 C 1.38118 * 120.07041 * 0.50991 * 28 26 25 30 30 H 1.09001 * 109.47119 * 59.99718 * 1 2 3 31 31 H 1.09002 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46899 * 299.99634 * 1 2 3 33 33 H 0.97003 * 120.00140 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.47052 * 60.00247 * 5 3 2 35 35 H 1.09001 * 109.46985 * 300.00151 * 5 3 2 36 36 H 1.08994 * 109.47281 * 183.95376 * 7 6 5 37 37 H 1.09002 * 109.46600 * 303.95433 * 7 6 5 38 38 H 1.09003 * 109.46755 * 63.95396 * 7 6 5 39 39 H 1.08998 * 109.46442 * 298.42349 * 10 8 6 40 40 H 1.08998 * 109.46774 * 58.42580 * 10 8 6 41 41 H 1.09000 * 109.46985 * 178.42173 * 10 8 6 42 42 H 1.09002 * 109.47446 * 25.00734 * 14 13 11 43 43 H 1.09000 * 109.46881 * 145.01343 * 14 13 11 44 44 H 0.97001 * 120.00161 * 179.97438 * 18 17 15 45 45 H 1.08000 * 120.03548 * 359.97438 * 24 23 13 46 46 H 1.07999 * 119.96791 * 179.97438 * 25 24 23 47 47 H 1.08999 * 109.47221 * 89.99529 * 27 26 25 48 48 H 1.08999 * 109.47478 * 210.00049 * 27 26 25 49 49 H 1.09004 * 109.46563 * 329.99598 * 27 26 25 50 50 H 1.08005 * 119.96714 * 180.23846 * 28 26 25 51 51 H 1.08000 * 120.03830 * 179.76578 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 -0.0006 6 7 4.1356 2.5521 0.0002 7 6 3.7866 3.2333 1.2540 8 6 5.5843 2.5984 -0.2385 9 1 5.8172 2.0709 -1.1635 10 6 6.3149 1.9296 0.9276 11 6 6.0290 4.0337 -0.3531 12 8 5.2686 4.9299 -0.0537 13 7 7.2717 4.3215 -0.7884 14 6 8.1507 3.2473 -1.2569 15 6 9.0396 2.7967 -0.1265 16 1 8.9577 3.2634 0.8440 17 6 9.9577 1.7885 -0.3312 18 7 10.0578 1.2205 -1.5131 19 14 11.0590 1.2294 1.0702 20 1 10.2207 0.7295 2.1893 21 1 11.9510 0.1415 0.5948 22 1 11.8812 2.3732 1.5402 23 6 7.7220 5.6463 -0.7927 24 6 9.0461 5.9300 -1.1008 25 6 9.4877 7.2386 -1.1037 26 6 8.6143 8.2653 -0.7952 27 6 9.1010 9.6916 -0.7933 28 6 7.2940 7.9866 -0.4932 29 6 6.8461 6.6800 -0.4885 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.9500 -0.8401 -0.0004 34 1 4.0089 0.6535 -0.8909 35 1 4.0096 0.6531 0.8891 36 1 4.0988 4.2761 1.2000 37 1 2.7084 3.1841 1.4062 38 1 4.2937 2.7448 2.0861 39 1 6.1044 2.4739 1.8482 40 1 5.9728 0.8996 1.0280 41 1 7.3882 1.9390 0.7373 42 1 7.5469 2.4077 -1.6012 43 1 8.7658 3.6138 -2.0788 44 1 10.7039 0.5115 -1.6573 45 1 9.7300 5.1282 -1.3370 46 1 10.5174 7.4599 -1.3428 47 1 8.9692 10.1218 -1.7861 48 1 8.5289 10.2698 -0.0678 49 1 10.1572 9.7146 -0.5246 50 1 6.6133 8.7910 -0.2564 51 1 5.8157 6.4626 -0.2489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270672293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:40 Heat of formation + Delta-G solvation = -25.078892 kcal Electronic energy + Delta-G solvation = -31780.884986 eV Core-core repulsion = 27680.950704 eV Total energy + Delta-G solvation = -4099.934282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.05396 -40.81006 -39.68876 -37.83580 -37.12248 -35.54057 -34.71182 -33.11441 -31.73831 -31.50742 -29.75879 -29.41586 -27.50068 -27.27752 -26.06706 -25.23255 -23.72983 -23.29456 -21.95724 -21.29903 -20.15659 -18.73994 -18.42097 -18.36067 -17.81346 -16.97724 -16.70409 -16.58046 -16.38994 -16.15989 -15.96204 -15.71482 -15.24593 -14.96005 -14.80623 -14.58923 -14.44743 -14.38271 -14.35410 -14.09620 -13.93310 -13.57765 -13.34700 -13.30385 -13.05321 -12.95712 -12.87841 -12.75831 -12.70157 -12.50139 -12.36165 -12.22741 -12.13774 -12.06095 -11.85606 -11.71073 -10.89125 -10.70460 -10.58532 -10.10834 -9.93685 -9.74497 -9.21158 -8.62734 -8.18588 -6.31726 0.42887 0.60783 1.43184 1.46465 1.51916 1.65459 1.69442 1.88279 2.28733 2.41870 3.02439 3.04791 3.13028 3.49380 3.84765 4.06113 4.13584 4.14223 4.16446 4.24891 4.32867 4.39050 4.46679 4.51116 4.55020 4.56546 4.64437 4.66072 4.69518 4.81809 4.92234 4.93141 4.94493 4.96163 4.99416 5.14744 5.21340 5.24397 5.33625 5.47332 5.50359 5.54013 5.60287 5.69073 5.80109 5.87343 5.95283 5.98649 6.00466 6.36935 6.50535 6.61455 6.76392 7.21053 7.32691 7.35678 8.84015 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008432 B = 0.003820 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.803264 B = 7328.192154 C =10094.584382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.725 5.725 3 C 0.511 3.489 4 O -0.567 6.567 5 C 0.032 3.968 6 N -0.521 5.521 7 C 0.012 3.988 8 C 0.085 3.915 9 H 0.111 0.889 10 C -0.199 4.199 11 C 0.517 3.483 12 O -0.539 6.539 13 N -0.538 5.538 14 C 0.243 3.757 15 C -0.530 4.530 16 H 0.053 0.947 17 C 0.037 3.963 18 N -0.910 5.910 19 Si 0.946 3.054 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.279 1.279 23 C 0.136 3.864 24 C -0.156 4.156 25 C -0.105 4.105 26 C -0.124 4.124 27 C -0.101 4.101 28 C -0.109 4.109 29 C -0.192 4.192 30 H 0.046 0.954 31 H 0.113 0.887 32 H 0.047 0.953 33 H 0.419 0.581 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.024 0.976 44 H 0.270 0.730 45 H 0.120 0.880 46 H 0.141 0.859 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.139 0.861 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.599 -1.433 2.607 9.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.378 5.378 3 C 0.297 3.703 4 O -0.445 6.445 5 C -0.098 4.098 6 N -0.245 5.245 7 C -0.136 4.136 8 C -0.026 4.026 9 H 0.129 0.871 10 C -0.258 4.258 11 C 0.308 3.692 12 O -0.420 6.420 13 N -0.258 5.258 14 C 0.124 3.876 15 C -0.568 4.568 16 H 0.071 0.929 17 C -0.165 4.165 18 N -0.548 5.548 19 Si 0.771 3.229 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.205 1.205 23 C 0.041 3.959 24 C -0.176 4.176 25 C -0.124 4.124 26 C -0.125 4.125 27 C -0.158 4.158 28 C -0.127 4.127 29 C -0.212 4.212 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.066 0.934 33 H 0.256 0.744 34 H 0.142 0.858 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.123 0.877 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.079 0.921 45 H 0.138 0.862 46 H 0.159 0.841 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.092 0.908 50 H 0.156 0.844 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.609 -0.233 2.252 9.872 hybrid contribution 1.377 -1.357 1.078 2.213 sum -8.233 -1.591 3.330 9.022 Atomic orbital electron populations 1.21630 0.78783 1.04152 1.01165 1.45695 1.08323 1.08444 1.75368 1.20800 0.90358 0.83853 0.75276 1.90680 1.70915 1.32932 1.49957 1.22119 0.91646 0.90710 1.05371 1.61622 1.10906 1.14846 1.37081 1.22771 1.01244 1.01138 0.88429 1.21450 0.87780 0.91786 1.01618 0.87095 1.22759 1.05860 1.00572 0.96569 1.20952 0.80405 0.92115 0.75680 1.90156 1.53456 1.47867 1.50502 1.45920 1.14236 1.06864 1.58738 1.19409 0.89000 0.84095 0.95126 1.21232 1.19594 1.19145 0.96815 0.92908 1.25441 0.97599 0.95977 0.97521 1.69978 1.36272 1.25582 1.22934 0.85791 0.79131 0.77895 0.80049 1.19178 1.20701 1.20470 1.18321 0.93988 0.83885 0.99680 1.21090 0.94030 0.98179 1.04342 1.21051 1.00342 0.91056 0.99909 1.20234 0.93665 0.97211 1.01433 1.20728 1.01816 0.90327 1.02895 1.21219 0.95829 0.95825 0.99837 1.22731 1.03011 0.92251 1.03200 0.93568 0.86899 0.93437 0.74429 0.85756 0.89357 0.90066 0.91216 0.95550 0.93448 0.89899 0.87728 0.93646 0.95775 0.92084 0.86198 0.84113 0.90483 0.90810 0.90804 0.84354 0.81854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 10.70 127.77 1.37 2.62 16 2 N -0.72 -12.09 5.71 -484.53 -2.77 -14.85 16 3 C 0.51 13.32 7.52 87.66 0.66 13.98 16 4 O -0.57 -20.38 14.33 -3.05 -0.04 -20.42 16 5 C 0.03 0.79 4.89 85.56 0.42 1.21 16 6 N -0.52 -17.57 4.35 -906.04 -3.94 -21.51 16 7 C 0.01 0.41 8.41 127.69 1.07 1.48 16 8 C 0.08 3.03 1.96 44.17 0.09 3.12 16 9 H 0.11 3.90 6.53 -2.39 -0.02 3.89 16 10 C -0.20 -6.80 8.35 71.98 0.60 -6.20 16 11 C 0.52 21.89 6.76 87.66 0.59 22.49 16 12 O -0.54 -24.18 9.92 -3.06 -0.03 -24.21 16 13 N -0.54 -23.65 2.69 -635.31 -1.71 -25.36 16 14 C 0.24 11.18 4.08 85.63 0.35 11.53 16 15 C -0.53 -25.38 5.82 25.60 0.15 -25.23 16 16 H 0.05 2.65 7.69 -2.91 -0.02 2.62 16 17 C 0.04 1.77 5.46 84.66 0.46 2.23 16 18 N -0.91 -46.10 13.29 21.45 0.28 -45.82 16 19 Si 0.95 39.02 29.54 68.60 2.03 41.05 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 23 C 0.14 5.89 6.47 38.15 0.25 6.14 16 24 C -0.16 -6.34 9.04 22.39 0.20 -6.14 16 25 C -0.11 -3.52 9.69 22.25 0.22 -3.31 16 26 C -0.12 -3.79 5.88 -19.84 -0.12 -3.91 16 27 C -0.10 -2.14 10.01 71.24 0.71 -1.43 16 28 C -0.11 -3.64 9.69 22.25 0.22 -3.42 16 29 C -0.19 -7.81 9.05 22.39 0.20 -7.60 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.42 3.92 8.83 -92.71 -0.82 3.10 16 34 H 0.12 2.53 8.00 -2.39 -0.02 2.51 16 35 H 0.09 1.79 6.90 -2.39 -0.02 1.78 16 36 H 0.08 3.29 5.08 -2.39 -0.01 3.28 16 37 H 0.07 2.51 5.82 -2.39 -0.01 2.50 16 38 H 0.03 0.84 6.32 -2.39 -0.02 0.83 16 39 H 0.05 1.64 6.47 -2.39 -0.02 1.62 16 40 H 0.08 2.30 6.67 -2.39 -0.02 2.28 16 41 H 0.10 4.22 3.99 -2.39 -0.01 4.21 16 42 H 0.05 2.09 6.00 -2.39 -0.01 2.07 16 43 H 0.02 1.20 6.82 -2.39 -0.02 1.19 16 44 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 45 H 0.12 5.27 6.16 -2.91 -0.02 5.25 16 46 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 47 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.07 1.37 8.09 -2.39 -0.02 1.35 16 49 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 50 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 51 H 0.17 7.14 4.54 -61.68 -0.28 6.86 16 Total: -1.00 -65.96 393.90 1.14 -64.82 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: -0.12 Total: 38.75 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 7.44 Total: 7.55 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -8.14 Total: -107.54 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -0.07 Total: -44.63 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -65.96 1.14 -64.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270672293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.745 kcal (2) G-P(sol) polarization free energy of solvation -65.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds