Wall clock time and date at job start Wed Apr 1 2020 05:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38278 * 119.93414 * 2 1 4 4 C 1.38113 * 120.07425 * 180.02562 * 3 2 1 5 5 C 1.38861 * 119.92801 * 359.96864 * 4 3 2 6 6 N 1.39932 * 120.07112 * 179.97438 * 5 4 3 7 7 C 1.46493 * 119.99910 * 8.22406 * 6 5 4 8 8 C 1.50701 * 109.47420 * 275.14922 * 7 6 5 9 9 H 1.07999 * 119.99892 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00130 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00407 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99987 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46945 * 60.00085 * 12 10 8 14 14 H 1.48504 * 109.46974 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47253 * 299.99980 * 12 10 8 16 16 C 1.34780 * 119.99703 * 188.23143 * 6 5 4 17 17 O 1.21282 * 120.00427 * 6.17680 * 16 6 5 18 18 C 1.50706 * 119.99362 * 186.18114 * 16 6 5 19 19 H 1.08992 * 109.47254 * 33.95648 * 18 16 6 20 20 C 1.53002 * 109.46949 * 273.95740 * 18 16 6 21 21 N 1.46899 * 109.46751 * 153.96053 * 18 16 6 22 22 C 1.46893 * 111.00108 * 307.54110 * 21 18 16 23 23 C 1.46903 * 110.99693 * 183.58443 * 21 18 16 24 24 C 1.53000 * 109.46893 * 189.99778 * 23 21 18 25 25 C 1.50705 * 109.46896 * 180.02562 * 24 23 21 26 26 N 1.34773 * 119.99950 * 180.02562 * 25 24 23 27 27 O 1.21280 * 120.00134 * 0.02562 * 25 24 23 28 28 C 1.38879 * 119.86191 * 0.25708 * 5 4 3 29 29 C 1.38114 * 119.92241 * 359.51591 * 28 5 4 30 30 H 1.09000 * 109.46731 * 90.00152 * 1 2 3 31 31 H 1.08994 * 109.47451 * 210.00336 * 1 2 3 32 32 H 1.09002 * 109.46761 * 330.01045 * 1 2 3 33 33 H 1.08009 * 119.96116 * 359.96761 * 3 2 1 34 34 H 1.08001 * 120.03206 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.46975 * 35.14734 * 7 6 5 36 36 H 1.08996 * 109.47144 * 155.14649 * 7 6 5 37 37 H 0.97002 * 120.00644 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.47258 * 64.81174 * 20 18 16 39 39 H 1.08996 * 109.47342 * 184.81468 * 20 18 16 40 40 H 1.09007 * 109.47399 * 304.81426 * 20 18 16 41 41 H 1.09002 * 109.47043 * 291.09393 * 22 21 18 42 42 H 1.08995 * 109.47466 * 51.09685 * 22 21 18 43 43 H 1.09002 * 109.47136 * 171.09791 * 22 21 18 44 44 H 1.08999 * 109.47584 * 310.00497 * 23 21 18 45 45 H 1.09007 * 109.46831 * 70.00022 * 23 21 18 46 46 H 1.08994 * 109.47366 * 300.00034 * 24 23 21 47 47 H 1.08997 * 109.47037 * 60.00990 * 24 23 21 48 48 H 0.97004 * 120.00155 * 359.97438 * 26 25 24 49 49 H 0.96998 * 120.00020 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.03552 * 179.74313 * 28 5 4 51 51 H 1.08007 * 119.95951 * 180.22918 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5782 1.2017 -0.0005 5 6 4.2739 -0.0001 -0.0004 6 7 5.6732 -0.0001 -0.0015 7 6 6.4059 1.2556 0.1787 8 6 6.5456 1.9510 -1.1509 9 1 6.1306 1.5022 -2.0413 10 6 7.2043 3.1596 -1.2309 11 7 7.7101 3.7059 -0.1469 12 14 7.3781 4.0212 -2.8792 13 1 6.0301 4.3099 -3.4314 14 1 8.1207 5.2942 -2.6965 15 1 8.1211 3.1448 -3.8200 16 6 6.3469 -1.1555 -0.1685 17 8 5.7455 -2.1759 -0.4293 18 6 7.8475 -1.1793 -0.0311 19 1 8.1541 -0.4611 0.7293 20 6 8.4881 -0.8090 -1.3703 21 7 8.2816 -2.5260 0.3637 22 6 7.5506 -2.9879 1.5511 23 6 9.7326 -2.5660 0.5901 24 6 10.1834 -4.0190 0.7528 25 6 11.6718 -4.0600 0.9857 26 7 12.2946 -5.2428 1.1573 27 8 12.3091 -3.0287 1.0188 28 6 3.5780 -1.2019 -0.0052 29 6 2.1969 -1.1984 0.0001 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5137 33 1 1.6553 2.1327 -0.0005 34 1 4.1164 2.1380 -0.0010 35 1 5.8604 1.8986 0.8694 36 1 7.3954 1.0439 0.5839 37 1 8.1732 4.5564 -0.2031 38 1 8.2350 0.2210 -1.6217 39 1 9.5709 -0.9090 -1.2951 40 1 8.1149 -1.4751 -2.1482 41 1 7.8563 -2.4008 2.4171 42 1 6.4797 -2.8655 1.3889 43 1 7.7733 -4.0400 1.7285 44 1 10.2457 -2.1195 -0.2616 45 1 9.9748 -2.0070 1.4940 46 1 9.6703 -4.4654 1.6046 47 1 9.9413 -4.5779 -0.1510 48 1 11.7849 -6.0677 1.1312 49 1 13.2525 -5.2692 1.3075 50 1 4.1163 -2.1382 -0.0093 51 1 1.6552 -2.1328 0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286561683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:24 Heat of formation + Delta-G solvation = -29.143706 kcal Electronic energy + Delta-G solvation = -31499.368403 eV Core-core repulsion = 27399.257857 eV Total energy + Delta-G solvation = -4100.110546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.48673 -39.64822 -38.42310 -36.82350 -35.40477 -33.85434 -32.91317 -32.21358 -31.05461 -30.31822 -29.93422 -27.58838 -26.38775 -25.58120 -24.01468 -23.40707 -22.06297 -21.77448 -20.55494 -20.12811 -18.69259 -17.50051 -17.19253 -16.75222 -16.60980 -16.32403 -15.92008 -15.12237 -15.05328 -14.76772 -14.59775 -14.41849 -14.26694 -13.70595 -13.48189 -13.35036 -13.18952 -13.08045 -12.86263 -12.78212 -12.51217 -12.09164 -11.92262 -11.87696 -11.73046 -11.60174 -11.43797 -11.30043 -11.06613 -11.00823 -10.89444 -10.77297 -10.60588 -10.46902 -10.25022 -10.10883 -9.99452 -9.89776 -9.08229 -8.72522 -8.61786 -8.31498 -8.07017 -7.08820 -6.26921 -4.35265 1.84321 2.03282 2.50325 3.14862 3.21591 3.22932 3.26902 3.32103 3.59211 4.20958 4.27967 4.47248 4.73482 4.89198 5.03601 5.05752 5.10509 5.33040 5.36969 5.48078 5.50556 5.51816 5.61209 5.63575 5.70165 5.75527 5.82426 5.93146 5.97512 5.99658 6.13517 6.15743 6.24163 6.28374 6.30815 6.39534 6.55614 6.57862 6.75860 6.86570 6.91745 6.97773 7.06577 7.09024 7.16942 7.20826 7.22935 7.32851 7.65414 7.82468 7.88874 8.09159 8.12135 8.66718 8.80050 9.31946 10.78976 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008481 B = 0.003621 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3300.623695 B = 7731.609427 C =10515.647854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.132 4.132 3 C -0.104 4.104 4 C -0.138 4.138 5 C 0.167 3.833 6 N -0.535 5.535 7 C 0.227 3.773 8 C -0.538 4.538 9 H 0.064 0.936 10 C 0.070 3.930 11 N -0.887 5.887 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.524 3.476 17 O -0.527 6.527 18 C 0.075 3.925 19 H 0.071 0.929 20 C -0.147 4.147 21 N -0.523 5.523 22 C 0.012 3.988 23 C 0.066 3.934 24 C -0.137 4.137 25 C 0.517 3.483 26 N -0.860 5.860 27 O -0.541 6.541 28 C -0.170 4.170 29 C -0.108 4.108 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.268 0.732 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.021 0.979 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.094 0.906 47 H 0.104 0.896 48 H 0.401 0.599 49 H 0.399 0.601 50 H 0.170 0.830 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 -14.205 3.734 14.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.133 4.133 3 C -0.123 4.123 4 C -0.159 4.159 5 C 0.071 3.929 6 N -0.255 5.255 7 C 0.108 3.892 8 C -0.576 4.576 9 H 0.082 0.918 10 C -0.134 4.134 11 N -0.524 5.524 12 Si 0.723 3.277 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.314 3.686 17 O -0.406 6.406 18 C -0.036 4.036 19 H 0.088 0.912 20 C -0.205 4.205 21 N -0.248 5.248 22 C -0.136 4.136 23 C -0.062 4.062 24 C -0.177 4.177 25 C 0.302 3.698 26 N -0.424 5.424 27 O -0.417 6.417 28 C -0.190 4.190 29 C -0.127 4.127 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.158 0.842 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.061 0.939 46 H 0.112 0.888 47 H 0.122 0.878 48 H 0.229 0.771 49 H 0.229 0.771 50 H 0.187 0.813 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.492 -14.077 3.280 14.462 hybrid contribution 0.547 0.830 -0.131 1.002 sum 0.055 -13.247 3.149 13.616 Atomic orbital electron populations 1.20657 0.92131 1.01801 1.01451 1.19768 0.95399 0.93529 1.04601 1.20738 0.93531 0.97017 1.00994 1.21144 0.93966 0.97931 1.02814 1.18029 0.82765 0.94149 0.97942 1.46046 1.04094 1.10282 1.65031 1.19749 0.92185 0.78908 0.98389 1.21290 1.37286 1.05403 0.93649 0.91776 1.24898 0.94795 0.96771 0.96931 1.69899 1.36126 1.18558 1.27838 0.86569 0.78561 0.78895 0.83656 1.19981 1.21075 1.19870 1.20414 0.89534 0.82534 0.76086 1.90325 1.68617 1.34015 1.47628 1.21556 0.91876 0.89778 1.00383 0.91154 1.21940 0.99908 1.04566 0.94084 1.61752 1.03919 1.24022 1.35099 1.22602 1.00792 0.99988 0.90214 1.21901 0.87749 0.94377 1.02215 1.21619 0.91127 1.00237 1.04746 1.20781 0.90666 0.83318 0.75020 1.43908 1.12752 1.08879 1.76849 1.90776 1.67959 1.33110 1.49897 1.22402 0.94232 0.99722 1.02627 1.20851 0.93933 0.96751 1.01116 0.92083 0.92332 0.92246 0.86599 0.84165 0.93951 0.93377 0.92233 0.88274 0.91975 0.92141 0.96036 0.89923 0.91484 0.89177 0.93891 0.88808 0.87760 0.77088 0.77054 0.81333 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.01 36.01 0.36 -0.89 16 2 C -0.13 -2.10 5.88 -104.59 -0.62 -2.71 16 3 C -0.10 -1.78 9.69 -39.61 -0.38 -2.16 16 4 C -0.14 -2.75 9.02 -39.40 -0.36 -3.10 16 5 C 0.17 3.46 6.46 -83.69 -0.54 2.91 16 6 N -0.54 -11.36 2.69 -114.74 -0.31 -11.66 16 7 C 0.23 5.19 4.23 -5.20 -0.02 5.17 16 8 C -0.54 -13.32 6.97 -34.44 -0.24 -13.56 16 9 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 10 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -23.45 13.29 55.43 0.74 -22.71 16 12 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 C 0.52 10.56 5.67 -10.98 -0.06 10.50 16 17 O -0.53 -10.98 11.44 5.56 0.06 -10.91 16 18 C 0.07 1.35 1.70 -68.86 -0.12 1.23 16 19 H 0.07 1.34 6.19 -51.93 -0.32 1.01 16 20 C -0.15 -2.66 9.13 37.16 0.34 -2.32 16 21 N -0.52 -8.08 4.40 -236.29 -1.04 -9.12 16 22 C 0.01 0.17 8.85 60.06 0.53 0.70 16 23 C 0.07 0.91 4.10 -3.82 -0.02 0.89 16 24 C -0.14 -1.38 5.62 -27.88 -0.16 -1.54 16 25 C 0.52 5.67 8.10 -10.98 -0.09 5.58 16 26 N -0.86 -5.64 8.87 31.22 0.28 -5.36 16 27 O -0.54 -8.54 16.82 5.56 0.09 -8.44 16 28 C -0.17 -3.27 8.97 -39.39 -0.35 -3.62 16 29 C -0.11 -1.80 9.69 -39.61 -0.38 -2.18 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.14 2.98 6.15 -52.49 -0.32 2.66 16 35 H 0.04 1.03 6.89 -51.93 -0.36 0.67 16 36 H 0.05 1.13 5.63 -51.93 -0.29 0.84 16 37 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.10 2.03 5.99 -51.93 -0.31 1.72 16 39 H 0.06 1.01 6.08 -51.93 -0.32 0.69 16 40 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 41 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 42 H 0.08 1.35 5.51 -51.93 -0.29 1.06 16 43 H 0.07 0.77 6.71 -51.93 -0.35 0.42 16 44 H 0.09 1.34 5.85 -51.93 -0.30 1.03 16 45 H 0.04 0.64 8.03 -51.93 -0.42 0.22 16 46 H 0.09 0.79 6.66 -51.93 -0.35 0.44 16 47 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.40 1.38 8.83 -40.82 -0.36 1.02 16 49 H 0.40 2.31 8.93 -40.82 -0.36 1.94 16 50 H 0.17 3.36 4.74 -55.04 -0.26 3.10 16 51 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -30.30 401.03 -8.88 -39.18 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.53 Total: 11.31 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.20 Total: -3.41 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.34 Total: -48.86 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.16 Total: -19.36 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.30 -8.88 -39.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286561683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.041 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds