Wall clock time and date at job start Wed Apr 1 2020 05:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38278 * 119.93414 * 2 1 4 4 C 1.38113 * 120.07425 * 180.02562 * 3 2 1 5 5 C 1.38861 * 119.92801 * 359.96864 * 4 3 2 6 6 N 1.39932 * 120.07112 * 179.97438 * 5 4 3 7 7 C 1.46493 * 119.99910 * 8.22406 * 6 5 4 8 8 C 1.50701 * 109.47420 * 275.14922 * 7 6 5 9 9 H 1.07999 * 119.99892 * 359.97438 * 8 7 6 10 10 C 1.37872 * 120.00130 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00407 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99987 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46945 * 60.00085 * 12 10 8 14 14 H 1.48504 * 109.46974 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47253 * 299.99980 * 12 10 8 16 16 C 1.34780 * 119.99703 * 188.23143 * 6 5 4 17 17 O 1.21282 * 120.00427 * 6.17680 * 16 6 5 18 18 C 1.50706 * 119.99362 * 186.18114 * 16 6 5 19 19 H 1.08992 * 109.47254 * 33.95648 * 18 16 6 20 20 C 1.53002 * 109.46949 * 273.95740 * 18 16 6 21 21 N 1.46899 * 109.46751 * 153.96053 * 18 16 6 22 22 C 1.46893 * 111.00108 * 307.54110 * 21 18 16 23 23 C 1.46903 * 110.99693 * 183.58443 * 21 18 16 24 24 C 1.53000 * 109.46893 * 189.99778 * 23 21 18 25 25 C 1.50705 * 109.46896 * 180.02562 * 24 23 21 26 26 N 1.34773 * 119.99950 * 180.02562 * 25 24 23 27 27 O 1.21280 * 120.00134 * 0.02562 * 25 24 23 28 28 C 1.38879 * 119.86191 * 0.25708 * 5 4 3 29 29 C 1.38114 * 119.92241 * 359.51591 * 28 5 4 30 30 H 1.09000 * 109.46731 * 90.00152 * 1 2 3 31 31 H 1.08994 * 109.47451 * 210.00336 * 1 2 3 32 32 H 1.09002 * 109.46761 * 330.01045 * 1 2 3 33 33 H 1.08009 * 119.96116 * 359.96761 * 3 2 1 34 34 H 1.08001 * 120.03206 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.46975 * 35.14734 * 7 6 5 36 36 H 1.08996 * 109.47144 * 155.14649 * 7 6 5 37 37 H 0.97002 * 120.00644 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.47258 * 64.81174 * 20 18 16 39 39 H 1.08996 * 109.47342 * 184.81468 * 20 18 16 40 40 H 1.09007 * 109.47399 * 304.81426 * 20 18 16 41 41 H 1.09002 * 109.47043 * 291.09393 * 22 21 18 42 42 H 1.08995 * 109.47466 * 51.09685 * 22 21 18 43 43 H 1.09002 * 109.47136 * 171.09791 * 22 21 18 44 44 H 1.08999 * 109.47584 * 310.00497 * 23 21 18 45 45 H 1.09007 * 109.46831 * 70.00022 * 23 21 18 46 46 H 1.08994 * 109.47366 * 300.00034 * 24 23 21 47 47 H 1.08997 * 109.47037 * 60.00990 * 24 23 21 48 48 H 0.97004 * 120.00155 * 359.97438 * 26 25 24 49 49 H 0.96998 * 120.00020 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.03552 * 179.74313 * 28 5 4 51 51 H 1.08007 * 119.95951 * 180.22918 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5782 1.2017 -0.0005 5 6 4.2739 -0.0001 -0.0004 6 7 5.6732 -0.0001 -0.0015 7 6 6.4059 1.2556 0.1787 8 6 6.5456 1.9510 -1.1509 9 1 6.1306 1.5022 -2.0413 10 6 7.2043 3.1596 -1.2309 11 7 7.7101 3.7059 -0.1469 12 14 7.3781 4.0212 -2.8792 13 1 6.0301 4.3099 -3.4314 14 1 8.1207 5.2942 -2.6965 15 1 8.1211 3.1448 -3.8200 16 6 6.3469 -1.1555 -0.1685 17 8 5.7455 -2.1759 -0.4293 18 6 7.8475 -1.1793 -0.0311 19 1 8.1541 -0.4611 0.7293 20 6 8.4881 -0.8090 -1.3703 21 7 8.2816 -2.5260 0.3637 22 6 7.5506 -2.9879 1.5511 23 6 9.7326 -2.5660 0.5901 24 6 10.1834 -4.0190 0.7528 25 6 11.6718 -4.0600 0.9857 26 7 12.2946 -5.2428 1.1573 27 8 12.3091 -3.0287 1.0188 28 6 3.5780 -1.2019 -0.0052 29 6 2.1969 -1.1984 0.0001 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8901 0.5137 33 1 1.6553 2.1327 -0.0005 34 1 4.1164 2.1380 -0.0010 35 1 5.8604 1.8986 0.8694 36 1 7.3954 1.0439 0.5839 37 1 8.1732 4.5564 -0.2031 38 1 8.2350 0.2210 -1.6217 39 1 9.5709 -0.9090 -1.2951 40 1 8.1149 -1.4751 -2.1482 41 1 7.8563 -2.4008 2.4171 42 1 6.4797 -2.8655 1.3889 43 1 7.7733 -4.0400 1.7285 44 1 10.2457 -2.1195 -0.2616 45 1 9.9748 -2.0070 1.4940 46 1 9.6703 -4.4654 1.6046 47 1 9.9413 -4.5779 -0.1510 48 1 11.7849 -6.0677 1.1312 49 1 13.2525 -5.2692 1.3075 50 1 4.1163 -2.1382 -0.0093 51 1 1.6552 -2.1328 0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286561683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:23 Heat of formation + Delta-G solvation = -49.938767 kcal Electronic energy + Delta-G solvation = -31500.270144 eV Core-core repulsion = 27399.257857 eV Total energy + Delta-G solvation = -4101.012287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.02238 -40.60040 -39.78212 -38.12901 -37.06720 -34.74503 -34.64431 -33.57093 -32.28742 -31.75688 -31.13901 -29.41616 -27.65437 -26.75601 -25.42666 -25.18074 -23.39040 -23.14164 -21.82347 -21.11773 -20.20611 -18.77072 -18.47018 -18.29690 -17.92505 -17.64527 -16.99663 -16.60253 -16.35345 -16.30471 -16.10341 -15.77251 -15.50570 -15.04341 -14.73212 -14.62784 -14.48256 -14.38873 -14.32000 -14.09926 -13.89765 -13.51232 -13.35749 -13.25925 -12.95256 -12.91342 -12.87732 -12.75182 -12.67578 -12.51510 -12.37227 -12.27905 -12.14030 -11.90900 -11.81112 -11.65970 -11.05253 -10.72911 -10.64395 -10.62542 -10.19303 -9.75166 -9.38158 -8.64665 -8.22077 -6.38358 0.40090 0.59280 1.40469 1.41266 1.48369 1.63686 1.66472 1.92283 2.37550 2.52848 3.01233 3.04334 3.08394 3.41748 3.81576 3.99963 4.04188 4.09243 4.13848 4.16271 4.31233 4.32222 4.40090 4.50304 4.54916 4.56630 4.61339 4.65692 4.76508 4.84254 4.89993 4.91803 4.93969 4.96551 4.98922 5.07858 5.10197 5.21075 5.27881 5.34616 5.49178 5.57583 5.64003 5.76604 5.83861 5.86437 5.93172 5.93939 6.01585 6.32926 6.44397 6.49417 6.72059 7.14826 7.32014 7.38947 8.80676 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008481 B = 0.003621 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3300.623695 B = 7731.609427 C =10515.647854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.123 4.123 3 C -0.105 4.105 4 C -0.158 4.158 5 C 0.134 3.866 6 N -0.542 5.542 7 C 0.246 3.754 8 C -0.535 4.535 9 H 0.050 0.950 10 C 0.031 3.969 11 N -0.915 5.915 12 Si 0.950 3.050 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.270 1.270 16 C 0.522 3.478 17 O -0.534 6.534 18 C 0.079 3.921 19 H 0.055 0.945 20 C -0.138 4.138 21 N -0.520 5.520 22 C 0.013 3.987 23 C 0.066 3.934 24 C -0.127 4.127 25 C 0.516 3.484 26 N -0.835 5.835 27 O -0.598 6.598 28 C -0.180 4.180 29 C -0.105 4.105 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.139 0.861 34 H 0.115 0.885 35 H 0.023 0.977 36 H 0.039 0.961 37 H 0.269 0.731 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.021 0.979 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.028 0.972 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.420 0.580 49 H 0.406 0.594 50 H 0.161 0.839 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 -16.387 3.436 16.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.124 4.124 3 C -0.124 4.124 4 C -0.179 4.179 5 C 0.039 3.961 6 N -0.262 5.262 7 C 0.126 3.874 8 C -0.573 4.573 9 H 0.068 0.932 10 C -0.170 4.170 11 N -0.553 5.553 12 Si 0.775 3.225 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.195 1.195 16 C 0.312 3.688 17 O -0.414 6.414 18 C -0.032 4.032 19 H 0.072 0.928 20 C -0.196 4.196 21 N -0.245 5.245 22 C -0.135 4.135 23 C -0.062 4.062 24 C -0.167 4.167 25 C 0.302 3.698 26 N -0.399 5.399 27 O -0.479 6.479 28 C -0.200 4.200 29 C -0.124 4.124 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.157 0.843 34 H 0.133 0.867 35 H 0.041 0.959 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.046 0.954 46 H 0.137 0.863 47 H 0.141 0.859 48 H 0.251 0.749 49 H 0.238 0.762 50 H 0.178 0.822 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.996 -16.336 2.985 16.726 hybrid contribution 0.907 1.414 0.003 1.680 sum -1.089 -14.922 2.989 15.257 Atomic orbital electron populations 1.20732 0.88683 1.03548 1.02817 1.20240 0.97790 0.92450 1.01882 1.21049 0.92390 0.98906 1.00025 1.21090 0.95390 0.96694 1.04693 1.18328 0.82521 0.95206 1.00013 1.45985 1.04686 1.09846 1.65650 1.19333 0.91516 0.79442 0.97124 1.21312 1.36749 1.05534 0.93696 0.93189 1.25520 0.94554 0.97314 0.99645 1.69985 1.36961 1.18952 1.29416 0.85724 0.78438 0.78047 0.80284 1.19874 1.20530 1.19476 1.20708 0.90241 0.82112 0.75721 1.90309 1.69007 1.33967 1.48106 1.21445 0.90598 0.91264 0.99934 0.92788 1.21805 1.00954 1.02674 0.94121 1.61826 1.04965 1.21788 1.35889 1.22638 0.99225 1.02048 0.89563 1.21901 0.86379 0.97028 1.00877 1.21544 0.90776 0.97655 1.06679 1.20903 0.90880 0.83545 0.74481 1.43689 1.13268 1.08408 1.74579 1.90765 1.68998 1.35260 1.52865 1.22397 0.95538 0.98612 1.03454 1.21222 0.92928 0.98582 0.99645 0.90714 0.90420 0.90809 0.84271 0.86664 0.95918 0.94303 0.92157 0.91091 0.90369 0.92054 0.95999 0.92149 0.87950 0.90587 0.95402 0.86332 0.85921 0.74873 0.76243 0.82201 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 10.01 71.24 0.71 -1.31 16 2 C -0.12 -3.59 5.88 -19.84 -0.12 -3.71 16 3 C -0.11 -3.51 9.69 22.25 0.22 -3.29 16 4 C -0.16 -6.51 9.02 22.39 0.20 -6.31 16 5 C 0.13 5.76 6.46 38.15 0.25 6.01 16 6 N -0.54 -24.29 2.69 -635.31 -1.71 -26.00 16 7 C 0.25 12.02 4.23 85.63 0.36 12.39 16 8 C -0.53 -27.76 6.97 25.60 0.18 -27.58 16 9 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 10 C 0.03 1.62 5.46 84.65 0.46 2.08 16 11 N -0.91 -50.02 13.29 21.45 0.28 -49.73 16 12 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 14 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 16 C 0.52 21.89 5.67 87.66 0.50 22.39 16 17 O -0.53 -22.74 11.44 -3.04 -0.03 -22.78 16 18 C 0.08 2.97 1.70 44.17 0.08 3.05 16 19 H 0.05 2.20 6.19 -2.39 -0.01 2.19 16 20 C -0.14 -5.18 9.13 71.98 0.66 -4.52 16 21 N -0.52 -16.02 4.40 -901.47 -3.97 -19.99 16 22 C 0.01 0.36 8.85 127.69 1.13 1.49 16 23 C 0.07 1.81 4.10 86.30 0.35 2.17 16 24 C -0.13 -2.29 5.62 29.85 0.17 -2.12 16 25 C 0.52 10.60 8.10 87.66 0.71 11.31 16 26 N -0.84 -8.92 8.87 -173.53 -1.54 -10.46 16 27 O -0.60 -18.95 16.82 -3.03 -0.05 -19.00 16 28 C -0.18 -6.96 8.97 22.39 0.20 -6.76 16 29 C -0.11 -3.31 9.69 22.25 0.22 -3.09 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 32 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 33 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 34 H 0.12 5.24 6.15 -2.91 -0.02 5.22 16 35 H 0.02 1.19 6.89 -2.39 -0.02 1.18 16 36 H 0.04 1.97 5.63 -2.39 -0.01 1.95 16 37 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.07 3.07 5.99 -2.39 -0.01 3.05 16 39 H 0.08 2.63 6.08 -2.39 -0.01 2.61 16 40 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.02 0.60 8.08 -2.39 -0.02 0.58 16 42 H 0.06 1.97 5.51 -2.39 -0.01 1.96 16 43 H 0.10 2.08 6.71 -2.39 -0.02 2.06 16 44 H 0.08 2.29 5.85 -2.39 -0.01 2.28 16 45 H 0.03 0.85 8.03 -2.38 -0.02 0.83 16 46 H 0.12 1.57 6.66 -2.39 -0.02 1.56 16 47 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.42 1.47 8.83 -92.71 -0.82 0.65 16 49 H 0.41 3.83 8.93 -92.71 -0.83 3.00 16 50 H 0.16 6.45 4.74 -43.40 -0.21 6.24 16 51 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -69.14 401.03 0.42 -68.71 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -0.86 Total: 33.02 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 6.27 Total: 2.18 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -6.93 Total: -106.17 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.09 Total: -41.77 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -69.14 0.42 -68.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286561683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.776 kcal (2) G-P(sol) polarization free energy of solvation -69.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds