Wall clock time and date at job start Wed Apr 1 2020 05:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38286 * 119.92628 * 2 1 4 4 C 1.38113 * 120.06887 * 179.74869 * 3 2 1 5 5 C 1.38874 * 119.92840 * 0.25235 * 4 3 2 6 6 N 1.39920 * 120.06624 * 179.97438 * 5 4 3 7 7 C 1.46495 * 120.00530 * 352.95791 * 6 5 4 8 8 C 1.50698 * 109.47514 * 85.00405 * 7 6 5 9 9 H 1.08002 * 119.99559 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00395 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00119 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00044 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46980 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47314 * 119.99708 * 12 10 8 15 15 H 1.48499 * 109.46976 * 239.99379 * 12 10 8 16 16 C 1.34783 * 119.99690 * 172.95435 * 6 5 4 17 17 O 1.21282 * 120.00175 * 5.15178 * 16 6 5 18 18 C 1.50699 * 119.99982 * 185.14692 * 16 6 5 19 19 H 1.09003 * 109.47235 * 310.87882 * 18 16 6 20 20 C 1.53010 * 109.46781 * 70.87586 * 18 16 6 21 21 N 1.46901 * 109.47140 * 190.87456 * 18 16 6 22 22 C 1.46898 * 110.99821 * 298.95649 * 21 18 16 23 23 C 1.46906 * 110.99722 * 175.00174 * 21 18 16 24 24 C 1.52996 * 109.46640 * 189.99934 * 23 21 18 25 25 C 1.50706 * 109.46985 * 180.02562 * 24 23 21 26 26 N 1.34771 * 120.00180 * 180.02562 * 25 24 23 27 27 O 1.21286 * 119.99598 * 359.97438 * 25 24 23 28 28 C 1.38865 * 119.85922 * 0.02562 * 5 4 3 29 29 C 1.38116 * 119.93134 * 359.97438 * 28 5 4 30 30 H 1.08998 * 109.47467 * 90.00035 * 1 2 3 31 31 H 1.09008 * 109.46903 * 209.99931 * 1 2 3 32 32 H 1.08999 * 109.47290 * 329.99292 * 1 2 3 33 33 H 1.08005 * 119.96495 * 0.02562 * 3 2 1 34 34 H 1.08004 * 120.03169 * 180.27886 * 4 3 2 35 35 H 1.09000 * 109.47716 * 205.00616 * 7 6 5 36 36 H 1.09002 * 109.47240 * 325.00464 * 7 6 5 37 37 H 0.96998 * 120.00252 * 179.97438 * 11 10 8 38 38 H 1.08997 * 109.47191 * 298.42584 * 20 18 16 39 39 H 1.08997 * 109.47051 * 58.42811 * 20 18 16 40 40 H 1.08999 * 109.46413 * 178.42738 * 20 18 16 41 41 H 1.08994 * 109.47277 * 59.99978 * 22 21 18 42 42 H 1.08997 * 109.47221 * 180.02562 * 22 21 18 43 43 H 1.08997 * 109.47177 * 299.99642 * 22 21 18 44 44 H 1.08994 * 109.47131 * 310.00425 * 23 21 18 45 45 H 1.09005 * 109.47101 * 70.00283 * 23 21 18 46 46 H 1.09003 * 109.47529 * 299.99888 * 24 23 21 47 47 H 1.08997 * 109.47156 * 60.00011 * 24 23 21 48 48 H 0.97008 * 119.99764 * 359.97438 * 26 25 24 49 49 H 0.96997 * 120.00430 * 180.02562 * 26 25 24 50 50 H 1.08006 * 120.03427 * 179.97438 * 28 5 4 51 51 H 1.07996 * 119.96248 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 0.0052 5 6 4.2739 0.0001 0.0052 6 7 5.6731 0.0002 0.0100 7 6 6.4061 1.2596 -0.1405 8 6 6.5456 1.9237 1.2050 9 1 6.1294 1.4547 2.0843 10 6 7.2035 3.1305 1.3134 11 7 7.7099 3.7019 0.2426 12 14 7.3757 3.9539 2.9813 13 1 6.7238 3.1137 4.0178 14 1 8.8154 4.1150 3.3076 15 1 6.7243 5.2879 2.9443 16 6 6.3466 -1.1585 0.1531 17 8 5.7438 -2.2105 0.1840 18 6 7.8486 -1.1469 0.2748 19 1 8.2727 -0.5323 -0.5192 20 6 8.2456 -0.5686 1.6346 21 7 8.3599 -2.5191 0.1581 22 6 7.8277 -3.3721 1.2291 23 6 9.8289 -2.5348 0.1533 24 6 10.3226 -3.9348 -0.2171 25 6 11.8295 -3.9512 -0.2214 26 7 12.4902 -5.0867 -0.5223 27 8 12.4477 -2.9423 0.0451 28 6 3.5781 -1.2017 -0.0006 29 6 2.1970 -1.1983 -0.0058 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.6551 2.1328 0.0004 34 1 4.1162 2.1383 0.0098 35 1 7.3957 1.0574 -0.5502 36 1 5.8610 1.9188 -0.8162 37 1 8.1724 4.5511 0.3188 38 1 7.8904 0.4591 1.7102 39 1 7.7985 -1.1669 2.4284 40 1 9.3309 -0.5861 1.7339 41 1 6.7399 -3.3979 1.1663 42 1 8.2225 -4.3821 1.1193 43 1 8.1263 -2.9690 2.1968 44 1 10.1976 -1.8145 -0.5769 45 1 10.1983 -2.2696 1.1439 46 1 9.9539 -4.6552 0.5132 47 1 9.9531 -4.2001 -1.2076 48 1 11.9958 -5.8935 -0.7358 49 1 13.4601 -5.0974 -0.5248 50 1 4.1165 -2.1380 -0.0011 51 1 1.6554 -2.1326 -0.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286561687.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:27 Heat of formation + Delta-G solvation = -22.487695 kcal Electronic energy + Delta-G solvation = -31583.686163 eV Core-core repulsion = 27483.864244 eV Total energy + Delta-G solvation = -4099.821920 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.50885 -39.62519 -38.45212 -36.86416 -35.48974 -33.83211 -32.98264 -32.17922 -31.09914 -30.29863 -29.11293 -27.64794 -26.16927 -26.10751 -24.19983 -23.45272 -21.93305 -21.76801 -20.55657 -19.96299 -18.65099 -17.50618 -17.18363 -16.76807 -16.59650 -16.31996 -15.75498 -15.16203 -15.05910 -14.78012 -14.46678 -14.39821 -14.09413 -13.80625 -13.46836 -13.39522 -13.23142 -12.97848 -12.87117 -12.68276 -12.49602 -12.06996 -11.96007 -11.88949 -11.82860 -11.68010 -11.38424 -11.16446 -11.05249 -10.95537 -10.77158 -10.67810 -10.58977 -10.46477 -10.23884 -10.08013 -9.97594 -9.87749 -9.08820 -8.70328 -8.49517 -8.30291 -7.91540 -7.09056 -6.31802 -4.38527 1.86577 2.05390 2.52835 3.15441 3.20095 3.24517 3.25739 3.30501 3.61339 4.21449 4.35406 4.48375 4.76791 4.98758 5.00253 5.03793 5.16014 5.34319 5.39266 5.52241 5.60159 5.61345 5.64135 5.72184 5.73389 5.80877 5.82662 6.00303 6.02072 6.07809 6.15844 6.18817 6.29269 6.32495 6.40653 6.52145 6.57681 6.63934 6.78299 6.92214 6.98551 7.04023 7.06853 7.12433 7.20537 7.32516 7.33368 7.38209 7.61066 7.84867 7.86510 8.11595 8.13961 8.63901 8.80819 9.26199 10.73534 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.003616 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.066596 B = 7740.931900 C =10402.741045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.133 4.133 3 C -0.105 4.105 4 C -0.139 4.139 5 C 0.167 3.833 6 N -0.532 5.532 7 C 0.226 3.774 8 C -0.537 4.537 9 H 0.067 0.933 10 C 0.071 3.929 11 N -0.882 5.882 12 Si 0.893 3.107 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.281 1.281 16 C 0.529 3.471 17 O -0.530 6.530 18 C 0.077 3.923 19 H 0.109 0.891 20 C -0.209 4.209 21 N -0.524 5.524 22 C -0.002 4.002 23 C 0.068 3.932 24 C -0.138 4.138 25 C 0.517 3.483 26 N -0.860 5.860 27 O -0.541 6.541 28 C -0.177 4.177 29 C -0.108 4.108 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.140 0.860 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.268 0.732 38 H 0.129 0.871 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.108 0.892 42 H 0.056 0.944 43 H 0.022 0.978 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.094 0.906 47 H 0.103 0.897 48 H 0.401 0.599 49 H 0.399 0.601 50 H 0.179 0.821 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 -13.765 -1.720 13.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.134 4.134 3 C -0.124 4.124 4 C -0.160 4.160 5 C 0.071 3.929 6 N -0.251 5.251 7 C 0.107 3.893 8 C -0.575 4.575 9 H 0.085 0.915 10 C -0.134 4.134 11 N -0.519 5.519 12 Si 0.720 3.280 13 H -0.195 1.195 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.320 3.680 17 O -0.411 6.411 18 C -0.034 4.034 19 H 0.127 0.873 20 C -0.267 4.267 21 N -0.247 5.247 22 C -0.150 4.150 23 C -0.061 4.061 24 C -0.178 4.178 25 C 0.302 3.698 26 N -0.424 5.424 27 O -0.417 6.417 28 C -0.197 4.197 29 C -0.127 4.127 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.133 0.867 34 H 0.158 0.842 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.147 0.853 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.113 0.887 47 H 0.121 0.879 48 H 0.229 0.771 49 H 0.229 0.771 50 H 0.196 0.804 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.513 -13.547 -2.033 13.708 hybrid contribution 0.745 0.622 1.533 1.815 sum 0.233 -12.925 -0.500 12.937 Atomic orbital electron populations 1.20658 0.92189 1.01834 1.01363 1.19778 0.95370 0.93584 1.04636 1.20727 0.93534 0.96988 1.01103 1.21131 0.93964 0.97898 1.02958 1.18049 0.82686 0.94179 0.98007 1.45948 1.04102 1.09902 1.65146 1.19756 0.92263 0.78949 0.98362 1.21319 1.37112 1.05580 0.93528 0.91479 1.24915 0.94833 0.96619 0.97039 1.69915 1.35799 1.17836 1.28327 0.86492 0.78132 0.79583 0.83746 1.19462 1.20620 1.20646 1.20482 0.89837 0.82639 0.75066 1.90100 1.68447 1.31414 1.51125 1.21502 0.91672 0.89835 1.00376 0.87334 1.22887 1.01490 1.07436 0.94933 1.61996 1.06579 1.09083 1.47091 1.22938 1.04661 0.95793 0.91583 1.21812 0.87341 0.95296 1.01611 1.21641 0.90657 1.00467 1.05021 1.20800 0.90916 0.82859 0.75226 1.43911 1.11044 1.13281 1.74182 1.90776 1.70074 1.33098 1.47799 1.22763 0.94287 1.00312 1.02298 1.20882 0.94063 0.96683 1.01090 0.92128 0.92346 0.92267 0.86651 0.84243 0.93354 0.93711 0.92230 0.85322 0.93162 0.92437 0.87370 0.92519 0.95910 0.89990 0.93605 0.88749 0.87890 0.77103 0.77085 0.80441 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.01 36.01 0.36 -0.89 16 2 C -0.13 -2.11 5.88 -104.59 -0.62 -2.72 16 3 C -0.10 -1.78 9.69 -39.61 -0.38 -2.17 16 4 C -0.14 -2.73 9.04 -39.39 -0.36 -3.09 16 5 C 0.17 3.42 6.47 -83.70 -0.54 2.88 16 6 N -0.53 -11.14 2.69 -114.74 -0.31 -11.45 16 7 C 0.23 5.07 4.07 -5.20 -0.02 5.05 16 8 C -0.54 -12.90 5.82 -34.44 -0.20 -13.10 16 9 H 0.07 1.68 7.69 -52.49 -0.40 1.27 16 10 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.88 -22.91 13.29 55.43 0.74 -22.17 16 12 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 C 0.53 10.53 6.76 -10.98 -0.07 10.45 16 17 O -0.53 -10.67 9.92 5.56 0.06 -10.62 16 18 C 0.08 1.39 1.96 -68.86 -0.13 1.25 16 19 H 0.11 2.01 6.53 -51.93 -0.34 1.67 16 20 C -0.21 -3.86 8.35 37.16 0.31 -3.55 16 21 N -0.52 -8.20 4.62 -236.28 -1.09 -9.29 16 22 C 0.00 -0.03 8.57 60.06 0.51 0.48 16 23 C 0.07 0.96 3.69 -3.82 -0.01 0.95 16 24 C -0.14 -1.44 5.63 -27.88 -0.16 -1.60 16 25 C 0.52 5.85 8.10 -10.99 -0.09 5.76 16 26 N -0.86 -5.89 8.87 31.22 0.28 -5.62 16 27 O -0.54 -8.73 16.82 5.55 0.09 -8.64 16 28 C -0.18 -3.39 9.05 -39.39 -0.36 -3.75 16 29 C -0.11 -1.81 9.69 -39.61 -0.38 -2.19 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.64 8.09 -51.92 -0.42 0.22 16 32 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 34 H 0.14 2.91 6.16 -52.48 -0.32 2.59 16 35 H 0.05 1.11 6.00 -51.93 -0.31 0.80 16 36 H 0.04 1.07 6.83 -51.93 -0.35 0.71 16 37 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.13 2.73 3.99 -51.93 -0.21 2.52 16 39 H 0.05 0.90 6.47 -51.93 -0.34 0.57 16 40 H 0.06 1.00 6.67 -51.93 -0.35 0.65 16 41 H 0.11 1.83 5.08 -51.93 -0.26 1.56 16 42 H 0.06 0.68 6.30 -51.93 -0.33 0.36 16 43 H 0.02 0.34 6.32 -51.93 -0.33 0.01 16 44 H 0.08 1.25 7.96 -51.93 -0.41 0.83 16 45 H 0.05 0.70 6.86 -51.93 -0.36 0.34 16 46 H 0.09 0.84 6.47 -51.93 -0.34 0.50 16 47 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.40 1.49 8.83 -40.82 -0.36 1.13 16 49 H 0.40 2.41 8.93 -40.82 -0.36 2.05 16 50 H 0.18 3.53 4.54 -56.19 -0.25 3.28 16 51 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -29.21 393.79 -8.85 -38.07 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -7.29 Total: 13.64 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.24 Total: -4.58 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.39 Total: -48.53 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.15 Total: -19.26 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.21 -8.85 -38.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286561687.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.581 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds