Wall clock time and date at job start Wed Apr 1 2020 05:06:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.38286 * 119.92628 * 2 1
4 4 C 1.38113 * 120.06887 * 179.74869 * 3 2 1
5 5 C 1.38874 * 119.92840 * 0.25235 * 4 3 2
6 6 N 1.39920 * 120.06624 * 179.97438 * 5 4 3
7 7 C 1.46495 * 120.00530 * 352.95791 * 6 5 4
8 8 C 1.50698 * 109.47514 * 85.00405 * 7 6 5
9 9 H 1.08002 * 119.99559 * 359.97438 * 8 7 6
10 10 C 1.37873 * 120.00395 * 180.02562 * 8 7 6
11 11 N 1.31513 * 120.00119 * 359.97438 * 10 8 7
12 12 Si 1.86804 * 120.00044 * 179.97438 * 10 8 7
13 13 H 1.48500 * 109.46980 * 359.97438 * 12 10 8
14 14 H 1.48501 * 109.47314 * 119.99708 * 12 10 8
15 15 H 1.48499 * 109.46976 * 239.99379 * 12 10 8
16 16 C 1.34783 * 119.99690 * 172.95435 * 6 5 4
17 17 O 1.21282 * 120.00175 * 5.15178 * 16 6 5
18 18 C 1.50699 * 119.99982 * 185.14692 * 16 6 5
19 19 H 1.09003 * 109.47235 * 310.87882 * 18 16 6
20 20 C 1.53010 * 109.46781 * 70.87586 * 18 16 6
21 21 N 1.46901 * 109.47140 * 190.87456 * 18 16 6
22 22 C 1.46898 * 110.99821 * 298.95649 * 21 18 16
23 23 C 1.46906 * 110.99722 * 175.00174 * 21 18 16
24 24 C 1.52996 * 109.46640 * 189.99934 * 23 21 18
25 25 C 1.50706 * 109.46985 * 180.02562 * 24 23 21
26 26 N 1.34771 * 120.00180 * 180.02562 * 25 24 23
27 27 O 1.21286 * 119.99598 * 359.97438 * 25 24 23
28 28 C 1.38865 * 119.85922 * 0.02562 * 5 4 3
29 29 C 1.38116 * 119.93134 * 359.97438 * 28 5 4
30 30 H 1.08998 * 109.47467 * 90.00035 * 1 2 3
31 31 H 1.09008 * 109.46903 * 209.99931 * 1 2 3
32 32 H 1.08999 * 109.47290 * 329.99292 * 1 2 3
33 33 H 1.08005 * 119.96495 * 0.02562 * 3 2 1
34 34 H 1.08004 * 120.03169 * 180.27886 * 4 3 2
35 35 H 1.09000 * 109.47716 * 205.00616 * 7 6 5
36 36 H 1.09002 * 109.47240 * 325.00464 * 7 6 5
37 37 H 0.96998 * 120.00252 * 179.97438 * 11 10 8
38 38 H 1.08997 * 109.47191 * 298.42584 * 20 18 16
39 39 H 1.08997 * 109.47051 * 58.42811 * 20 18 16
40 40 H 1.08999 * 109.46413 * 178.42738 * 20 18 16
41 41 H 1.08994 * 109.47277 * 59.99978 * 22 21 18
42 42 H 1.08997 * 109.47221 * 180.02562 * 22 21 18
43 43 H 1.08997 * 109.47177 * 299.99642 * 22 21 18
44 44 H 1.08994 * 109.47131 * 310.00425 * 23 21 18
45 45 H 1.09005 * 109.47101 * 70.00283 * 23 21 18
46 46 H 1.09003 * 109.47529 * 299.99888 * 24 23 21
47 47 H 1.08997 * 109.47156 * 60.00011 * 24 23 21
48 48 H 0.97008 * 119.99764 * 359.97438 * 26 25 24
49 49 H 0.96997 * 120.00430 * 180.02562 * 26 25 24
50 50 H 1.08006 * 120.03427 * 179.97438 * 28 5 4
51 51 H 1.07996 * 119.96248 * 180.02562 * 29 28 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1969 1.1985 0.0000
4 6 3.5780 1.2019 0.0052
5 6 4.2739 0.0001 0.0052
6 7 5.6731 0.0002 0.0100
7 6 6.4061 1.2596 -0.1405
8 6 6.5456 1.9237 1.2050
9 1 6.1294 1.4547 2.0843
10 6 7.2035 3.1305 1.3134
11 7 7.7099 3.7019 0.2426
12 14 7.3757 3.9539 2.9813
13 1 6.7238 3.1137 4.0178
14 1 8.8154 4.1150 3.3076
15 1 6.7243 5.2879 2.9443
16 6 6.3466 -1.1585 0.1531
17 8 5.7438 -2.2105 0.1840
18 6 7.8486 -1.1469 0.2748
19 1 8.2727 -0.5323 -0.5192
20 6 8.2456 -0.5686 1.6346
21 7 8.3599 -2.5191 0.1581
22 6 7.8277 -3.3721 1.2291
23 6 9.8289 -2.5348 0.1533
24 6 10.3226 -3.9348 -0.2171
25 6 11.8295 -3.9512 -0.2214
26 7 12.4902 -5.0867 -0.5223
27 8 12.4477 -2.9423 0.0451
28 6 3.5781 -1.2017 -0.0006
29 6 2.1970 -1.1983 -0.0058
30 1 -0.3634 0.0000 -1.0276
31 1 -0.3633 -0.8901 0.5139
32 1 -0.3634 0.8899 0.5139
33 1 1.6551 2.1328 0.0004
34 1 4.1162 2.1383 0.0098
35 1 7.3957 1.0574 -0.5502
36 1 5.8610 1.9188 -0.8162
37 1 8.1724 4.5511 0.3188
38 1 7.8904 0.4591 1.7102
39 1 7.7985 -1.1669 2.4284
40 1 9.3309 -0.5861 1.7339
41 1 6.7399 -3.3979 1.1663
42 1 8.2225 -4.3821 1.1193
43 1 8.1263 -2.9690 2.1968
44 1 10.1976 -1.8145 -0.5769
45 1 10.1983 -2.2696 1.1439
46 1 9.9539 -4.6552 0.5132
47 1 9.9531 -4.2001 -1.2076
48 1 11.9958 -5.8935 -0.7358
49 1 13.4601 -5.0974 -0.5248
50 1 4.1165 -2.1380 -0.0011
51 1 1.6554 -2.1326 -0.0100
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000286561687.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:06:26
Heat of formation + Delta-G solvation = -42.487232 kcal
Electronic energy + Delta-G solvation = -31584.553408 eV
Core-core repulsion = 27483.864244 eV
Total energy + Delta-G solvation = -4100.689165 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.02826 -40.60847 -39.80050 -38.18943 -37.12643 -34.76573 -34.64809 -33.51930
-32.31689 -31.72468 -30.36636 -29.44534 -27.50013 -27.30119 -25.52311 -25.24283
-23.31170 -23.08280 -21.79331 -21.01502 -20.16118 -18.78461 -18.46223 -18.23889
-17.95656 -17.60167 -16.76390 -16.63487 -16.41893 -16.34644 -15.97963 -15.81266
-15.30704 -15.05819 -14.80838 -14.67481 -14.45191 -14.40138 -14.31269 -14.15111
-13.78462 -13.60062 -13.37924 -13.18105 -12.97115 -12.91727 -12.86305 -12.71250
-12.68631 -12.52015 -12.21958 -12.13399 -12.01902 -11.84714 -11.80991 -11.69218
-11.05012 -10.71005 -10.63254 -10.62379 -9.97958 -9.72757 -9.24909 -8.62928
-8.22116 -6.35639 0.43701 0.62493 1.36982 1.41707 1.50367 1.65921
1.67983 1.95783 2.36479 2.55382 3.03581 3.04224 3.17166 3.48739
3.81877 4.03502 4.08997 4.12714 4.15874 4.17514 4.34214 4.34485
4.46614 4.51068 4.56272 4.62333 4.67994 4.70746 4.79988 4.89225
4.91245 4.93801 4.95975 4.99106 5.00335 5.12782 5.22517 5.26288
5.36008 5.45994 5.53002 5.61553 5.66033 5.81052 5.88237 5.92653
5.93614 5.97285 6.10675 6.37823 6.48457 6.49260 6.73783 7.19247
7.32030 7.38528 8.80464
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.008677 B = 0.003616 C = 0.002691
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3226.066596 B = 7740.931900 C =10402.741045
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.101 4.101
2 C -0.124 4.124
3 C -0.106 4.106
4 C -0.158 4.158
5 C 0.135 3.865
6 N -0.539 5.539
7 C 0.244 3.756
8 C -0.527 4.527
9 H 0.054 0.946
10 C 0.032 3.968
11 N -0.912 5.912
12 Si 0.947 3.053
13 H -0.271 1.271
14 H -0.278 1.278
15 H -0.278 1.278
16 C 0.523 3.477
17 O -0.532 6.532
18 C 0.082 3.918
19 H 0.098 0.902
20 C -0.197 4.197
21 N -0.521 5.521
22 C 0.001 3.999
23 C 0.069 3.931
24 C -0.127 4.127
25 C 0.516 3.484
26 N -0.835 5.835
27 O -0.598 6.598
28 C -0.189 4.189
29 C -0.107 4.107
30 H 0.077 0.923
31 H 0.075 0.925
32 H 0.071 0.929
33 H 0.139 0.861
34 H 0.116 0.884
35 H 0.039 0.961
36 H 0.025 0.975
37 H 0.269 0.731
38 H 0.102 0.898
39 H 0.052 0.948
40 H 0.064 0.936
41 H 0.088 0.912
42 H 0.091 0.909
43 H 0.019 0.981
44 H 0.064 0.936
45 H 0.032 0.968
46 H 0.119 0.881
47 H 0.121 0.879
48 H 0.420 0.580
49 H 0.406 0.594
50 H 0.171 0.829
51 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.944 -15.964 -1.364 16.140
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.125 4.125
3 C -0.125 4.125
4 C -0.179 4.179
5 C 0.040 3.960
6 N -0.258 5.258
7 C 0.124 3.876
8 C -0.565 4.565
9 H 0.072 0.928
10 C -0.170 4.170
11 N -0.550 5.550
12 Si 0.772 3.228
13 H -0.196 1.196
14 H -0.204 1.204
15 H -0.203 1.203
16 C 0.315 3.685
17 O -0.413 6.413
18 C -0.030 4.030
19 H 0.115 0.885
20 C -0.256 4.256
21 N -0.245 5.245
22 C -0.147 4.147
23 C -0.059 4.059
24 C -0.167 4.167
25 C 0.302 3.698
26 N -0.399 5.399
27 O -0.479 6.479
28 C -0.208 4.208
29 C -0.125 4.125
30 H 0.095 0.905
31 H 0.094 0.906
32 H 0.090 0.910
33 H 0.157 0.843
34 H 0.134 0.866
35 H 0.057 0.943
36 H 0.043 0.957
37 H 0.079 0.921
38 H 0.120 0.880
39 H 0.071 0.929
40 H 0.083 0.917
41 H 0.106 0.894
42 H 0.109 0.891
43 H 0.037 0.963
44 H 0.083 0.917
45 H 0.051 0.949
46 H 0.137 0.863
47 H 0.139 0.861
48 H 0.251 0.749
49 H 0.238 0.762
50 H 0.187 0.813
51 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -1.997 -15.823 -1.690 16.038
hybrid contribution 1.107 1.197 1.387 2.141
sum -0.890 -14.626 -0.303 14.656
Atomic orbital electron populations
1.20729 0.88815 1.03376 1.02865 1.20243 0.97730 0.92550 1.02023
1.21039 0.92461 0.98824 1.00133 1.21088 0.95333 0.96730 1.04728
1.18338 0.82478 0.95190 0.99985 1.45893 1.04634 1.09482 1.65778
1.19362 0.91582 0.79454 0.97220 1.21307 1.36255 1.05451 0.93532
0.92759 1.25494 0.94755 0.97155 0.99566 1.69993 1.36876 1.18312
1.29836 0.85666 0.77988 0.78633 0.80471 1.19550 1.20373 1.20340
1.20773 0.90499 0.82359 0.74916 1.90106 1.68769 1.31199 1.51242
1.21376 0.90604 0.91437 0.99566 0.88472 1.22701 1.01776 1.05646
0.95457 1.62041 1.07497 1.07445 1.47482 1.22911 1.03463 0.97290
0.90998 1.21794 0.86081 0.97595 1.00463 1.21563 0.90186 0.98314
1.06661 1.20917 0.91192 0.83015 0.74708 1.43687 1.11567 1.12725
1.71962 1.90764 1.71033 1.35323 1.50787 1.22754 0.95580 0.99270
1.03195 1.21239 0.93108 0.98468 0.99707 0.90479 0.90647 0.90996
0.84339 0.86552 0.94269 0.95651 0.92145 0.88019 0.92880 0.91745
0.89374 0.89087 0.96275 0.91736 0.94945 0.86325 0.86091 0.74876
0.76248 0.81289 0.83969
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -2.04 10.01 71.24 0.71 -1.32 16
2 C -0.12 -3.64 5.88 -19.84 -0.12 -3.76 16
3 C -0.11 -3.50 9.69 22.25 0.22 -3.29 16
4 C -0.16 -6.41 9.04 22.39 0.20 -6.21 16
5 C 0.14 5.72 6.47 38.15 0.25 5.97 16
6 N -0.54 -23.66 2.69 -635.32 -1.71 -25.37 16
7 C 0.24 11.64 4.07 85.63 0.35 11.99 16
8 C -0.53 -26.46 5.82 25.60 0.15 -26.31 16
9 H 0.05 2.83 7.69 -2.91 -0.02 2.81 16
10 C 0.03 1.63 5.46 84.65 0.46 2.10 16
11 N -0.91 -48.97 13.29 21.45 0.28 -48.68 16
12 Si 0.95 41.35 29.54 68.60 2.03 43.37 16
13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16
14 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16
15 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16
16 C 0.52 21.56 6.76 87.66 0.59 22.15 16
17 O -0.53 -21.78 9.92 -3.04 -0.03 -21.81 16
18 C 0.08 3.05 1.96 44.17 0.09 3.14 16
19 H 0.10 3.83 6.53 -2.39 -0.02 3.82 16
20 C -0.20 -7.55 8.35 71.99 0.60 -6.95 16
21 N -0.52 -16.21 4.62 -901.46 -4.16 -20.38 16
22 C 0.00 0.02 8.57 127.69 1.09 1.11 16
23 C 0.07 1.94 3.69 86.30 0.32 2.26 16
24 C -0.13 -2.41 5.63 29.85 0.17 -2.24 16
25 C 0.52 10.96 8.10 87.66 0.71 11.67 16
26 N -0.84 -9.41 8.87 -173.53 -1.54 -10.95 16
27 O -0.60 -19.40 16.82 -3.05 -0.05 -19.45 16
28 C -0.19 -7.22 9.05 22.39 0.20 -7.02 16
29 C -0.11 -3.35 9.69 22.25 0.22 -3.14 16
30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
31 H 0.07 1.30 8.09 -2.38 -0.02 1.28 16
32 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16
33 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16
34 H 0.12 5.17 6.16 -2.91 -0.02 5.16 16
35 H 0.04 1.93 6.00 -2.39 -0.01 1.92 16
36 H 0.03 1.30 6.83 -2.39 -0.02 1.29 16
37 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16
38 H 0.10 4.51 3.99 -2.39 -0.01 4.50 16
39 H 0.05 1.95 6.47 -2.39 -0.02 1.94 16
40 H 0.06 2.33 6.67 -2.39 -0.02 2.31 16
41 H 0.09 2.92 5.08 -2.39 -0.01 2.91 16
42 H 0.09 1.93 6.30 -2.39 -0.02 1.91 16
43 H 0.02 0.55 6.32 -2.39 -0.02 0.53 16
44 H 0.06 2.03 7.96 -2.39 -0.02 2.01 16
45 H 0.03 1.00 6.86 -2.38 -0.02 0.98 16
46 H 0.12 1.68 6.47 -2.39 -0.02 1.67 16
47 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16
48 H 0.42 1.71 8.83 -92.70 -0.82 0.89 16
49 H 0.41 4.04 8.93 -92.71 -0.83 3.21 16
50 H 0.17 6.76 4.54 -61.56 -0.28 6.48 16
51 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16
Total: -1.00 -66.34 393.79 0.11 -66.23
By element:
Atomic # 1 Polarization: 37.81 SS G_CDS: -0.92 Total: 36.89 kcal
Atomic # 6 Polarization: -6.06 SS G_CDS: 6.21 Total: 0.15 kcal
Atomic # 7 Polarization: -98.25 SS G_CDS: -7.12 Total: -105.38 kcal
Atomic # 8 Polarization: -41.18 SS G_CDS: -0.08 Total: -41.26 kcal
Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal
Total: -66.34 0.11 -66.23 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000286561687.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.742 kcal
(2) G-P(sol) polarization free energy of solvation -66.340 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.597 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.487 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds