Wall clock time and date at job start Wed Apr 1 2020 05:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38286 * 119.92628 * 2 1 4 4 C 1.38113 * 120.06887 * 179.74869 * 3 2 1 5 5 C 1.38874 * 119.92840 * 0.25235 * 4 3 2 6 6 N 1.39920 * 120.06624 * 179.97438 * 5 4 3 7 7 C 1.46495 * 120.00530 * 352.95791 * 6 5 4 8 8 C 1.50698 * 109.47514 * 85.00405 * 7 6 5 9 9 H 1.08002 * 119.99559 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00395 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00119 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00044 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46980 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47314 * 119.99708 * 12 10 8 15 15 H 1.48499 * 109.46976 * 239.99379 * 12 10 8 16 16 C 1.34783 * 119.99690 * 172.95435 * 6 5 4 17 17 O 1.21282 * 120.00175 * 5.15178 * 16 6 5 18 18 C 1.50699 * 119.99982 * 185.14692 * 16 6 5 19 19 H 1.09003 * 109.47235 * 310.87882 * 18 16 6 20 20 C 1.53010 * 109.46781 * 70.87586 * 18 16 6 21 21 N 1.46901 * 109.47140 * 190.87456 * 18 16 6 22 22 C 1.46898 * 110.99821 * 298.95649 * 21 18 16 23 23 C 1.46906 * 110.99722 * 175.00174 * 21 18 16 24 24 C 1.52996 * 109.46640 * 189.99934 * 23 21 18 25 25 C 1.50706 * 109.46985 * 180.02562 * 24 23 21 26 26 N 1.34771 * 120.00180 * 180.02562 * 25 24 23 27 27 O 1.21286 * 119.99598 * 359.97438 * 25 24 23 28 28 C 1.38865 * 119.85922 * 0.02562 * 5 4 3 29 29 C 1.38116 * 119.93134 * 359.97438 * 28 5 4 30 30 H 1.08998 * 109.47467 * 90.00035 * 1 2 3 31 31 H 1.09008 * 109.46903 * 209.99931 * 1 2 3 32 32 H 1.08999 * 109.47290 * 329.99292 * 1 2 3 33 33 H 1.08005 * 119.96495 * 0.02562 * 3 2 1 34 34 H 1.08004 * 120.03169 * 180.27886 * 4 3 2 35 35 H 1.09000 * 109.47716 * 205.00616 * 7 6 5 36 36 H 1.09002 * 109.47240 * 325.00464 * 7 6 5 37 37 H 0.96998 * 120.00252 * 179.97438 * 11 10 8 38 38 H 1.08997 * 109.47191 * 298.42584 * 20 18 16 39 39 H 1.08997 * 109.47051 * 58.42811 * 20 18 16 40 40 H 1.08999 * 109.46413 * 178.42738 * 20 18 16 41 41 H 1.08994 * 109.47277 * 59.99978 * 22 21 18 42 42 H 1.08997 * 109.47221 * 180.02562 * 22 21 18 43 43 H 1.08997 * 109.47177 * 299.99642 * 22 21 18 44 44 H 1.08994 * 109.47131 * 310.00425 * 23 21 18 45 45 H 1.09005 * 109.47101 * 70.00283 * 23 21 18 46 46 H 1.09003 * 109.47529 * 299.99888 * 24 23 21 47 47 H 1.08997 * 109.47156 * 60.00011 * 24 23 21 48 48 H 0.97008 * 119.99764 * 359.97438 * 26 25 24 49 49 H 0.96997 * 120.00430 * 180.02562 * 26 25 24 50 50 H 1.08006 * 120.03427 * 179.97438 * 28 5 4 51 51 H 1.07996 * 119.96248 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2019 0.0052 5 6 4.2739 0.0001 0.0052 6 7 5.6731 0.0002 0.0100 7 6 6.4061 1.2596 -0.1405 8 6 6.5456 1.9237 1.2050 9 1 6.1294 1.4547 2.0843 10 6 7.2035 3.1305 1.3134 11 7 7.7099 3.7019 0.2426 12 14 7.3757 3.9539 2.9813 13 1 6.7238 3.1137 4.0178 14 1 8.8154 4.1150 3.3076 15 1 6.7243 5.2879 2.9443 16 6 6.3466 -1.1585 0.1531 17 8 5.7438 -2.2105 0.1840 18 6 7.8486 -1.1469 0.2748 19 1 8.2727 -0.5323 -0.5192 20 6 8.2456 -0.5686 1.6346 21 7 8.3599 -2.5191 0.1581 22 6 7.8277 -3.3721 1.2291 23 6 9.8289 -2.5348 0.1533 24 6 10.3226 -3.9348 -0.2171 25 6 11.8295 -3.9512 -0.2214 26 7 12.4902 -5.0867 -0.5223 27 8 12.4477 -2.9423 0.0451 28 6 3.5781 -1.2017 -0.0006 29 6 2.1970 -1.1983 -0.0058 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.6551 2.1328 0.0004 34 1 4.1162 2.1383 0.0098 35 1 7.3957 1.0574 -0.5502 36 1 5.8610 1.9188 -0.8162 37 1 8.1724 4.5511 0.3188 38 1 7.8904 0.4591 1.7102 39 1 7.7985 -1.1669 2.4284 40 1 9.3309 -0.5861 1.7339 41 1 6.7399 -3.3979 1.1663 42 1 8.2225 -4.3821 1.1193 43 1 8.1263 -2.9690 2.1968 44 1 10.1976 -1.8145 -0.5769 45 1 10.1983 -2.2696 1.1439 46 1 9.9539 -4.6552 0.5132 47 1 9.9531 -4.2001 -1.2076 48 1 11.9958 -5.8935 -0.7358 49 1 13.4601 -5.0974 -0.5248 50 1 4.1165 -2.1380 -0.0011 51 1 1.6554 -2.1326 -0.0100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286561687.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:26 Heat of formation + Delta-G solvation = -42.487232 kcal Electronic energy + Delta-G solvation = -31584.553408 eV Core-core repulsion = 27483.864244 eV Total energy + Delta-G solvation = -4100.689165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02826 -40.60847 -39.80050 -38.18943 -37.12643 -34.76573 -34.64809 -33.51930 -32.31689 -31.72468 -30.36636 -29.44534 -27.50013 -27.30119 -25.52311 -25.24283 -23.31170 -23.08280 -21.79331 -21.01502 -20.16118 -18.78461 -18.46223 -18.23889 -17.95656 -17.60167 -16.76390 -16.63487 -16.41893 -16.34644 -15.97963 -15.81266 -15.30704 -15.05819 -14.80838 -14.67481 -14.45191 -14.40138 -14.31269 -14.15111 -13.78462 -13.60062 -13.37924 -13.18105 -12.97115 -12.91727 -12.86305 -12.71250 -12.68631 -12.52015 -12.21958 -12.13399 -12.01902 -11.84714 -11.80991 -11.69218 -11.05012 -10.71005 -10.63254 -10.62379 -9.97958 -9.72757 -9.24909 -8.62928 -8.22116 -6.35639 0.43701 0.62493 1.36982 1.41707 1.50367 1.65921 1.67983 1.95783 2.36479 2.55382 3.03581 3.04224 3.17166 3.48739 3.81877 4.03502 4.08997 4.12714 4.15874 4.17514 4.34214 4.34485 4.46614 4.51068 4.56272 4.62333 4.67994 4.70746 4.79988 4.89225 4.91245 4.93801 4.95975 4.99106 5.00335 5.12782 5.22517 5.26288 5.36008 5.45994 5.53002 5.61553 5.66033 5.81052 5.88237 5.92653 5.93614 5.97285 6.10675 6.37823 6.48457 6.49260 6.73783 7.19247 7.32030 7.38528 8.80464 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.003616 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.066596 B = 7740.931900 C =10402.741045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.124 4.124 3 C -0.106 4.106 4 C -0.158 4.158 5 C 0.135 3.865 6 N -0.539 5.539 7 C 0.244 3.756 8 C -0.527 4.527 9 H 0.054 0.946 10 C 0.032 3.968 11 N -0.912 5.912 12 Si 0.947 3.053 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.278 1.278 16 C 0.523 3.477 17 O -0.532 6.532 18 C 0.082 3.918 19 H 0.098 0.902 20 C -0.197 4.197 21 N -0.521 5.521 22 C 0.001 3.999 23 C 0.069 3.931 24 C -0.127 4.127 25 C 0.516 3.484 26 N -0.835 5.835 27 O -0.598 6.598 28 C -0.189 4.189 29 C -0.107 4.107 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.139 0.861 34 H 0.116 0.884 35 H 0.039 0.961 36 H 0.025 0.975 37 H 0.269 0.731 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.019 0.981 44 H 0.064 0.936 45 H 0.032 0.968 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.420 0.580 49 H 0.406 0.594 50 H 0.171 0.829 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.944 -15.964 -1.364 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.125 4.125 3 C -0.125 4.125 4 C -0.179 4.179 5 C 0.040 3.960 6 N -0.258 5.258 7 C 0.124 3.876 8 C -0.565 4.565 9 H 0.072 0.928 10 C -0.170 4.170 11 N -0.550 5.550 12 Si 0.772 3.228 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.203 1.203 16 C 0.315 3.685 17 O -0.413 6.413 18 C -0.030 4.030 19 H 0.115 0.885 20 C -0.256 4.256 21 N -0.245 5.245 22 C -0.147 4.147 23 C -0.059 4.059 24 C -0.167 4.167 25 C 0.302 3.698 26 N -0.399 5.399 27 O -0.479 6.479 28 C -0.208 4.208 29 C -0.125 4.125 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.134 0.866 35 H 0.057 0.943 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.037 0.963 44 H 0.083 0.917 45 H 0.051 0.949 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.251 0.749 49 H 0.238 0.762 50 H 0.187 0.813 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.997 -15.823 -1.690 16.038 hybrid contribution 1.107 1.197 1.387 2.141 sum -0.890 -14.626 -0.303 14.656 Atomic orbital electron populations 1.20729 0.88815 1.03376 1.02865 1.20243 0.97730 0.92550 1.02023 1.21039 0.92461 0.98824 1.00133 1.21088 0.95333 0.96730 1.04728 1.18338 0.82478 0.95190 0.99985 1.45893 1.04634 1.09482 1.65778 1.19362 0.91582 0.79454 0.97220 1.21307 1.36255 1.05451 0.93532 0.92759 1.25494 0.94755 0.97155 0.99566 1.69993 1.36876 1.18312 1.29836 0.85666 0.77988 0.78633 0.80471 1.19550 1.20373 1.20340 1.20773 0.90499 0.82359 0.74916 1.90106 1.68769 1.31199 1.51242 1.21376 0.90604 0.91437 0.99566 0.88472 1.22701 1.01776 1.05646 0.95457 1.62041 1.07497 1.07445 1.47482 1.22911 1.03463 0.97290 0.90998 1.21794 0.86081 0.97595 1.00463 1.21563 0.90186 0.98314 1.06661 1.20917 0.91192 0.83015 0.74708 1.43687 1.11567 1.12725 1.71962 1.90764 1.71033 1.35323 1.50787 1.22754 0.95580 0.99270 1.03195 1.21239 0.93108 0.98468 0.99707 0.90479 0.90647 0.90996 0.84339 0.86552 0.94269 0.95651 0.92145 0.88019 0.92880 0.91745 0.89374 0.89087 0.96275 0.91736 0.94945 0.86325 0.86091 0.74876 0.76248 0.81289 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 10.01 71.24 0.71 -1.32 16 2 C -0.12 -3.64 5.88 -19.84 -0.12 -3.76 16 3 C -0.11 -3.50 9.69 22.25 0.22 -3.29 16 4 C -0.16 -6.41 9.04 22.39 0.20 -6.21 16 5 C 0.14 5.72 6.47 38.15 0.25 5.97 16 6 N -0.54 -23.66 2.69 -635.32 -1.71 -25.37 16 7 C 0.24 11.64 4.07 85.63 0.35 11.99 16 8 C -0.53 -26.46 5.82 25.60 0.15 -26.31 16 9 H 0.05 2.83 7.69 -2.91 -0.02 2.81 16 10 C 0.03 1.63 5.46 84.65 0.46 2.10 16 11 N -0.91 -48.97 13.29 21.45 0.28 -48.68 16 12 Si 0.95 41.35 29.54 68.60 2.03 43.37 16 13 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 15 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 16 C 0.52 21.56 6.76 87.66 0.59 22.15 16 17 O -0.53 -21.78 9.92 -3.04 -0.03 -21.81 16 18 C 0.08 3.05 1.96 44.17 0.09 3.14 16 19 H 0.10 3.83 6.53 -2.39 -0.02 3.82 16 20 C -0.20 -7.55 8.35 71.99 0.60 -6.95 16 21 N -0.52 -16.21 4.62 -901.46 -4.16 -20.38 16 22 C 0.00 0.02 8.57 127.69 1.09 1.11 16 23 C 0.07 1.94 3.69 86.30 0.32 2.26 16 24 C -0.13 -2.41 5.63 29.85 0.17 -2.24 16 25 C 0.52 10.96 8.10 87.66 0.71 11.67 16 26 N -0.84 -9.41 8.87 -173.53 -1.54 -10.95 16 27 O -0.60 -19.40 16.82 -3.05 -0.05 -19.45 16 28 C -0.19 -7.22 9.05 22.39 0.20 -7.02 16 29 C -0.11 -3.35 9.69 22.25 0.22 -3.14 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.30 8.09 -2.38 -0.02 1.28 16 32 H 0.07 1.30 8.08 -2.39 -0.02 1.28 16 33 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 34 H 0.12 5.17 6.16 -2.91 -0.02 5.16 16 35 H 0.04 1.93 6.00 -2.39 -0.01 1.92 16 36 H 0.03 1.30 6.83 -2.39 -0.02 1.29 16 37 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 38 H 0.10 4.51 3.99 -2.39 -0.01 4.50 16 39 H 0.05 1.95 6.47 -2.39 -0.02 1.94 16 40 H 0.06 2.33 6.67 -2.39 -0.02 2.31 16 41 H 0.09 2.92 5.08 -2.39 -0.01 2.91 16 42 H 0.09 1.93 6.30 -2.39 -0.02 1.91 16 43 H 0.02 0.55 6.32 -2.39 -0.02 0.53 16 44 H 0.06 2.03 7.96 -2.39 -0.02 2.01 16 45 H 0.03 1.00 6.86 -2.38 -0.02 0.98 16 46 H 0.12 1.68 6.47 -2.39 -0.02 1.67 16 47 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.42 1.71 8.83 -92.70 -0.82 0.89 16 49 H 0.41 4.04 8.93 -92.71 -0.83 3.21 16 50 H 0.17 6.76 4.54 -61.56 -0.28 6.48 16 51 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -66.34 393.79 0.11 -66.23 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: -0.92 Total: 36.89 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 6.21 Total: 0.15 kcal Atomic # 7 Polarization: -98.25 SS G_CDS: -7.12 Total: -105.38 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -0.08 Total: -41.26 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -66.34 0.11 -66.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286561687.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.742 kcal (2) G-P(sol) polarization free energy of solvation -66.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds