Wall clock time and date at job start Wed Apr 1 2020 05:07:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38680 * 120.11745 * 2 1
4 4 N 1.39707 * 120.00165 * 0.02562 * 3 2 1
5 5 C 1.46501 * 120.00090 * 179.97438 * 4 3 2
6 6 H 1.08991 * 109.47094 * 324.99646 * 5 4 3
7 7 C 1.53009 * 109.46952 * 84.99718 * 5 4 3
8 8 C 1.53006 * 109.46994 * 204.99589 * 5 4 3
9 9 C 1.52997 * 109.46702 * 60.00301 * 8 5 4
10 10 C 1.53002 * 109.46687 * 179.97438 * 8 5 4
11 11 C 1.38977 * 119.99264 * 179.69931 * 3 2 1
12 12 C 1.38244 * 120.22210 * 0.53431 * 11 3 2
13 13 C 1.37985 * 120.22823 * 359.48643 * 12 11 3
14 14 C 1.39460 * 120.10989 * 179.97438 * 2 1 3
15 15 C 1.47854 * 120.10984 * 0.02562 * 14 2 1
16 16 O 1.21550 * 120.00239 * 353.83092 * 15 14 2
17 17 N 1.34780 * 119.99807 * 173.82754 * 15 14 2
18 18 C 1.46505 * 120.00027 * 180.02562 * 17 15 14
19 19 C 1.50695 * 109.47064 * 180.02562 * 18 17 15
20 20 O 1.21291 * 120.00155 * 359.97438 * 19 18 17
21 21 N 1.34776 * 119.99574 * 180.02562 * 19 18 17
22 22 C 1.37102 * 119.99676 * 179.97438 * 21 19 18
23 23 H 1.07996 * 120.00008 * 359.97438 * 22 21 19
24 24 C 1.38950 * 119.99813 * 180.02562 * 22 21 19
25 25 N 1.31407 * 120.00354 * 359.97438 * 24 22 21
26 26 Si 1.86803 * 119.99836 * 179.97438 * 24 22 21
27 27 H 1.48495 * 109.47218 * 359.97438 * 26 24 22
28 28 H 1.48507 * 109.47015 * 119.99832 * 26 24 22
29 29 H 1.48500 * 109.47013 * 239.99721 * 26 24 22
30 30 H 1.08994 * 109.47165 * 263.51149 * 1 2 3
31 31 H 1.09003 * 109.46625 * 23.51112 * 1 2 3
32 32 H 1.09005 * 109.46841 * 143.50831 * 1 2 3
33 33 H 0.97001 * 120.00116 * 359.97438 * 4 3 2
34 34 H 1.08999 * 109.46973 * 60.00034 * 7 5 4
35 35 H 1.09002 * 109.46847 * 179.97438 * 7 5 4
36 36 H 1.08994 * 109.46964 * 299.99989 * 7 5 4
37 37 H 1.08997 * 109.47017 * 299.99581 * 8 5 4
38 38 H 1.09008 * 109.46388 * 179.97438 * 9 8 5
39 39 H 1.08999 * 109.47231 * 299.99027 * 9 8 5
40 40 H 1.08991 * 109.47544 * 59.99845 * 9 8 5
41 41 H 1.09007 * 109.46704 * 60.00640 * 10 8 5
42 42 H 1.09000 * 109.46560 * 179.97438 * 10 8 5
43 43 H 1.08999 * 109.47501 * 300.00298 * 10 8 5
44 44 H 1.07999 * 119.89050 * 180.27523 * 11 3 2
45 45 H 1.08002 * 119.88774 * 179.76382 * 12 11 3
46 46 H 1.07997 * 119.99812 * 180.25509 * 13 12 11
47 47 H 0.96999 * 120.00060 * 0.02562 * 17 15 14
48 48 H 1.08998 * 109.47011 * 300.00206 * 18 17 15
49 49 H 1.09001 * 109.46756 * 59.99960 * 18 17 15
50 50 H 0.96992 * 120.00371 * 359.97438 * 21 19 18
51 51 H 0.96999 * 120.00517 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2029 1.1996 0.0000
4 7 1.5068 2.4109 0.0005
5 6 2.2420 3.6782 0.0011
6 1 3.1523 3.5698 0.5905
7 6 2.6067 4.0568 -1.4358
8 6 1.3669 4.7751 0.6112
9 6 1.0023 4.3964 2.0480
10 6 2.1350 6.0984 0.6123
11 6 3.5926 1.1966 0.0063
12 6 4.2859 0.0005 0.0015
13 6 3.6028 -1.1984 0.0010
14 6 2.2066 -1.2064 0.0005
15 6 1.4723 -2.4897 0.0005
16 8 0.2620 -2.4974 0.1132
17 7 2.1448 -3.6510 -0.1244
18 6 1.4172 -4.9225 -0.1250
19 6 2.3939 -6.0601 -0.2764
20 8 3.5809 -5.8313 -0.3747
21 7 1.9481 -7.3318 -0.3036
22 6 2.8367 -8.3667 -0.4419
23 1 3.8936 -8.1629 -0.5294
24 6 2.3771 -9.6777 -0.4705
25 7 1.0910 -9.9257 -0.3645
26 14 3.5877 -11.0878 -0.6596
27 1 4.9668 -10.5463 -0.7588
28 1 3.4912 -11.9846 0.5202
29 1 3.2672 -11.8535 -1.8909
30 1 -0.3633 -0.1161 1.0210
31 1 -0.3633 0.9424 -0.4100
32 1 -0.3633 -0.8262 -0.6112
33 1 0.5368 2.4130 0.0005
34 1 1.6962 4.1652 -2.0252
35 1 3.1532 4.9999 -1.4354
36 1 3.2300 3.2754 -1.8704
37 1 0.4566 4.8835 0.0217
38 1 0.3793 5.1781 2.4827
39 1 0.4553 3.4536 2.0476
40 1 1.9127 4.2880 2.6374
41 1 2.3951 6.3683 -0.4113
42 1 1.5114 6.8799 1.0465
43 1 3.0452 5.9897 1.2020
44 1 4.1328 2.1317 0.0108
45 1 5.3659 0.0045 0.0026
46 1 4.1482 -2.1305 0.0014
47 1 3.1107 -3.6449 -0.2140
48 1 0.8756 -5.0317 0.8146
49 1 0.7109 -4.9366 -0.9552
50 1 0.9989 -7.5147 -0.2254
51 1 0.7702 -10.8408 -0.3841
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000343517516.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:07:08
Heat of formation + Delta-G solvation = -58.168847 kcal
Electronic energy + Delta-G solvation = -29826.808477 eV
Core-core repulsion = 25725.439307 eV
Total energy + Delta-G solvation = -4101.369170 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-40.47519 -39.23026 -38.20721 -37.46220 -34.67559 -34.22476 -33.64867 -32.49383
-31.38489 -30.62173 -29.32643 -27.75300 -27.11696 -26.65687 -24.64411 -24.04111
-22.78211 -21.44711 -20.47551 -19.90261 -19.49950 -18.22682 -17.85107 -16.83197
-16.28385 -15.74137 -15.57471 -15.34064 -15.30083 -14.88650 -14.70208 -14.45523
-14.25354 -14.12324 -13.90740 -13.81179 -13.48300 -13.28192 -13.13537 -12.90226
-12.65802 -12.58977 -12.29060 -12.19012 -12.16139 -11.93368 -11.81669 -11.68713
-11.62146 -11.35735 -11.30182 -11.17750 -11.13435 -10.87195 -10.40023 -10.31424
-10.20799 -9.63862 -9.43632 -8.94777 -8.62312 -8.60958 -8.09145 -7.48396
-6.50628 -3.92538 0.94647 1.50375 3.06149 3.09649 3.11432 3.23177
3.29587 3.47656 3.74786 3.94423 4.12512 4.17953 4.42616 4.55658
4.76631 4.81184 4.87502 4.93210 5.00778 5.02235 5.06209 5.09896
5.18054 5.20205 5.26412 5.39744 5.42321 5.44095 5.49500 5.56022
5.61817 5.63021 5.78027 5.80875 5.84177 5.86356 5.93674 5.94613
5.98082 6.08390 6.17040 6.25766 6.46226 6.50211 6.71317 6.76334
7.19174 7.47201 7.52024 7.85763 7.93361 8.44756 8.49391 9.05660
9.40348 9.88207 10.66331
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.031347 B = 0.001714 C = 0.001657
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 893.021468 B =16330.781396 C =16892.266338
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.098 4.098
3 C 0.206 3.794
4 N -0.742 5.742
5 C 0.153 3.847
6 H 0.078 0.922
7 C -0.172 4.172
8 C -0.103 4.103
9 C -0.147 4.147
10 C -0.147 4.147
11 C -0.175 4.175
12 C -0.086 4.086
13 C -0.138 4.138
14 C -0.088 4.088
15 C 0.554 3.446
16 O -0.541 6.541
17 N -0.701 5.701
18 C 0.109 3.891
19 C 0.428 3.572
20 O -0.597 6.597
21 N -0.549 5.549
22 C -0.305 4.305
23 H 0.106 0.894
24 C 0.025 3.975
25 N -0.894 5.894
26 Si 0.932 3.068
27 H -0.267 1.267
28 H -0.280 1.280
29 H -0.280 1.280
30 H 0.069 0.931
31 H 0.044 0.956
32 H 0.097 0.903
33 H 0.399 0.601
34 H 0.057 0.943
35 H 0.065 0.935
36 H 0.060 0.940
37 H 0.073 0.927
38 H 0.054 0.946
39 H 0.058 0.942
40 H 0.055 0.945
41 H 0.060 0.940
42 H 0.057 0.943
43 H 0.057 0.943
44 H 0.122 0.878
45 H 0.125 0.875
46 H 0.127 0.873
47 H 0.411 0.589
48 H 0.085 0.915
49 H 0.085 0.915
50 H 0.396 0.604
51 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.328 29.840 1.416 29.876
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.104 4.104
3 C 0.104 3.896
4 N -0.374 5.374
5 C 0.047 3.953
6 H 0.096 0.904
7 C -0.231 4.231
8 C -0.122 4.122
9 C -0.204 4.204
10 C -0.205 4.205
11 C -0.198 4.198
12 C -0.105 4.105
13 C -0.158 4.158
14 C -0.092 4.092
15 C 0.341 3.659
16 O -0.421 6.421
17 N -0.356 5.356
18 C -0.019 4.019
19 C 0.214 3.786
20 O -0.483 6.483
21 N -0.184 5.184
22 C -0.434 4.434
23 H 0.124 0.876
24 C -0.177 4.177
25 N -0.535 5.535
26 Si 0.759 3.241
27 H -0.191 1.191
28 H -0.206 1.206
29 H -0.206 1.206
30 H 0.087 0.913
31 H 0.063 0.937
32 H 0.115 0.885
33 H 0.236 0.764
34 H 0.076 0.924
35 H 0.084 0.916
36 H 0.079 0.921
37 H 0.091 0.909
38 H 0.073 0.927
39 H 0.077 0.923
40 H 0.074 0.926
41 H 0.079 0.921
42 H 0.076 0.924
43 H 0.076 0.924
44 H 0.140 0.860
45 H 0.143 0.857
46 H 0.145 0.855
47 H 0.250 0.750
48 H 0.103 0.897
49 H 0.103 0.897
50 H 0.230 0.770
51 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 0.277 29.897 1.431 29.932
hybrid contribution 0.113 -0.948 -0.102 0.960
sum 0.391 28.949 1.329 28.982
Atomic orbital electron populations
1.20860 0.90355 1.02010 1.03274 1.19416 0.96385 0.90169 1.04398
1.17437 0.91171 0.85462 0.95546 1.44780 1.08021 1.01857 1.82715
1.20943 0.95305 0.83050 0.95974 0.90359 1.22368 1.02055 1.01710
0.96938 1.21368 0.98908 0.94741 0.97176 1.21824 1.01683 1.01514
0.95417 1.21866 1.00325 0.96081 1.02196 1.20769 0.92004 0.98601
1.08431 1.20794 0.99687 0.91563 0.98464 1.21164 0.92865 0.98731
1.03090 1.19515 0.93441 0.92379 1.03833 1.18251 0.87027 0.83670
0.76904 1.90690 1.13697 1.87298 1.50436 1.45659 1.12223 1.04729
1.72944 1.20965 0.94575 0.83062 1.03250 1.19747 0.89112 0.84149
0.85590 1.90495 1.16855 1.83823 1.57172 1.41797 1.10449 1.04110
1.62050 1.19788 0.91933 0.84300 1.47378 0.87601 1.25323 0.96693
0.98860 0.96853 1.69619 1.12907 1.21713 1.49237 0.85758 0.80253
0.80222 0.77850 1.19131 1.20626 1.20633 0.91259 0.93703 0.88508
0.76431 0.92407 0.91637 0.92093 0.90864 0.92689 0.92272 0.92583
0.92089 0.92351 0.92409 0.86000 0.85684 0.85508 0.74979 0.89724
0.89733 0.77034 0.91655
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.33 8.44 36.01 0.30 -1.03 16
2 C -0.10 -1.27 5.93 -104.00 -0.62 -1.89 16
3 C 0.21 2.23 6.61 -83.83 -0.55 1.67 16
4 N -0.74 -6.07 4.46 -52.20 -0.23 -6.30 16
5 C 0.15 0.97 1.85 -67.92 -0.13 0.84 16
6 H 0.08 0.52 6.46 -51.93 -0.34 0.19 16
7 C -0.17 -1.05 9.08 37.16 0.34 -0.71 16
8 C -0.10 -0.54 2.56 -90.62 -0.23 -0.77 16
9 C -0.15 -0.86 9.03 37.16 0.34 -0.52 16
10 C -0.15 -0.63 8.84 37.16 0.33 -0.30 16
11 C -0.18 -1.77 8.86 -39.31 -0.35 -2.12 16
12 C -0.09 -0.93 10.02 -39.67 -0.40 -1.33 16
13 C -0.14 -1.76 9.52 -39.16 -0.37 -2.14 16
14 C -0.09 -1.27 5.87 -104.99 -0.62 -1.89 16
15 C 0.55 9.34 7.70 -12.32 -0.09 9.24 16
16 O -0.54 -10.05 13.34 5.32 0.07 -9.98 16
17 N -0.70 -12.24 5.48 -62.43 -0.34 -12.58 16
18 C 0.11 2.05 6.15 -5.19 -0.03 2.02 16
19 C 0.43 9.91 7.85 -10.99 -0.09 9.82 16
20 O -0.60 -15.36 15.24 5.55 0.08 -15.28 16
21 N -0.55 -13.68 5.29 -10.97 -0.06 -13.74 16
22 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16
23 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16
24 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16
25 N -0.89 -23.93 13.05 55.50 0.72 -23.21 16
26 Si 0.93 20.59 29.55 -169.99 -5.02 15.56 16
27 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16
28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16
29 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16
30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16
31 H 0.04 0.43 6.23 -51.93 -0.32 0.11 16
32 H 0.10 1.41 5.85 -51.93 -0.30 1.11 16
33 H 0.40 3.06 6.25 -40.82 -0.25 2.80 16
34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
35 H 0.06 0.31 6.43 -51.93 -0.33 -0.02 16
36 H 0.06 0.44 7.74 -51.93 -0.40 0.04 16
37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
38 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16
39 H 0.06 0.40 7.45 -51.93 -0.39 0.01 16
40 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16
41 H 0.06 0.24 6.43 -51.93 -0.33 -0.10 16
42 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16
43 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16
44 H 0.12 0.99 6.11 -52.49 -0.32 0.67 16
45 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16
46 H 0.13 1.58 6.44 -52.49 -0.34 1.24 16
47 H 0.41 7.08 5.50 -40.82 -0.22 6.85 16
48 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16
49 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16
50 H 0.40 9.48 7.90 -40.82 -0.32 9.15 16
51 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16
LS Contribution 406.83 15.07 6.13 6.13
Total: -1.00 -30.76 406.83 -8.68 -39.44
By element:
Atomic # 1 Polarization: 24.54 SS G_CDS: -7.62 Total: 16.92 kcal
Atomic # 6 Polarization: 5.44 SS G_CDS: -2.41 Total: 3.03 kcal
Atomic # 7 Polarization: -55.93 SS G_CDS: 0.09 Total: -55.84 kcal
Atomic # 8 Polarization: -25.41 SS G_CDS: 0.16 Total: -25.25 kcal
Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -30.76 -8.68 -39.44 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000343517516.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.728 kcal
(2) G-P(sol) polarization free energy of solvation -30.765 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.493 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.169 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds