Wall clock time and date at job start Wed Apr 1 2020 05:07:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38680 * 120.11745 * 2 1
4 4 N 1.39707 * 120.00165 * 0.02562 * 3 2 1
5 5 C 1.46501 * 120.00090 * 179.97438 * 4 3 2
6 6 H 1.08991 * 109.47094 * 324.99646 * 5 4 3
7 7 C 1.53009 * 109.46952 * 84.99718 * 5 4 3
8 8 C 1.53006 * 109.46994 * 204.99589 * 5 4 3
9 9 C 1.52997 * 109.46702 * 60.00301 * 8 5 4
10 10 C 1.53002 * 109.46687 * 179.97438 * 8 5 4
11 11 C 1.38977 * 119.99264 * 179.69931 * 3 2 1
12 12 C 1.38244 * 120.22210 * 0.53431 * 11 3 2
13 13 C 1.37985 * 120.22823 * 359.48643 * 12 11 3
14 14 C 1.39460 * 120.10989 * 179.97438 * 2 1 3
15 15 C 1.47854 * 120.10984 * 0.02562 * 14 2 1
16 16 O 1.21550 * 120.00239 * 353.83092 * 15 14 2
17 17 N 1.34780 * 119.99807 * 173.82754 * 15 14 2
18 18 C 1.46505 * 120.00027 * 180.02562 * 17 15 14
19 19 C 1.50695 * 109.47064 * 180.02562 * 18 17 15
20 20 O 1.21291 * 120.00155 * 359.97438 * 19 18 17
21 21 N 1.34776 * 119.99574 * 180.02562 * 19 18 17
22 22 C 1.37102 * 119.99676 * 179.97438 * 21 19 18
23 23 H 1.07996 * 120.00008 * 359.97438 * 22 21 19
24 24 C 1.38950 * 119.99813 * 180.02562 * 22 21 19
25 25 N 1.31407 * 120.00354 * 359.97438 * 24 22 21
26 26 Si 1.86803 * 119.99836 * 179.97438 * 24 22 21
27 27 H 1.48495 * 109.47218 * 359.97438 * 26 24 22
28 28 H 1.48507 * 109.47015 * 119.99832 * 26 24 22
29 29 H 1.48500 * 109.47013 * 239.99721 * 26 24 22
30 30 H 1.08994 * 109.47165 * 263.51149 * 1 2 3
31 31 H 1.09003 * 109.46625 * 23.51112 * 1 2 3
32 32 H 1.09005 * 109.46841 * 143.50831 * 1 2 3
33 33 H 0.97001 * 120.00116 * 359.97438 * 4 3 2
34 34 H 1.08999 * 109.46973 * 60.00034 * 7 5 4
35 35 H 1.09002 * 109.46847 * 179.97438 * 7 5 4
36 36 H 1.08994 * 109.46964 * 299.99989 * 7 5 4
37 37 H 1.08997 * 109.47017 * 299.99581 * 8 5 4
38 38 H 1.09008 * 109.46388 * 179.97438 * 9 8 5
39 39 H 1.08999 * 109.47231 * 299.99027 * 9 8 5
40 40 H 1.08991 * 109.47544 * 59.99845 * 9 8 5
41 41 H 1.09007 * 109.46704 * 60.00640 * 10 8 5
42 42 H 1.09000 * 109.46560 * 179.97438 * 10 8 5
43 43 H 1.08999 * 109.47501 * 300.00298 * 10 8 5
44 44 H 1.07999 * 119.89050 * 180.27523 * 11 3 2
45 45 H 1.08002 * 119.88774 * 179.76382 * 12 11 3
46 46 H 1.07997 * 119.99812 * 180.25509 * 13 12 11
47 47 H 0.96999 * 120.00060 * 0.02562 * 17 15 14
48 48 H 1.08998 * 109.47011 * 300.00206 * 18 17 15
49 49 H 1.09001 * 109.46756 * 59.99960 * 18 17 15
50 50 H 0.96992 * 120.00371 * 359.97438 * 21 19 18
51 51 H 0.96999 * 120.00517 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2029 1.1996 0.0000
4 7 1.5068 2.4109 0.0005
5 6 2.2420 3.6782 0.0011
6 1 3.1523 3.5698 0.5905
7 6 2.6067 4.0568 -1.4358
8 6 1.3669 4.7751 0.6112
9 6 1.0023 4.3964 2.0480
10 6 2.1350 6.0984 0.6123
11 6 3.5926 1.1966 0.0063
12 6 4.2859 0.0005 0.0015
13 6 3.6028 -1.1984 0.0010
14 6 2.2066 -1.2064 0.0005
15 6 1.4723 -2.4897 0.0005
16 8 0.2620 -2.4974 0.1132
17 7 2.1448 -3.6510 -0.1244
18 6 1.4172 -4.9225 -0.1250
19 6 2.3939 -6.0601 -0.2764
20 8 3.5809 -5.8313 -0.3747
21 7 1.9481 -7.3318 -0.3036
22 6 2.8367 -8.3667 -0.4419
23 1 3.8936 -8.1629 -0.5294
24 6 2.3771 -9.6777 -0.4705
25 7 1.0910 -9.9257 -0.3645
26 14 3.5877 -11.0878 -0.6596
27 1 4.9668 -10.5463 -0.7588
28 1 3.4912 -11.9846 0.5202
29 1 3.2672 -11.8535 -1.8909
30 1 -0.3633 -0.1161 1.0210
31 1 -0.3633 0.9424 -0.4100
32 1 -0.3633 -0.8262 -0.6112
33 1 0.5368 2.4130 0.0005
34 1 1.6962 4.1652 -2.0252
35 1 3.1532 4.9999 -1.4354
36 1 3.2300 3.2754 -1.8704
37 1 0.4566 4.8835 0.0217
38 1 0.3793 5.1781 2.4827
39 1 0.4553 3.4536 2.0476
40 1 1.9127 4.2880 2.6374
41 1 2.3951 6.3683 -0.4113
42 1 1.5114 6.8799 1.0465
43 1 3.0452 5.9897 1.2020
44 1 4.1328 2.1317 0.0108
45 1 5.3659 0.0045 0.0026
46 1 4.1482 -2.1305 0.0014
47 1 3.1107 -3.6449 -0.2140
48 1 0.8756 -5.0317 0.8146
49 1 0.7109 -4.9366 -0.9552
50 1 0.9989 -7.5147 -0.2254
51 1 0.7702 -10.8408 -0.3841
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000343517516.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:07:07
Heat of formation + Delta-G solvation = -77.208604 kcal
Electronic energy + Delta-G solvation = -29827.634103 eV
Core-core repulsion = 25725.439307 eV
Total energy + Delta-G solvation = -4102.194796 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.56468 -40.47887 -39.73870 -38.28348 -36.30804 -35.56394 -34.82730 -33.42194
-33.37815 -31.38534 -30.16450 -28.98164 -27.91664 -27.46765 -26.43841 -24.81423
-23.67720 -22.33908 -21.45572 -21.31652 -20.67228 -20.06713 -19.10416 -17.71037
-17.57783 -16.99434 -16.81515 -16.74036 -16.48513 -16.29572 -15.75976 -15.66503
-15.44749 -15.28385 -14.85355 -14.77773 -14.48146 -14.27761 -14.17106 -13.93366
-13.61099 -13.55758 -13.42497 -13.22311 -13.14894 -13.05299 -12.91152 -12.81240
-12.66571 -12.44822 -12.33276 -12.11030 -12.07087 -11.81336 -11.76605 -11.58493
-11.36387 -10.96078 -10.71211 -10.57166 -10.25559 -10.09541 -9.69658 -8.51464
-8.27374 -6.01747 -0.06620 0.60540 1.34938 1.42928 1.57090 1.85664
1.92997 1.98290 2.30813 2.51614 2.94505 3.10534 3.15676 3.68389
3.73321 3.94153 3.99676 4.08704 4.09818 4.18498 4.22246 4.40560
4.41728 4.44160 4.47102 4.56498 4.62438 4.68051 4.75636 4.83304
4.84028 4.86101 4.95039 4.97460 5.05385 5.06690 5.18143 5.21256
5.29627 5.34516 5.36786 5.39297 5.45123 5.50682 5.57201 5.59003
5.84804 5.91474 6.43746 6.45671 6.52047 6.81211 7.02921 7.12951
7.43284 7.93515 8.65648
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.031347 B = 0.001714 C = 0.001657
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 893.021468 B =16330.781396 C =16892.266338
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.101 4.101
2 C -0.116 4.116
3 C 0.211 3.789
4 N -0.735 5.735
5 C 0.151 3.849
6 H 0.081 0.919
7 C -0.169 4.169
8 C -0.097 4.097
9 C -0.146 4.146
10 C -0.145 4.145
11 C -0.170 4.170
12 C -0.082 4.082
13 C -0.151 4.151
14 C -0.109 4.109
15 C 0.553 3.447
16 O -0.563 6.563
17 N -0.704 5.704
18 C 0.122 3.878
19 C 0.432 3.568
20 O -0.623 6.623
21 N -0.558 5.558
22 C -0.338 4.338
23 H 0.087 0.913
24 C -0.010 4.010
25 N -0.916 5.916
26 Si 0.998 3.002
27 H -0.270 1.270
28 H -0.271 1.271
29 H -0.271 1.271
30 H 0.062 0.938
31 H 0.069 0.931
32 H 0.071 0.929
33 H 0.401 0.599
34 H 0.054 0.946
35 H 0.082 0.918
36 H 0.049 0.951
37 H 0.075 0.925
38 H 0.060 0.940
39 H 0.047 0.953
40 H 0.051 0.949
41 H 0.067 0.933
42 H 0.061 0.939
43 H 0.059 0.941
44 H 0.148 0.852
45 H 0.152 0.848
46 H 0.123 0.877
47 H 0.412 0.588
48 H 0.096 0.904
49 H 0.096 0.904
50 H 0.399 0.601
51 H 0.280 0.720
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.135 31.855 1.357 31.904
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.122 4.122
3 C 0.107 3.893
4 N -0.366 5.366
5 C 0.047 3.953
6 H 0.099 0.901
7 C -0.227 4.227
8 C -0.116 4.116
9 C -0.204 4.204
10 C -0.203 4.203
11 C -0.192 4.192
12 C -0.100 4.100
13 C -0.172 4.172
14 C -0.113 4.113
15 C 0.343 3.657
16 O -0.445 6.445
17 N -0.358 5.358
18 C -0.006 4.006
19 C 0.219 3.781
20 O -0.512 6.512
21 N -0.194 5.194
22 C -0.467 4.467
23 H 0.105 0.895
24 C -0.211 4.211
25 N -0.556 5.556
26 Si 0.821 3.179
27 H -0.194 1.194
28 H -0.196 1.196
29 H -0.196 1.196
30 H 0.080 0.920
31 H 0.088 0.912
32 H 0.089 0.911
33 H 0.238 0.762
34 H 0.073 0.927
35 H 0.100 0.900
36 H 0.068 0.932
37 H 0.094 0.906
38 H 0.079 0.921
39 H 0.066 0.934
40 H 0.071 0.929
41 H 0.086 0.914
42 H 0.080 0.920
43 H 0.078 0.922
44 H 0.165 0.835
45 H 0.169 0.831
46 H 0.141 0.859
47 H 0.251 0.749
48 H 0.113 0.887
49 H 0.114 0.886
50 H 0.233 0.767
51 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 1.058 31.950 1.374 31.997
hybrid contribution -0.147 -1.415 -0.074 1.425
sum 0.912 30.535 1.301 30.576
Atomic orbital electron populations
1.20730 0.90343 1.02247 1.02425 1.19523 0.96609 0.90595 1.05429
1.17498 0.91639 0.85585 0.94612 1.44897 1.08282 1.01737 1.81650
1.21095 0.95426 0.82363 0.96457 0.90122 1.22335 1.01920 1.02170
0.96268 1.21326 0.98933 0.94805 0.96568 1.21816 1.01472 1.01191
0.95906 1.21857 1.00300 0.95412 1.02716 1.21082 0.91780 0.99467
1.06910 1.21097 1.01026 0.90844 0.97058 1.21226 0.92275 0.99663
1.04041 1.19435 0.94140 0.91476 1.06258 1.18694 0.86908 0.84193
0.75953 1.90678 1.14656 1.87665 1.51460 1.45673 1.12203 1.04471
1.73498 1.20795 0.93505 0.82076 1.04209 1.20395 0.89389 0.84560
0.83708 1.90469 1.18425 1.84378 1.57879 1.41837 1.10339 1.04439
1.62760 1.19793 0.91585 0.85700 1.49623 0.89545 1.26134 0.98470
1.00655 0.95829 1.69683 1.14137 1.22645 1.49106 0.84799 0.77775
0.77027 0.78288 1.19437 1.19608 1.19624 0.91981 0.91238 0.91075
0.76159 0.92697 0.89968 0.93162 0.90646 0.92073 0.93383 0.92937
0.91435 0.91971 0.92220 0.83472 0.83081 0.85862 0.74874 0.88655
0.88648 0.76690 0.91062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -2.49 8.44 71.24 0.60 -1.89 16
2 C -0.12 -2.97 5.93 -19.46 -0.12 -3.09 16
3 C 0.21 4.22 6.61 38.17 0.25 4.48 16
4 N -0.74 -10.64 4.46 -319.05 -1.42 -12.06 16
5 C 0.15 1.54 1.85 45.00 0.08 1.63 16
6 H 0.08 0.83 6.46 -2.39 -0.02 0.81 16
7 C -0.17 -1.60 9.08 71.99 0.65 -0.95 16
8 C -0.10 -0.79 2.56 -10.79 -0.03 -0.81 16
9 C -0.15 -1.45 9.03 71.98 0.65 -0.80 16
10 C -0.15 -0.85 8.84 71.98 0.64 -0.21 16
11 C -0.17 -3.03 8.86 22.45 0.20 -2.83 16
12 C -0.08 -1.60 10.02 22.21 0.22 -1.38 16
13 C -0.15 -3.82 9.52 22.54 0.21 -3.61 16
14 C -0.11 -3.20 5.87 -20.10 -0.12 -3.32 16
15 C 0.55 19.12 7.70 86.79 0.67 19.79 16
16 O -0.56 -21.50 13.34 -3.87 -0.05 -21.55 16
17 N -0.70 -25.13 5.48 -469.69 -2.57 -27.70 16
18 C 0.12 4.64 6.15 85.63 0.53 5.17 16
19 C 0.43 20.45 7.85 87.66 0.69 21.14 16
20 O -0.62 -32.88 15.24 -3.06 -0.05 -32.93 16
21 N -0.56 -28.47 5.29 -306.99 -1.62 -30.09 16
22 C -0.34 -18.81 9.68 84.04 0.81 -18.00 16
23 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16
24 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16
25 N -0.92 -48.95 13.05 21.66 0.28 -48.67 16
26 Si 1.00 42.05 29.55 68.60 2.03 44.08 16
27 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16
28 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16
29 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16
30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16
31 H 0.07 1.29 6.23 -2.39 -0.01 1.27 16
32 H 0.07 2.14 5.85 -2.38 -0.01 2.13 16
33 H 0.40 5.47 6.25 -92.71 -0.58 4.89 16
34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16
35 H 0.08 0.52 6.43 -2.39 -0.02 0.50 16
36 H 0.05 0.60 7.74 -2.39 -0.02 0.58 16
37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16
38 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16
39 H 0.05 0.58 7.45 -2.39 -0.02 0.56 16
40 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16
41 H 0.07 0.32 6.43 -2.38 -0.02 0.30 16
42 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16
43 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16
44 H 0.15 1.87 6.11 -2.91 -0.02 1.86 16
45 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16
46 H 0.12 3.12 6.44 -2.91 -0.02 3.10 16
47 H 0.41 14.59 5.50 -92.71 -0.51 14.08 16
48 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16
49 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16
50 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16
51 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16
Total: -1.00 -66.61 406.83 2.17 -64.44
By element:
Atomic # 1 Polarization: 50.08 SS G_CDS: -0.84 Total: 49.24 kcal
Atomic # 6 Polarization: 8.83 SS G_CDS: 6.42 Total: 15.24 kcal
Atomic # 7 Polarization: -113.18 SS G_CDS: -5.34 Total: -118.52 kcal
Atomic # 8 Polarization: -54.38 SS G_CDS: -0.10 Total: -54.48 kcal
Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal
Total: -66.61 2.17 -64.44 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000343517516.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.772 kcal
(2) G-P(sol) polarization free energy of solvation -66.609 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.380 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.437 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.209 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds