Wall clock time and date at job start Wed Apr 1 2020 05:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38305 * 119.96482 * 2 1 4 4 C 1.38263 * 120.14987 * 179.97438 * 3 2 1 5 5 C 1.38127 * 120.07656 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.03648 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47417 * 260.00136 * 6 5 4 8 8 C 1.34782 * 119.99973 * 180.02562 * 7 6 5 9 9 O 1.21585 * 119.99598 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99777 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99941 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47290 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.47244 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99737 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00232 * 180.02562 * 13 12 11 16 16 N 1.31506 * 120.00214 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99675 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47135 * 90.00213 * 17 15 13 19 19 H 1.48497 * 109.46949 * 210.00022 * 17 15 13 20 20 H 1.48503 * 109.47190 * 330.00095 * 17 15 13 21 21 C 1.38888 * 119.92280 * 0.02891 * 5 4 3 22 22 N 1.39670 * 120.07346 * 179.97438 * 21 5 4 23 23 C 1.47010 * 111.00088 * 243.59001 * 22 21 5 24 24 C 1.53100 * 109.25978 * 177.60848 * 23 22 21 25 25 O 1.43018 * 109.25997 * 56.84908 * 24 23 22 26 26 C 1.43014 * 113.73383 * 301.32913 * 25 24 23 27 27 C 1.47021 * 111.00033 * 119.95552 * 22 21 5 28 28 C 1.38085 * 119.96248 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47320 * 269.97864 * 1 2 3 30 30 H 1.09004 * 109.47009 * 29.98251 * 1 2 3 31 31 H 1.09006 * 109.47364 * 149.97583 * 1 2 3 32 32 H 1.07998 * 119.92257 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.96281 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47265 * 20.00986 * 6 5 4 35 35 H 1.09003 * 109.46963 * 140.00123 * 6 5 4 36 36 H 0.96999 * 120.00021 * 0.02562 * 7 6 5 37 37 H 0.96999 * 120.00218 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.47119 * 300.00670 * 11 10 8 39 39 H 1.09002 * 109.46383 * 60.00064 * 11 10 8 40 40 H 1.08998 * 109.47067 * 300.00245 * 12 11 10 41 41 H 1.09005 * 109.46629 * 60.00123 * 12 11 10 42 42 H 0.96996 * 120.00442 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.51079 * 297.54470 * 23 22 21 44 44 H 1.09002 * 109.50638 * 57.67365 * 23 22 21 45 45 H 1.09000 * 109.50501 * 296.91542 * 24 23 22 46 46 H 1.09004 * 109.51127 * 176.78418 * 24 23 22 47 47 H 1.08996 * 109.51225 * 298.73473 * 26 25 24 48 48 H 1.09004 * 109.54214 * 178.62397 * 26 25 24 49 49 H 1.09001 * 109.50525 * 302.32557 * 27 22 21 50 50 H 1.09000 * 109.50466 * 62.41340 * 27 22 21 51 51 H 1.07998 * 120.03376 * 359.72337 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 0.0005 5 6 4.2765 0.0096 0.0005 6 6 5.7834 0.0155 0.0005 7 7 6.2728 -0.2224 -1.3597 8 6 7.5981 -0.2604 -1.6020 9 8 8.3874 -0.0978 -0.6917 10 7 8.0482 -0.4788 -2.8535 11 6 9.4887 -0.5196 -3.1171 12 6 9.7277 -0.7798 -4.6057 13 6 11.2095 -0.8224 -4.8768 14 1 11.9107 -0.6779 -4.0681 15 6 11.6700 -1.0448 -6.1572 16 7 12.9631 -1.0815 -6.3937 17 14 10.4572 -1.2926 -7.5560 18 1 10.1319 0.0209 -8.1677 19 1 11.0599 -2.1809 -8.5822 20 1 9.2155 -1.9149 -7.0303 21 6 3.5859 -1.1954 -0.0006 22 7 4.2866 -2.4037 -0.0011 23 6 4.0234 -3.1648 -1.2310 24 6 4.8549 -4.4502 -1.2171 25 8 4.5447 -5.2001 -0.0395 26 6 4.7899 -4.4891 1.1769 27 6 3.9575 -3.2041 1.1873 28 6 2.1966 -1.1963 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6559 2.1324 -0.0004 33 1 4.1168 2.1400 0.0010 34 1 6.1430 0.9826 0.3522 35 1 6.1498 -0.7703 0.6611 36 1 5.6430 -0.3525 -2.0858 37 1 7.4184 -0.6081 -3.5798 38 1 9.9362 0.4347 -2.8389 39 1 9.9428 -1.3184 -2.5307 40 1 9.2802 -1.7338 -4.8842 41 1 9.2736 0.0194 -5.1917 42 1 13.2872 -1.2383 -7.2944 43 1 2.9643 -3.4171 -1.2834 44 1 4.2980 -2.5630 -2.0973 45 1 5.9153 -4.1977 -1.2190 46 1 4.6203 -5.0452 -2.0998 47 1 5.8483 -4.2377 1.2447 48 1 4.5085 -5.1117 2.0263 49 1 4.1842 -2.6309 2.0864 50 1 2.8972 -3.4563 1.1741 51 1 1.6566 -2.1316 0.0036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343848862.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:10 Heat of formation + Delta-G solvation = -46.019253 kcal Electronic energy + Delta-G solvation = -30790.702196 eV Core-core repulsion = 26689.859871 eV Total energy + Delta-G solvation = -4100.842325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97066 -39.49429 -38.99244 -36.08233 -35.42474 -34.58007 -32.91093 -32.49196 -31.54284 -30.56907 -30.10607 -28.36051 -27.02037 -25.18940 -24.36431 -23.95162 -23.04993 -20.96684 -20.74686 -20.58805 -20.46332 -18.16345 -17.36070 -16.84308 -16.46595 -16.39878 -16.18232 -15.62103 -15.39784 -15.32092 -15.13677 -15.04125 -14.45795 -14.27862 -14.14064 -13.86102 -13.75005 -13.72521 -13.63732 -12.96896 -12.85620 -12.84584 -12.57005 -12.33289 -12.27878 -11.83632 -11.74002 -11.70540 -11.52616 -11.43728 -11.16097 -10.86646 -10.34515 -10.21135 -10.04029 -9.94805 -9.74590 -9.29432 -9.18863 -8.98110 -8.88315 -8.83814 -8.59647 -8.28157 -6.08097 -4.07728 0.82161 0.92283 3.00785 3.24849 3.26974 3.34426 3.35851 3.44960 3.56664 3.65026 4.34122 4.40141 4.43082 4.52335 4.56645 4.59785 4.72255 4.75949 4.79998 4.85243 4.86590 4.90397 5.14195 5.16278 5.21863 5.24900 5.28773 5.30371 5.36339 5.44963 5.48959 5.57198 5.62720 5.65055 5.88194 5.96082 6.12145 6.14960 6.22095 6.30589 6.39755 6.45063 6.62016 6.68246 6.81801 6.89641 6.96005 7.13094 7.29356 7.38402 7.71258 8.38972 8.50777 8.96685 9.02836 9.52199 11.05041 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.002482 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.841697 B =11278.692487 C =12169.144649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.072 4.072 3 C -0.123 4.123 4 C -0.091 4.091 5 C -0.086 4.086 6 C 0.195 3.805 7 N -0.741 5.741 8 C 0.701 3.299 9 O -0.596 6.596 10 N -0.744 5.744 11 C 0.150 3.850 12 C -0.021 4.021 13 C -0.521 4.521 14 H 0.076 0.924 15 C 0.068 3.932 16 N -0.899 5.899 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.266 1.266 21 C 0.107 3.893 22 N -0.495 5.495 23 C 0.028 3.972 24 C 0.062 3.938 25 O -0.385 6.385 26 C 0.063 3.937 27 C 0.024 3.976 28 C -0.150 4.150 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.390 0.610 37 H 0.390 0.610 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.021 0.979 41 H 0.016 0.984 42 H 0.264 0.736 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.064 0.936 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.046 0.954 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.719 -1.085 14.591 33.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.073 4.073 3 C -0.141 4.141 4 C -0.110 4.110 5 C -0.087 4.087 6 C 0.071 3.929 7 N -0.397 5.397 8 C 0.401 3.599 9 O -0.474 6.474 10 N -0.397 5.397 11 C 0.027 3.973 12 C -0.059 4.059 13 C -0.559 4.559 14 H 0.094 0.906 15 C -0.133 4.133 16 N -0.537 5.537 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.191 1.191 21 C 0.013 3.987 22 N -0.217 5.217 23 C -0.099 4.099 24 C -0.015 4.015 25 O -0.303 6.303 26 C -0.014 4.014 27 C -0.103 4.103 28 C -0.170 4.170 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.223 0.777 37 H 0.222 0.778 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.039 0.961 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.118 0.882 47 H 0.082 0.918 48 H 0.117 0.883 49 H 0.106 0.894 50 H 0.064 0.936 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -28.335 -1.078 15.314 32.227 hybrid contribution -1.944 -0.095 -1.566 2.498 sum -30.279 -1.173 13.747 33.275 Atomic orbital electron populations 1.20817 0.91121 1.02891 1.02425 1.19832 0.96068 0.92852 0.98584 1.21072 0.94120 0.97564 1.01377 1.21112 0.94029 0.97601 0.98229 1.19864 0.95635 0.91639 1.01597 1.19735 0.87470 1.01734 0.83983 1.45006 1.05355 1.79255 1.10069 1.15991 0.82026 0.78175 0.83710 1.90900 1.54882 1.57749 1.43907 1.45498 1.09836 1.76996 1.07412 1.21340 0.76340 1.01309 0.98327 1.19790 0.98649 0.96564 0.90898 1.20929 0.89705 1.49697 0.95582 0.90590 1.25000 0.95071 0.94587 0.98677 1.69900 1.12757 1.49708 1.21385 0.86746 0.81769 0.78390 0.82118 1.20290 1.21338 1.19108 1.18613 0.89920 0.90572 0.99581 1.59779 1.56352 1.02818 1.02715 1.22818 0.99066 0.95585 0.92424 1.22703 0.99299 0.91212 0.88247 1.87988 1.87478 1.40810 1.14054 1.22678 0.99537 0.91787 0.87418 1.22858 0.98812 0.95192 0.93457 1.21496 0.94327 0.98006 1.03219 0.91055 0.91312 0.91628 0.85781 0.85229 0.91682 0.90267 0.77734 0.77787 0.92287 0.92227 0.96094 0.96551 0.92594 0.93647 0.89474 0.91599 0.88157 0.91774 0.88307 0.89384 0.93607 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 10.01 36.00 0.36 -0.23 16 2 C -0.07 -0.53 5.88 -104.65 -0.62 -1.14 16 3 C -0.12 -0.89 9.70 -39.55 -0.38 -1.28 16 4 C -0.09 -0.74 9.66 -39.61 -0.38 -1.12 16 5 C -0.09 -0.81 5.27 -104.42 -0.55 -1.36 16 6 C 0.19 2.26 5.43 -5.20 -0.03 2.23 16 7 N -0.74 -9.31 5.55 -66.42 -0.37 -9.68 16 8 C 0.70 12.01 8.57 -86.92 -0.74 11.26 16 9 O -0.60 -12.78 16.34 5.29 0.09 -12.70 16 10 N -0.74 -12.59 5.56 -65.22 -0.36 -12.96 16 11 C 0.15 3.14 5.61 -4.04 -0.02 3.11 16 12 C -0.02 -0.49 4.15 -27.88 -0.12 -0.60 16 13 C -0.52 -14.70 9.66 -34.44 -0.33 -15.04 16 14 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 17 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 21 C 0.11 0.96 4.71 -83.79 -0.39 0.57 16 22 N -0.49 -4.52 3.84 -170.80 -0.66 -5.18 16 23 C 0.03 0.24 5.40 -3.71 -0.02 0.22 16 24 C 0.06 0.58 7.01 37.21 0.26 0.84 16 25 O -0.38 -4.05 10.83 -35.23 -0.38 -4.43 16 26 C 0.06 0.54 7.01 37.21 0.26 0.80 16 27 C 0.02 0.19 5.36 -3.71 -0.02 0.17 16 28 C -0.15 -1.20 8.27 -39.38 -0.33 -1.53 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.13 0.92 8.04 -52.49 -0.42 0.50 16 34 H 0.06 0.78 8.00 -51.93 -0.42 0.37 16 35 H 0.08 1.05 7.80 -51.93 -0.40 0.64 16 36 H 0.39 4.07 8.48 -40.82 -0.35 3.73 16 37 H 0.39 5.49 8.49 -40.82 -0.35 5.14 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 41 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.05 0.38 7.42 -51.93 -0.39 -0.01 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.05 0.36 7.21 -51.93 -0.37 -0.02 16 51 H 0.12 0.88 7.04 -52.49 -0.37 0.51 16 LS Contribution 412.51 15.07 6.22 6.22 Total: -1.00 -34.05 412.51 -11.00 -45.04 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -8.48 Total: 5.15 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -3.15 Total: -1.21 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.61 Total: -54.56 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.29 Total: -17.12 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.05 -11.00 -45.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343848862.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.975 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds