Wall clock time and date at job start Wed Apr 1 2020 05:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38305 * 119.96482 * 2 1 4 4 C 1.38263 * 120.14987 * 179.97438 * 3 2 1 5 5 C 1.38127 * 120.07656 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.03648 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47417 * 260.00136 * 6 5 4 8 8 C 1.34782 * 119.99973 * 180.02562 * 7 6 5 9 9 O 1.21585 * 119.99598 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99777 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99941 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47290 * 180.02562 * 11 10 8 13 13 C 1.50699 * 109.47244 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99737 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00232 * 180.02562 * 13 12 11 16 16 N 1.31506 * 120.00214 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99675 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47135 * 90.00213 * 17 15 13 19 19 H 1.48497 * 109.46949 * 210.00022 * 17 15 13 20 20 H 1.48503 * 109.47190 * 330.00095 * 17 15 13 21 21 C 1.38888 * 119.92280 * 0.02891 * 5 4 3 22 22 N 1.39670 * 120.07346 * 179.97438 * 21 5 4 23 23 C 1.47010 * 111.00088 * 243.59001 * 22 21 5 24 24 C 1.53100 * 109.25978 * 177.60848 * 23 22 21 25 25 O 1.43018 * 109.25997 * 56.84908 * 24 23 22 26 26 C 1.43014 * 113.73383 * 301.32913 * 25 24 23 27 27 C 1.47021 * 111.00033 * 119.95552 * 22 21 5 28 28 C 1.38085 * 119.96248 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47320 * 269.97864 * 1 2 3 30 30 H 1.09004 * 109.47009 * 29.98251 * 1 2 3 31 31 H 1.09006 * 109.47364 * 149.97583 * 1 2 3 32 32 H 1.07998 * 119.92257 * 359.97438 * 3 2 1 33 33 H 1.08001 * 119.96281 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47265 * 20.00986 * 6 5 4 35 35 H 1.09003 * 109.46963 * 140.00123 * 6 5 4 36 36 H 0.96999 * 120.00021 * 0.02562 * 7 6 5 37 37 H 0.96999 * 120.00218 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.47119 * 300.00670 * 11 10 8 39 39 H 1.09002 * 109.46383 * 60.00064 * 11 10 8 40 40 H 1.08998 * 109.47067 * 300.00245 * 12 11 10 41 41 H 1.09005 * 109.46629 * 60.00123 * 12 11 10 42 42 H 0.96996 * 120.00442 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.51079 * 297.54470 * 23 22 21 44 44 H 1.09002 * 109.50638 * 57.67365 * 23 22 21 45 45 H 1.09000 * 109.50501 * 296.91542 * 24 23 22 46 46 H 1.09004 * 109.51127 * 176.78418 * 24 23 22 47 47 H 1.08996 * 109.51225 * 298.73473 * 26 25 24 48 48 H 1.09004 * 109.54214 * 178.62397 * 26 25 24 49 49 H 1.09001 * 109.50525 * 302.32557 * 27 22 21 50 50 H 1.09000 * 109.50466 * 62.41340 * 27 22 21 51 51 H 1.07998 * 120.03376 * 359.72337 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 0.0005 5 6 4.2765 0.0096 0.0005 6 6 5.7834 0.0155 0.0005 7 7 6.2728 -0.2224 -1.3597 8 6 7.5981 -0.2604 -1.6020 9 8 8.3874 -0.0978 -0.6917 10 7 8.0482 -0.4788 -2.8535 11 6 9.4887 -0.5196 -3.1171 12 6 9.7277 -0.7798 -4.6057 13 6 11.2095 -0.8224 -4.8768 14 1 11.9107 -0.6779 -4.0681 15 6 11.6700 -1.0448 -6.1572 16 7 12.9631 -1.0815 -6.3937 17 14 10.4572 -1.2926 -7.5560 18 1 10.1319 0.0209 -8.1677 19 1 11.0599 -2.1809 -8.5822 20 1 9.2155 -1.9149 -7.0303 21 6 3.5859 -1.1954 -0.0006 22 7 4.2866 -2.4037 -0.0011 23 6 4.0234 -3.1648 -1.2310 24 6 4.8549 -4.4502 -1.2171 25 8 4.5447 -5.2001 -0.0395 26 6 4.7899 -4.4891 1.1769 27 6 3.9575 -3.2041 1.1873 28 6 2.1966 -1.1963 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5142 32 1 1.6559 2.1324 -0.0004 33 1 4.1168 2.1400 0.0010 34 1 6.1430 0.9826 0.3522 35 1 6.1498 -0.7703 0.6611 36 1 5.6430 -0.3525 -2.0858 37 1 7.4184 -0.6081 -3.5798 38 1 9.9362 0.4347 -2.8389 39 1 9.9428 -1.3184 -2.5307 40 1 9.2802 -1.7338 -4.8842 41 1 9.2736 0.0194 -5.1917 42 1 13.2872 -1.2383 -7.2944 43 1 2.9643 -3.4171 -1.2834 44 1 4.2980 -2.5630 -2.0973 45 1 5.9153 -4.1977 -1.2190 46 1 4.6203 -5.0452 -2.0998 47 1 5.8483 -4.2377 1.2447 48 1 4.5085 -5.1117 2.0263 49 1 4.1842 -2.6309 2.0864 50 1 2.8972 -3.4563 1.1741 51 1 1.6566 -2.1316 0.0036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343848862.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:09 Heat of formation + Delta-G solvation = -70.177191 kcal Electronic energy + Delta-G solvation = -30791.749763 eV Core-core repulsion = 26689.859871 eV Total energy + Delta-G solvation = -4101.889891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.67370 -40.80297 -39.71900 -36.86954 -36.69727 -35.93925 -34.77337 -33.51312 -32.22212 -31.85701 -31.17980 -29.20950 -27.69727 -26.73972 -25.10959 -25.01082 -23.68155 -22.63770 -21.95307 -21.59535 -21.16275 -19.50617 -18.87912 -18.06163 -17.35403 -17.17148 -17.08452 -16.54991 -16.49440 -16.22520 -16.12664 -16.06923 -15.70502 -15.30485 -15.23676 -15.11780 -14.99173 -14.58199 -14.52644 -14.42074 -13.85052 -13.59436 -13.48317 -13.32090 -13.06283 -12.92772 -12.87917 -12.48813 -12.41531 -12.34959 -12.16554 -12.13389 -12.11648 -11.74556 -11.57010 -11.51581 -11.27525 -10.77990 -10.77128 -10.30674 -9.79217 -9.68688 -9.53817 -9.49072 -8.28116 -6.35195 0.18419 0.32434 1.40129 1.43029 1.54320 1.86326 2.24391 2.38488 2.59239 2.69147 2.88859 3.06861 3.49647 3.69431 3.81995 3.85590 3.92392 4.03490 4.10664 4.17927 4.19255 4.25388 4.31433 4.38161 4.47962 4.51399 4.59334 4.65402 4.67013 4.74684 4.76601 4.78385 4.79378 4.82418 4.91638 4.93882 4.99206 5.18716 5.24011 5.37340 5.44098 5.47866 5.48989 5.55310 5.62242 5.69910 5.75102 5.85572 6.07587 6.10152 6.25551 6.33388 6.72125 7.18812 7.29117 7.66633 8.88763 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.002482 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.841697 B =11278.692487 C =12169.144649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.071 4.071 3 C -0.124 4.124 4 C -0.092 4.092 5 C -0.098 4.098 6 C 0.201 3.799 7 N -0.717 5.717 8 C 0.700 3.300 9 O -0.642 6.642 10 N -0.732 5.732 11 C 0.166 3.834 12 C -0.010 4.010 13 C -0.538 4.538 14 H 0.028 0.972 15 C 0.003 3.997 16 N -0.951 5.951 17 Si 0.960 3.040 18 H -0.265 1.265 19 H -0.287 1.287 20 H -0.236 1.236 21 C 0.103 3.897 22 N -0.509 5.509 23 C 0.033 3.967 24 C 0.062 3.938 25 O -0.400 6.400 26 C 0.061 3.939 27 C 0.028 3.972 28 C -0.154 4.154 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.405 0.595 37 H 0.408 0.592 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.268 0.732 43 H 0.052 0.948 44 H 0.090 0.910 45 H 0.046 0.954 46 H 0.115 0.885 47 H 0.048 0.952 48 H 0.118 0.882 49 H 0.090 0.910 50 H 0.053 0.947 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.106 -0.889 13.578 36.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.072 4.072 3 C -0.142 4.142 4 C -0.111 4.111 5 C -0.099 4.099 6 C 0.077 3.923 7 N -0.373 5.373 8 C 0.400 3.600 9 O -0.524 6.524 10 N -0.388 5.388 11 C 0.042 3.958 12 C -0.048 4.048 13 C -0.576 4.576 14 H 0.046 0.954 15 C -0.194 4.194 16 N -0.591 5.591 17 Si 0.783 3.217 18 H -0.190 1.190 19 H -0.213 1.213 20 H -0.159 1.159 21 C 0.009 3.991 22 N -0.231 5.231 23 C -0.094 4.094 24 C -0.015 4.015 25 O -0.319 6.319 26 C -0.015 4.015 27 C -0.099 4.099 28 C -0.174 4.174 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.240 0.760 37 H 0.244 0.756 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.133 0.867 47 H 0.067 0.933 48 H 0.136 0.864 49 H 0.108 0.892 50 H 0.071 0.929 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -32.802 -0.882 14.304 35.796 hybrid contribution -0.557 -0.136 -1.128 1.266 sum -33.359 -1.018 13.176 35.881 Atomic orbital electron populations 1.20865 0.89432 1.03691 1.03181 1.20146 0.97352 0.92519 0.97140 1.21325 0.93723 0.98560 1.00595 1.21243 0.94675 0.97386 0.97807 1.19654 0.93916 0.92561 1.03775 1.19663 0.89285 1.00610 0.82722 1.44822 1.03775 1.77507 1.11178 1.16111 0.83056 0.77825 0.82983 1.90874 1.56518 1.59751 1.45285 1.45093 1.08419 1.77048 1.08193 1.20839 0.78563 0.99503 0.96911 1.19631 0.95190 0.97842 0.92140 1.21252 0.92004 1.49694 0.94691 0.95365 1.26089 0.97269 0.93974 1.02064 1.70075 1.15486 1.51165 1.22390 0.85521 0.79689 0.78950 0.77588 1.19013 1.21323 1.15916 1.18642 0.90430 0.90180 0.99857 1.59759 1.56948 1.03218 1.03148 1.22772 0.99196 0.95069 0.92357 1.22751 0.98305 0.91933 0.88542 1.87964 1.87483 1.41664 1.14769 1.22778 0.98814 0.92454 0.87504 1.22823 0.99001 0.94759 0.93282 1.21572 0.93799 0.98717 1.03284 0.90222 0.90230 0.91175 0.83692 0.84454 0.92252 0.92182 0.76005 0.75609 0.94220 0.94306 0.94511 0.94653 0.92359 0.92952 0.89198 0.93583 0.86728 0.93337 0.86373 0.89197 0.92880 0.85708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.01 71.24 0.71 -0.08 16 2 C -0.07 -0.82 5.88 -19.89 -0.12 -0.93 16 3 C -0.12 -1.43 9.70 22.29 0.22 -1.22 16 4 C -0.09 -1.31 9.66 22.25 0.22 -1.10 16 5 C -0.10 -1.70 5.27 -19.74 -0.10 -1.80 16 6 C 0.20 4.60 5.43 85.63 0.46 5.07 16 7 N -0.72 -17.34 5.55 -482.30 -2.68 -20.02 16 8 C 0.70 23.80 8.57 179.05 1.53 25.34 16 9 O -0.64 -28.23 16.34 -3.98 -0.07 -28.30 16 10 N -0.73 -24.02 5.56 -478.53 -2.66 -26.68 16 11 C 0.17 7.04 5.61 86.38 0.48 7.52 16 12 C -0.01 -0.46 4.15 29.85 0.12 -0.34 16 13 C -0.54 -31.08 9.66 25.60 0.25 -30.83 16 14 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 15 C 0.00 0.17 5.47 84.66 0.46 0.63 16 16 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 17 Si 0.96 42.50 27.47 68.60 1.88 44.38 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 21 C 0.10 1.69 4.71 38.21 0.18 1.87 16 22 N -0.51 -8.80 3.84 -694.30 -2.67 -11.47 16 23 C 0.03 0.52 5.40 86.32 0.47 0.98 16 24 C 0.06 1.11 7.01 72.02 0.50 1.61 16 25 O -0.40 -8.15 10.83 -148.98 -1.61 -9.76 16 26 C 0.06 1.03 7.01 72.02 0.50 1.53 16 27 C 0.03 0.43 5.36 86.31 0.46 0.89 16 28 C -0.15 -2.09 8.27 22.40 0.19 -1.90 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.40 8.09 -2.39 -0.02 0.38 16 31 H 0.07 0.44 8.08 -2.38 -0.02 0.42 16 32 H 0.15 1.05 8.06 -2.91 -0.02 1.02 16 33 H 0.14 1.69 8.04 -2.91 -0.02 1.66 16 34 H 0.06 1.43 8.00 -2.39 -0.02 1.41 16 35 H 0.06 1.63 7.80 -2.39 -0.02 1.61 16 36 H 0.40 7.62 8.48 -92.71 -0.79 6.84 16 37 H 0.41 10.41 8.49 -92.71 -0.79 9.63 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 41 H 0.04 1.48 7.57 -2.38 -0.02 1.46 16 42 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.05 0.76 7.42 -2.39 -0.02 0.74 16 44 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 49 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.05 0.74 7.21 -2.39 -0.02 0.72 16 51 H 0.13 1.53 7.04 -2.91 -0.02 1.51 16 Total: -1.00 -76.27 412.51 -1.65 -77.91 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.69 Total: 26.14 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 6.55 Total: 7.25 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -7.71 Total: -117.63 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.68 Total: -38.06 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.88 Total: 44.38 kcal Total: -76.27 -1.65 -77.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343848862.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.738 kcal (2) G-P(sol) polarization free energy of solvation -76.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds