Wall clock time and date at job start Wed Apr 1 2020 04:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38254 * 119.99823 * 2 1 4 4 C 1.38216 * 119.99725 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00107 * 0.02562 * 4 3 2 6 6 C 1.38209 * 119.99877 * 359.69851 * 5 4 3 7 7 C 1.50698 * 120.00297 * 180.29937 * 6 5 4 8 8 H 1.09000 * 109.47511 * 200.25921 * 7 6 5 9 9 N 1.46506 * 109.46946 * 320.25600 * 7 6 5 10 10 C 1.34776 * 119.99993 * 204.99742 * 9 7 6 11 11 O 1.21589 * 120.00168 * 0.02562 * 10 9 7 12 12 N 1.34778 * 120.00076 * 179.97438 * 10 9 7 13 13 C 1.46498 * 119.99864 * 179.97438 * 12 10 9 14 14 C 1.50707 * 109.46676 * 180.02562 * 13 12 10 15 15 O 1.21284 * 120.00268 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99531 * 179.97438 * 14 13 12 17 17 C 1.37103 * 119.99846 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99713 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99941 * 180.02562 * 17 16 14 20 20 N 1.31414 * 119.99639 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00222 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47072 * 89.99934 * 21 19 17 23 23 H 1.48502 * 109.47070 * 209.99994 * 21 19 17 24 24 H 1.48503 * 109.46970 * 329.99882 * 21 19 17 25 25 C 1.53000 * 109.47234 * 80.25431 * 7 6 5 26 26 C 1.52998 * 109.46997 * 60.00233 * 25 7 6 27 27 C 1.52998 * 109.47396 * 180.02562 * 25 7 6 28 28 C 1.52994 * 109.46952 * 300.00523 * 25 7 6 29 29 C 1.38212 * 119.99857 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46665 * 270.01967 * 1 2 3 31 31 H 1.09001 * 109.47281 * 30.01624 * 1 2 3 32 32 H 1.08992 * 109.47193 * 150.02279 * 1 2 3 33 33 H 1.07997 * 120.00472 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.99686 * 179.97438 * 4 3 2 35 35 H 1.07999 * 120.00093 * 179.97438 * 5 4 3 36 36 H 0.97001 * 119.99979 * 24.99803 * 9 7 6 37 37 H 0.97000 * 119.99546 * 0.02562 * 12 10 9 38 38 H 1.08996 * 109.47392 * 299.99767 * 13 12 10 39 39 H 1.08998 * 109.46935 * 60.00658 * 13 12 10 40 40 H 0.97001 * 120.00765 * 0.02562 * 16 14 13 41 41 H 0.96997 * 119.99923 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47114 * 59.99682 * 26 25 7 43 43 H 1.08998 * 109.47476 * 180.02562 * 26 25 7 44 44 H 1.09003 * 109.47145 * 299.99947 * 26 25 7 45 45 H 1.09001 * 109.46806 * 59.99542 * 27 25 7 46 46 H 1.08989 * 109.47258 * 180.02562 * 27 25 7 47 47 H 1.09002 * 109.46679 * 300.00296 * 27 25 7 48 48 H 1.08995 * 109.47728 * 59.99783 * 28 25 7 49 49 H 1.09002 * 109.47333 * 180.02562 * 28 25 7 50 50 H 1.09001 * 109.47068 * 299.99448 * 28 25 7 51 51 H 1.08002 * 119.99812 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1969 0.0063 7 6 4.3341 -2.5020 0.0131 8 1 3.6810 -3.3005 -0.3389 9 7 5.4984 -2.3984 -0.8701 10 6 6.0247 -3.5085 -1.4244 11 8 5.5330 -4.5959 -1.1918 12 7 7.0954 -3.4131 -2.2374 13 6 7.6678 -4.6198 -2.8394 14 6 8.8474 -4.2417 -3.6978 15 8 9.1777 -3.0789 -3.7966 16 7 9.5358 -5.1960 -4.3550 17 6 10.6093 -4.8522 -5.1355 18 1 10.9029 -3.8167 -5.2241 19 6 11.3188 -5.8360 -5.8134 20 7 12.3473 -5.5063 -6.5620 21 14 10.8105 -7.6270 -5.6608 22 1 9.8261 -7.9544 -6.7232 23 1 12.0061 -8.4952 -5.8092 24 1 10.1954 -7.8551 -4.3285 25 6 4.8001 -2.8145 1.4365 26 6 3.5842 -2.9228 2.3589 27 6 5.5655 -4.1392 1.4434 28 6 5.7168 -1.6937 1.9306 29 6 2.1981 -1.1970 0.0005 30 1 -0.3632 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5134 33 1 1.6584 2.1326 0.0004 34 1 4.1204 2.1327 0.0001 35 1 5.3517 0.0000 0.0005 36 1 5.8904 -1.5308 -1.0560 37 1 7.4874 -2.5455 -2.4232 38 1 7.9948 -5.2987 -2.0519 39 1 6.9139 -5.1120 -3.4537 40 1 9.2720 -6.1261 -4.2757 41 1 12.8429 -6.1931 -7.0349 42 1 2.9310 -3.7212 2.0069 43 1 3.9161 -3.1450 3.3731 44 1 3.0392 -1.9788 2.3540 45 1 6.4317 -4.0617 0.7863 46 1 5.8970 -4.3621 2.4575 47 1 4.9126 -4.9379 1.0912 48 1 5.1719 -0.7498 1.9257 49 1 6.0492 -1.9165 2.9445 50 1 6.5831 -1.6166 1.2735 51 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358270984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:40 Heat of formation + Delta-G solvation = -48.728319 kcal Electronic energy + Delta-G solvation = -30811.035886 eV Core-core repulsion = 26710.076087 eV Total energy + Delta-G solvation = -4100.959798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.93634 -39.51323 -38.45783 -37.28470 -34.45451 -33.92357 -33.59866 -32.81754 -31.79637 -31.48687 -28.07845 -27.83062 -27.13307 -26.75410 -25.91283 -24.13092 -22.50100 -21.17592 -20.70577 -19.64723 -18.89813 -18.80691 -18.15533 -16.93973 -16.21578 -16.03145 -15.65029 -15.47373 -15.16685 -14.95072 -14.80508 -14.49417 -14.19860 -14.03593 -13.95892 -13.69908 -13.55537 -13.31557 -13.10320 -12.76905 -12.48251 -12.47239 -12.30594 -12.26318 -12.16493 -12.14615 -11.92401 -11.69044 -11.61980 -11.26303 -11.22259 -11.20354 -10.81256 -10.63720 -10.60311 -10.06263 -10.00604 -9.69102 -9.18874 -9.00058 -8.85045 -8.75696 -8.64814 -8.29704 -6.40233 -3.92744 1.02964 1.10281 2.77150 3.00269 3.04955 3.13056 3.34031 3.47462 3.59049 4.04075 4.28134 4.30457 4.51656 4.60775 4.62235 4.68992 4.78908 4.82118 4.96013 5.02681 5.14841 5.15057 5.25886 5.26194 5.38072 5.45262 5.49030 5.55690 5.64725 5.68195 5.70294 5.72205 5.81024 5.84135 5.84678 5.87170 5.92477 5.99640 6.09953 6.18155 6.21162 6.24345 6.30046 6.46061 6.57307 6.68616 6.71246 7.05560 7.45765 8.01092 8.19094 8.45210 8.76451 8.82461 9.30615 9.64486 10.71960 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.002146 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.557164 B =13042.084222 C =13593.171001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.114 4.114 5 C -0.117 4.117 6 C -0.078 4.078 7 C 0.216 3.784 8 H 0.096 0.904 9 N -0.740 5.740 10 C 0.707 3.293 11 O -0.592 6.592 12 N -0.726 5.726 13 C 0.127 3.873 14 C 0.439 3.561 15 O -0.579 6.579 16 N -0.577 5.577 17 C -0.309 4.309 18 H 0.121 0.879 19 C 0.044 3.956 20 N -0.875 5.875 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.267 1.267 25 C -0.073 4.073 26 C -0.140 4.140 27 C -0.130 4.130 28 C -0.147 4.147 29 C -0.106 4.106 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.395 0.605 37 H 0.407 0.593 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.374 0.626 41 H 0.275 0.725 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.043 0.957 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.053 0.947 50 H 0.056 0.944 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.173 9.129 17.542 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.140 4.140 4 C -0.132 4.132 5 C -0.135 4.135 6 C -0.079 4.079 7 C 0.110 3.890 8 H 0.114 0.886 9 N -0.396 5.396 10 C 0.407 3.593 11 O -0.471 6.471 12 N -0.384 5.384 13 C -0.001 4.001 14 C 0.225 3.775 15 O -0.464 6.464 16 N -0.215 5.215 17 C -0.438 4.438 18 H 0.139 0.861 19 C -0.160 4.160 20 N -0.514 5.514 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.192 1.192 25 C -0.075 4.075 26 C -0.197 4.197 27 C -0.188 4.188 28 C -0.204 4.204 29 C -0.125 4.125 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.230 0.770 37 H 0.244 0.756 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.208 0.792 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.072 0.928 50 H 0.075 0.925 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.178 8.809 17.493 29.589 hybrid contribution 0.286 -0.625 -0.220 0.722 sum -21.892 8.184 17.273 29.062 Atomic orbital electron populations 1.20797 0.91181 1.02863 1.02314 1.19887 0.96056 0.93036 0.99574 1.21036 0.94294 0.97469 1.01179 1.21118 0.94294 0.97954 0.99811 1.20985 0.99925 0.91968 1.00631 1.19864 0.93802 0.94468 0.99780 1.19664 0.85755 0.94402 0.89141 0.88616 1.45149 1.33944 1.08603 1.51913 1.15753 0.80352 0.84392 0.78768 1.90907 1.63834 1.26036 1.66286 1.44764 1.31846 1.11382 1.50371 1.20783 0.95257 0.87040 0.97050 1.19678 0.86234 0.86543 0.85086 1.90532 1.70245 1.18620 1.66970 1.42120 1.28613 1.07639 1.43094 1.19435 1.04425 0.97726 1.22204 0.86115 1.25070 0.95879 0.98696 0.96323 1.69619 1.18358 1.34334 1.29068 0.86668 0.79262 0.84646 0.78908 1.19400 1.20004 1.19197 1.20903 0.96127 0.96621 0.93841 1.21865 0.97123 1.01787 0.98970 1.21879 1.00726 0.95709 1.00457 1.22023 0.99307 0.98171 1.00895 1.20860 0.93111 0.97787 1.00695 0.91175 0.91567 0.91457 0.86229 0.85949 0.85947 0.77001 0.75586 0.89946 0.89928 0.79243 0.91406 0.92553 0.92547 0.92425 0.92282 0.93772 0.91767 0.92071 0.92819 0.92536 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.09 -0.67 5.88 -104.62 -0.62 -1.29 16 3 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 4 C -0.11 -0.89 10.05 -39.58 -0.40 -1.29 16 5 C -0.12 -0.99 6.85 -39.59 -0.27 -1.26 16 6 C -0.08 -0.72 3.79 -104.63 -0.40 -1.11 16 7 C 0.22 2.26 1.81 -69.08 -0.13 2.13 16 8 H 0.10 1.16 7.44 -51.93 -0.39 0.77 16 9 N -0.74 -8.53 4.15 -59.81 -0.25 -8.78 16 10 C 0.71 10.58 6.92 -86.92 -0.60 9.98 16 11 O -0.59 -10.29 13.46 5.29 0.07 -10.22 16 12 N -0.73 -11.49 5.53 -66.41 -0.37 -11.86 16 13 C 0.13 2.20 6.15 -5.19 -0.03 2.17 16 14 C 0.44 9.62 7.85 -10.98 -0.09 9.54 16 15 O -0.58 -14.58 15.24 5.55 0.08 -14.50 16 16 N -0.58 -13.42 5.09 -10.96 -0.06 -13.47 16 17 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 18 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 19 C 0.04 1.19 5.50 -17.47 -0.10 1.10 16 20 N -0.87 -25.01 13.96 55.50 0.77 -24.24 16 21 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.29 6.52 56.52 0.37 -4.93 16 25 C -0.07 -0.72 0.62 -154.51 -0.10 -0.82 16 26 C -0.14 -1.18 8.07 37.16 0.30 -0.88 16 27 C -0.13 -1.56 7.00 37.16 0.26 -1.30 16 28 C -0.15 -1.33 7.24 37.15 0.27 -1.06 16 29 C -0.11 -0.91 8.36 -39.58 -0.33 -1.24 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.12 0.93 6.10 -52.49 -0.32 0.61 16 36 H 0.40 3.93 6.87 -40.82 -0.28 3.65 16 37 H 0.41 6.38 7.45 -40.82 -0.30 6.08 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 41 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.47 6.64 -51.93 -0.34 0.12 16 45 H 0.06 0.83 5.78 -51.93 -0.30 0.53 16 46 H 0.04 0.48 8.14 -51.94 -0.42 0.06 16 47 H 0.06 0.85 7.53 -51.93 -0.39 0.46 16 48 H 0.06 0.51 5.62 -51.93 -0.29 0.22 16 49 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.54 7.60 -51.93 -0.39 0.15 16 51 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -32.15 401.66 -8.67 -40.81 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -7.87 Total: 17.48 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -2.39 Total: 4.38 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.10 Total: -58.35 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.16 Total: -24.71 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.15 -8.67 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358270984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.916 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds