Wall clock time and date at job start Wed Apr 1 2020 04:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38254 * 119.99823 * 2 1 4 4 C 1.38216 * 119.99725 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00107 * 0.02562 * 4 3 2 6 6 C 1.38209 * 119.99877 * 359.69851 * 5 4 3 7 7 C 1.50698 * 120.00297 * 180.29937 * 6 5 4 8 8 H 1.09000 * 109.47511 * 200.25921 * 7 6 5 9 9 N 1.46506 * 109.46946 * 320.25600 * 7 6 5 10 10 C 1.34776 * 119.99993 * 204.99742 * 9 7 6 11 11 O 1.21589 * 120.00168 * 0.02562 * 10 9 7 12 12 N 1.34778 * 120.00076 * 179.97438 * 10 9 7 13 13 C 1.46498 * 119.99864 * 179.97438 * 12 10 9 14 14 C 1.50707 * 109.46676 * 180.02562 * 13 12 10 15 15 O 1.21284 * 120.00268 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99531 * 179.97438 * 14 13 12 17 17 C 1.37103 * 119.99846 * 180.02562 * 16 14 13 18 18 H 1.07999 * 119.99713 * 359.97438 * 17 16 14 19 19 C 1.38952 * 119.99941 * 180.02562 * 17 16 14 20 20 N 1.31414 * 119.99639 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00222 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47072 * 89.99934 * 21 19 17 23 23 H 1.48502 * 109.47070 * 209.99994 * 21 19 17 24 24 H 1.48503 * 109.46970 * 329.99882 * 21 19 17 25 25 C 1.53000 * 109.47234 * 80.25431 * 7 6 5 26 26 C 1.52998 * 109.46997 * 60.00233 * 25 7 6 27 27 C 1.52998 * 109.47396 * 180.02562 * 25 7 6 28 28 C 1.52994 * 109.46952 * 300.00523 * 25 7 6 29 29 C 1.38212 * 119.99857 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46665 * 270.01967 * 1 2 3 31 31 H 1.09001 * 109.47281 * 30.01624 * 1 2 3 32 32 H 1.08992 * 109.47193 * 150.02279 * 1 2 3 33 33 H 1.07997 * 120.00472 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.99686 * 179.97438 * 4 3 2 35 35 H 1.07999 * 120.00093 * 179.97438 * 5 4 3 36 36 H 0.97001 * 119.99979 * 24.99803 * 9 7 6 37 37 H 0.97000 * 119.99546 * 0.02562 * 12 10 9 38 38 H 1.08996 * 109.47392 * 299.99767 * 13 12 10 39 39 H 1.08998 * 109.46935 * 60.00658 * 13 12 10 40 40 H 0.97001 * 120.00765 * 0.02562 * 16 14 13 41 41 H 0.96997 * 119.99923 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47114 * 59.99682 * 26 25 7 43 43 H 1.08998 * 109.47476 * 180.02562 * 26 25 7 44 44 H 1.09003 * 109.47145 * 299.99947 * 26 25 7 45 45 H 1.09001 * 109.46806 * 59.99542 * 27 25 7 46 46 H 1.08989 * 109.47258 * 180.02562 * 27 25 7 47 47 H 1.09002 * 109.46679 * 300.00296 * 27 25 7 48 48 H 1.08995 * 109.47728 * 59.99783 * 28 25 7 49 49 H 1.09002 * 109.47333 * 180.02562 * 28 25 7 50 50 H 1.09001 * 109.47068 * 299.99448 * 28 25 7 51 51 H 1.08002 * 119.99812 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1969 0.0063 7 6 4.3341 -2.5020 0.0131 8 1 3.6810 -3.3005 -0.3389 9 7 5.4984 -2.3984 -0.8701 10 6 6.0247 -3.5085 -1.4244 11 8 5.5330 -4.5959 -1.1918 12 7 7.0954 -3.4131 -2.2374 13 6 7.6678 -4.6198 -2.8394 14 6 8.8474 -4.2417 -3.6978 15 8 9.1777 -3.0789 -3.7966 16 7 9.5358 -5.1960 -4.3550 17 6 10.6093 -4.8522 -5.1355 18 1 10.9029 -3.8167 -5.2241 19 6 11.3188 -5.8360 -5.8134 20 7 12.3473 -5.5063 -6.5620 21 14 10.8105 -7.6270 -5.6608 22 1 9.8261 -7.9544 -6.7232 23 1 12.0061 -8.4952 -5.8092 24 1 10.1954 -7.8551 -4.3285 25 6 4.8001 -2.8145 1.4365 26 6 3.5842 -2.9228 2.3589 27 6 5.5655 -4.1392 1.4434 28 6 5.7168 -1.6937 1.9306 29 6 2.1981 -1.1970 0.0005 30 1 -0.3632 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5134 33 1 1.6584 2.1326 0.0004 34 1 4.1204 2.1327 0.0001 35 1 5.3517 0.0000 0.0005 36 1 5.8904 -1.5308 -1.0560 37 1 7.4874 -2.5455 -2.4232 38 1 7.9948 -5.2987 -2.0519 39 1 6.9139 -5.1120 -3.4537 40 1 9.2720 -6.1261 -4.2757 41 1 12.8429 -6.1931 -7.0349 42 1 2.9310 -3.7212 2.0069 43 1 3.9161 -3.1450 3.3731 44 1 3.0392 -1.9788 2.3540 45 1 6.4317 -4.0617 0.7863 46 1 5.8970 -4.3621 2.4575 47 1 4.9126 -4.9379 1.0912 48 1 5.1719 -0.7498 1.9257 49 1 6.0492 -1.9165 2.9445 50 1 6.5831 -1.6166 1.2735 51 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358270984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:39 Heat of formation + Delta-G solvation = -70.136062 kcal Electronic energy + Delta-G solvation = -30811.964195 eV Core-core repulsion = 26710.076087 eV Total energy + Delta-G solvation = -4101.888108 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.86703 -40.67888 -39.96432 -38.19324 -36.25399 -35.25704 -34.72335 -33.82697 -33.45380 -32.19780 -29.48585 -28.53726 -27.94879 -27.42732 -27.00870 -25.81665 -23.13363 -22.06647 -21.64488 -21.45822 -20.58957 -19.73314 -19.50872 -17.83603 -17.48666 -17.15695 -16.93491 -16.76931 -16.30083 -16.13721 -15.87183 -15.68227 -15.36116 -15.01963 -14.90894 -14.80266 -14.48621 -14.35209 -14.23397 -13.99358 -13.91216 -13.66483 -13.47290 -13.05423 -12.97861 -12.95709 -12.86115 -12.70326 -12.50710 -12.44636 -12.33032 -12.02975 -12.00255 -11.81998 -11.65657 -11.57898 -11.39875 -11.24178 -10.64636 -10.33714 -10.26797 -9.84958 -9.62740 -9.45159 -8.45448 -6.07258 0.39824 0.49755 1.31178 1.34112 1.43692 1.63240 1.79569 2.17613 2.20507 2.78235 2.86137 3.10892 3.31712 3.54508 3.85992 3.91105 4.00442 4.03713 4.08966 4.15923 4.29048 4.40407 4.46253 4.47796 4.53035 4.59772 4.61928 4.80034 4.81565 4.86378 4.87630 4.95300 5.00655 5.05827 5.06822 5.12513 5.21794 5.28533 5.32996 5.33591 5.40610 5.48927 5.49098 5.54484 5.58664 5.70403 5.74947 5.88548 5.96564 6.12890 6.49202 6.78452 7.02938 7.29050 7.57772 7.78750 8.70973 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.002146 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.557164 B =13042.084222 C =13593.171001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.086 4.086 7 C 0.219 3.781 8 H 0.078 0.922 9 N -0.727 5.727 10 C 0.709 3.291 11 O -0.615 6.615 12 N -0.730 5.730 13 C 0.141 3.859 14 C 0.446 3.554 15 O -0.614 6.614 16 N -0.578 5.578 17 C -0.330 4.330 18 H 0.063 0.937 19 C -0.009 4.009 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.233 1.233 25 C -0.070 4.070 26 C -0.134 4.134 27 C -0.124 4.124 28 C -0.142 4.142 29 C -0.116 4.116 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.404 0.596 37 H 0.407 0.593 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.392 0.608 41 H 0.281 0.719 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.036 0.964 46 H 0.052 0.948 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.048 0.952 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.524 8.494 19.139 32.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.143 4.143 6 C -0.087 4.087 7 C 0.114 3.886 8 H 0.096 0.904 9 N -0.383 5.383 10 C 0.409 3.591 11 O -0.496 6.496 12 N -0.387 5.387 13 C 0.012 3.988 14 C 0.233 3.767 15 O -0.500 6.500 16 N -0.218 5.218 17 C -0.459 4.459 18 H 0.081 0.919 19 C -0.209 4.209 20 N -0.566 5.566 21 Si 0.779 3.221 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.156 1.156 25 C -0.072 4.072 26 C -0.192 4.192 27 C -0.182 4.182 28 C -0.199 4.199 29 C -0.135 4.135 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.240 0.760 37 H 0.244 0.756 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.228 0.772 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.076 0.924 50 H 0.067 0.933 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -24.562 8.208 19.121 32.191 hybrid contribution 0.984 -0.253 -0.695 1.231 sum -23.578 7.955 18.426 30.963 Atomic orbital electron populations 1.20835 0.89735 1.03415 1.03089 1.20165 0.97243 0.92809 0.98929 1.21336 0.94441 0.98221 1.00422 1.21372 0.94665 0.98363 0.99277 1.21091 1.00289 0.92049 1.00906 1.19741 0.94011 0.93843 1.01113 1.19664 0.85010 0.94858 0.89049 0.90386 1.45093 1.33826 1.08108 1.51237 1.15788 0.79959 0.84813 0.78556 1.90893 1.64441 1.27144 1.67081 1.44737 1.32280 1.10920 1.50799 1.20658 0.93422 0.87827 0.96879 1.20533 0.86417 0.85719 0.83994 1.90520 1.71321 1.20376 1.67808 1.41925 1.27953 1.08818 1.43150 1.19021 1.06690 0.95715 1.24482 0.91869 1.26073 0.95252 1.04525 0.95063 1.69781 1.19937 1.36613 1.30237 0.85446 0.79263 0.76566 0.80858 1.18099 1.19822 1.15602 1.20869 0.96675 0.95751 0.93858 1.21810 0.96408 1.02103 0.98850 1.21796 0.99683 0.96440 1.00265 1.21980 0.98868 0.98224 1.00862 1.20992 0.93002 0.98472 1.01002 0.90220 0.90657 0.91303 0.84408 0.84313 0.85466 0.75975 0.75552 0.88186 0.88117 0.77247 0.90942 0.92617 0.91852 0.91845 0.94510 0.92862 0.93387 0.91131 0.92377 0.93310 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.09 -1.26 5.88 -19.86 -0.12 -1.38 16 3 C -0.13 -1.64 9.70 22.27 0.22 -1.42 16 4 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 5 C -0.13 -1.93 6.85 22.27 0.15 -1.77 16 6 C -0.09 -1.48 3.79 -19.87 -0.08 -1.55 16 7 C 0.22 4.44 1.81 44.24 0.08 4.52 16 8 H 0.08 1.88 7.44 -2.39 -0.02 1.86 16 9 N -0.73 -16.33 4.15 -461.40 -1.92 -18.24 16 10 C 0.71 20.72 6.92 179.05 1.24 21.96 16 11 O -0.61 -20.94 13.46 -4.00 -0.05 -20.99 16 12 N -0.73 -22.54 5.53 -482.29 -2.67 -25.21 16 13 C 0.14 4.66 6.15 85.64 0.53 5.18 16 14 C 0.45 19.51 7.85 87.66 0.69 20.19 16 15 O -0.61 -31.70 15.24 -3.04 -0.05 -31.75 16 16 N -0.58 -26.71 5.09 -306.98 -1.56 -28.27 16 17 C -0.33 -18.79 10.16 84.04 0.85 -17.94 16 18 H 0.06 4.25 7.39 -2.91 -0.02 4.22 16 19 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 20 N -0.93 -54.56 13.96 21.66 0.30 -54.25 16 21 Si 0.96 38.31 27.74 68.60 1.90 40.22 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 24 H -0.23 -7.95 6.52 99.48 0.65 -7.31 16 25 C -0.07 -1.31 0.62 -52.18 -0.03 -1.34 16 26 C -0.13 -2.08 8.07 71.98 0.58 -1.50 16 27 C -0.12 -2.92 7.00 71.98 0.50 -2.42 16 28 C -0.14 -2.39 7.24 71.98 0.52 -1.86 16 29 C -0.12 -1.85 8.36 22.27 0.19 -1.66 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 32 H 0.07 0.62 8.08 -2.39 -0.02 0.60 16 33 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.13 1.76 6.10 -2.91 -0.02 1.74 16 36 H 0.40 7.73 6.87 -92.71 -0.64 7.10 16 37 H 0.41 12.68 7.45 -92.71 -0.69 11.99 16 38 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.39 15.23 5.76 -92.71 -0.53 14.69 16 41 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 0.92 6.64 -2.39 -0.02 0.91 16 45 H 0.04 1.02 5.78 -2.39 -0.01 1.00 16 46 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.05 1.27 7.53 -2.39 -0.02 1.25 16 48 H 0.07 1.06 5.62 -2.39 -0.01 1.05 16 49 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.05 0.89 7.60 -2.39 -0.02 0.87 16 51 H 0.13 1.83 8.04 -2.91 -0.02 1.80 16 Total: -1.00 -72.64 401.66 1.74 -70.91 By element: Atomic # 1 Polarization: 51.32 SS G_CDS: -0.95 Total: 50.37 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: 6.73 Total: 17.22 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -5.84 Total: -125.98 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -0.10 Total: -52.74 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 1.90 Total: 40.22 kcal Total: -72.64 1.74 -70.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358270984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.771 kcal (2) G-P(sol) polarization free energy of solvation -72.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds