Wall clock time and date at job start Wed Apr 1 2020 04:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38121 * 119.96654 * 2 1 4 4 C 1.38909 * 119.92149 * 180.20798 * 3 2 1 5 5 N 1.39730 * 120.07156 * 179.76583 * 4 3 2 6 6 C 1.34772 * 120.00039 * 214.39737 * 5 4 3 7 7 O 1.21375 * 120.00037 * 5.30269 * 6 5 4 8 8 C 1.49353 * 120.00244 * 185.29437 * 6 5 4 9 9 O 1.21362 * 119.99558 * 5.71701 * 8 6 5 10 10 N 1.34776 * 120.00010 * 185.71360 * 8 6 5 11 11 C 1.46494 * 120.00091 * 5.68631 * 10 8 6 12 12 C 1.46500 * 119.99682 * 185.68101 * 10 8 6 13 13 H 1.09007 * 109.47297 * 0.02562 * 12 10 8 14 14 C 1.52994 * 109.47645 * 240.00393 * 12 10 8 15 15 C 1.50709 * 109.46970 * 119.99951 * 12 10 8 16 16 H 1.08000 * 119.99677 * 5.31528 * 15 12 10 17 17 C 1.37877 * 120.00067 * 185.30947 * 15 12 10 18 18 N 1.31509 * 119.99528 * 184.88953 * 17 15 12 19 19 Si 1.86794 * 120.00015 * 5.16317 * 17 15 12 20 20 H 1.48508 * 109.47053 * 269.72708 * 19 17 15 21 21 H 1.48495 * 109.47446 * 29.72505 * 19 17 15 22 22 H 1.48502 * 109.47233 * 149.72741 * 19 17 15 23 23 C 1.38945 * 119.84986 * 359.49986 * 4 3 2 24 24 C 1.38072 * 119.92420 * 0.27235 * 23 4 3 25 25 C 1.38277 * 119.95947 * 179.73157 * 2 1 3 26 26 C 1.50702 * 119.92502 * 0.02562 * 25 2 1 27 27 N 1.46895 * 109.47165 * 80.02235 * 26 25 2 28 28 C 1.46902 * 111.00066 * 66.04673 * 27 26 25 29 29 C 1.46900 * 111.00247 * 190.00440 * 27 26 25 30 30 H 1.09003 * 109.46985 * 270.27704 * 1 2 3 31 31 H 1.09009 * 109.46914 * 30.26910 * 1 2 3 32 32 H 1.08999 * 109.47720 * 150.27055 * 1 2 3 33 33 H 1.08004 * 120.03584 * 0.02562 * 3 2 1 34 34 H 0.96997 * 119.99486 * 34.40742 * 5 4 3 35 35 H 1.08999 * 109.46945 * 275.70347 * 11 10 8 36 36 H 1.08992 * 109.47226 * 35.70713 * 11 10 8 37 37 H 1.09001 * 109.46873 * 155.71096 * 11 10 8 38 38 H 1.09001 * 109.46838 * 294.91412 * 14 12 10 39 39 H 1.08995 * 109.47381 * 54.90863 * 14 12 10 40 40 H 1.08999 * 109.47609 * 174.91637 * 14 12 10 41 41 H 0.96994 * 120.00433 * 355.26790 * 18 17 15 42 42 H 1.07999 * 120.03550 * 180.29310 * 23 4 3 43 43 H 1.08002 * 119.95981 * 180.02562 * 24 23 4 44 44 H 1.08993 * 109.47315 * 200.02630 * 26 25 2 45 45 H 1.09007 * 109.46771 * 320.02361 * 26 25 2 46 46 H 1.09007 * 109.46725 * 59.99656 * 28 27 26 47 47 H 1.08994 * 109.47171 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.46761 * 300.00477 * 28 27 26 49 49 H 1.08991 * 109.47289 * 59.99899 * 29 27 26 50 50 H 1.08997 * 109.46923 * 180.02562 * 29 27 26 51 51 H 1.09002 * 109.46516 * 300.00006 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1966 0.0000 4 6 3.5860 1.1955 -0.0044 5 7 4.2871 2.4042 -0.0093 6 6 5.4562 2.5023 -0.6726 7 8 5.8527 1.5725 -1.3444 8 6 6.2638 3.7553 -0.5811 9 8 5.9212 4.6444 0.1706 10 7 7.3729 3.8986 -1.3333 11 6 7.7183 2.8821 -2.3300 12 6 8.2329 5.0710 -1.1541 13 1 7.8182 5.7102 -0.3745 14 6 8.3103 5.8523 -2.4672 15 6 9.6152 4.6235 -0.7536 16 1 9.8554 3.5708 -0.7269 17 6 10.5731 5.5578 -0.4215 18 7 11.8047 5.1743 -0.1655 19 14 10.1197 7.3675 -0.3276 20 1 10.3281 7.9995 -1.6552 21 1 8.6940 7.5009 0.0657 22 1 10.9766 8.0408 0.6812 23 6 4.2766 -0.0101 0.0018 24 6 3.5806 -1.2026 0.0065 25 6 2.1975 -1.1980 0.0056 26 6 1.4414 -2.5016 0.0111 27 7 0.9886 -2.8108 -1.3517 28 6 2.1299 -3.0726 -2.2389 29 6 0.0518 -3.9423 -1.3512 30 1 -0.3633 0.0050 1.0277 31 1 -0.3633 0.8876 -0.5181 32 1 -0.3634 -0.8924 -0.5096 33 1 1.6569 2.1319 0.0004 34 1 3.9323 3.1724 0.4647 35 1 8.2635 2.0709 -1.8477 36 1 6.8064 2.4900 -2.7801 37 1 8.3423 3.3294 -3.1038 38 1 8.8076 5.2443 -3.2230 39 1 7.3031 6.0980 -2.8037 40 1 8.8754 6.7712 -2.3106 41 1 12.0238 4.2297 -0.1429 42 1 5.3566 -0.0145 0.0032 43 1 4.1169 -2.1401 0.0118 44 1 2.0941 -3.2987 0.3668 45 1 0.5776 -2.4177 0.6707 46 1 2.6986 -3.9211 -1.8584 47 1 1.7664 -3.2992 -3.2411 48 1 2.7714 -2.1920 -2.2750 49 1 -0.8173 -3.6942 -0.7421 50 1 -0.2672 -4.1503 -2.3725 51 1 0.5453 -4.8223 -0.9387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411398506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:54 Heat of formation + Delta-G solvation = -22.800446 kcal Electronic energy + Delta-G solvation = -30647.405333 eV Core-core repulsion = 26547.569851 eV Total energy + Delta-G solvation = -4099.835482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.98307 -39.77801 -38.37369 -37.23378 -36.02390 -34.84262 -32.78732 -32.64303 -30.97328 -30.35031 -27.90577 -27.67725 -26.64996 -26.28198 -25.02082 -24.37168 -22.54680 -22.41053 -21.27627 -20.00393 -19.25484 -17.74288 -17.52599 -16.96957 -16.41787 -16.17607 -15.93265 -15.81831 -15.62295 -15.12806 -14.76683 -14.44770 -14.09532 -13.95216 -13.69357 -13.62515 -13.25818 -13.15842 -12.87400 -12.71764 -12.61654 -12.54210 -12.42912 -12.30083 -12.06677 -11.95284 -11.91385 -11.84437 -11.74028 -11.40092 -11.31860 -11.19846 -10.92315 -10.59737 -10.29055 -10.08012 -9.78970 -9.06031 -8.96134 -8.84067 -8.72986 -8.56772 -8.15957 -7.96291 -6.53358 -4.22947 0.98256 1.27955 1.82148 2.58628 3.31024 3.36679 3.42408 3.54593 3.59707 3.86453 3.90032 4.39229 4.50990 4.59001 4.66180 4.78964 4.83513 4.93694 5.00180 5.12601 5.15055 5.19636 5.24395 5.31010 5.34485 5.44997 5.46394 5.51229 5.64845 5.70485 5.72210 5.81933 5.94696 6.06397 6.15750 6.17605 6.23055 6.28404 6.32448 6.39398 6.46192 6.49889 6.64463 6.68138 6.77614 6.84672 6.93584 7.11990 7.20853 7.65723 7.82728 8.06756 8.26151 8.41483 8.78753 9.47764 10.84959 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024680 B = 0.002116 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.265045 B =13232.274899 C =13700.282711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.042 4.042 3 C -0.147 4.147 4 C 0.157 3.843 5 N -0.653 5.653 6 C 0.509 3.491 7 O -0.496 6.496 8 C 0.495 3.505 9 O -0.537 6.537 10 N -0.547 5.547 11 C 0.087 3.913 12 C 0.225 3.775 13 H 0.065 0.935 14 C -0.159 4.159 15 C -0.605 4.605 16 H 0.063 0.937 17 C 0.033 3.967 18 N -0.904 5.904 19 Si 1.049 2.951 20 H -0.281 1.281 21 H -0.274 1.274 22 H -0.286 1.286 23 C -0.125 4.125 24 C -0.089 4.089 25 C -0.102 4.102 26 C 0.097 3.903 27 N -0.541 5.541 28 C 0.022 3.978 29 C 0.023 3.977 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.422 0.578 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.033 0.967 40 H 0.057 0.943 41 H 0.269 0.731 42 H 0.134 0.866 43 H 0.121 0.879 44 H 0.041 0.959 45 H 0.083 0.917 46 H 0.025 0.975 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.069 -14.973 -1.807 28.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.044 4.044 3 C -0.167 4.167 4 C 0.063 3.937 5 N -0.300 5.300 6 C 0.292 3.708 7 O -0.369 6.369 8 C 0.276 3.724 9 O -0.416 6.416 10 N -0.277 5.277 11 C -0.056 4.056 12 C 0.124 3.876 13 H 0.083 0.917 14 C -0.217 4.217 15 C -0.644 4.644 16 H 0.082 0.918 17 C -0.172 4.172 18 N -0.538 5.538 19 Si 0.878 3.122 20 H -0.208 1.208 21 H -0.200 1.200 22 H -0.213 1.213 23 C -0.145 4.145 24 C -0.109 4.109 25 C -0.103 4.103 26 C -0.030 4.030 27 N -0.264 5.264 28 C -0.126 4.126 29 C -0.125 4.125 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.145 0.855 34 H 0.259 0.741 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.152 0.848 43 H 0.139 0.861 44 H 0.059 0.941 45 H 0.101 0.899 46 H 0.043 0.957 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -23.462 -13.211 -1.851 26.989 hybrid contribution -0.045 -1.994 0.208 2.006 sum -23.507 -15.205 -1.643 28.044 Atomic orbital electron populations 1.20853 0.90891 1.03667 1.01941 1.19437 0.95982 0.91479 0.97462 1.20788 0.91781 0.98529 1.05602 1.17733 0.90816 0.85476 0.99696 1.43270 1.21682 1.13221 1.51783 1.20770 0.81425 0.89443 0.79159 1.90730 1.68809 1.40062 1.37329 1.19651 0.82892 0.86781 0.83060 1.90714 1.69912 1.41566 1.39412 1.47956 1.21572 1.23877 1.34293 1.21909 1.01245 0.90856 0.91570 1.19631 0.90403 0.82962 0.94623 0.91698 1.22410 0.99174 1.00380 0.99782 1.22230 0.95133 0.95809 1.51180 0.91844 1.25721 0.92819 1.05765 0.92906 1.70812 1.18168 1.19013 1.45821 0.83947 0.76122 0.75073 0.77043 1.20783 1.19995 1.21280 1.21093 1.00924 0.90774 1.01748 1.20869 0.93232 0.97592 0.99160 1.19494 0.93111 0.94148 1.03588 1.21000 0.98387 0.93585 0.90020 1.61996 1.16432 1.38976 1.09033 1.22432 0.92806 1.00710 0.96671 1.22400 0.96243 0.91443 1.02425 0.91565 0.91777 0.89916 0.85547 0.74052 0.92513 0.90736 0.91069 0.92490 0.94781 0.92484 0.92123 0.84834 0.86068 0.94084 0.89868 0.95673 0.91492 0.90711 0.91347 0.91267 0.95700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.25 36.00 0.33 -0.55 16 2 C -0.04 -0.42 5.88 -104.65 -0.62 -1.04 16 3 C -0.15 -1.61 9.62 -39.38 -0.38 -1.98 16 4 C 0.16 2.05 6.25 -83.75 -0.52 1.53 16 5 N -0.65 -9.20 5.31 -10.30 -0.05 -9.25 16 6 C 0.51 8.72 7.43 -11.63 -0.09 8.63 16 7 O -0.50 -8.86 11.16 5.47 0.06 -8.80 16 8 C 0.50 10.04 7.72 -11.63 -0.09 9.95 16 9 O -0.54 -11.81 15.85 5.49 0.09 -11.72 16 10 N -0.55 -11.70 2.75 -175.81 -0.48 -12.19 16 11 C 0.09 1.63 8.37 59.84 0.50 2.13 16 12 C 0.22 5.40 2.20 -69.08 -0.15 5.25 16 13 H 0.07 1.68 5.42 -51.92 -0.28 1.40 16 14 C -0.16 -3.36 8.67 37.15 0.32 -3.04 16 15 C -0.61 -16.62 8.77 -34.44 -0.30 -16.92 16 16 H 0.06 1.87 7.79 -52.49 -0.41 1.47 16 17 C 0.03 0.95 5.43 -17.82 -0.10 0.85 16 18 N -0.90 -27.28 13.70 55.43 0.76 -26.52 16 19 Si 1.05 25.07 25.28 -169.99 -4.30 20.78 16 20 H -0.28 -6.26 6.82 56.52 0.39 -5.88 16 21 H -0.27 -6.28 6.35 56.52 0.36 -5.92 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C -0.13 -1.66 8.65 -39.38 -0.34 -2.00 16 24 C -0.09 -0.98 8.72 -39.61 -0.35 -1.33 16 25 C -0.10 -1.01 4.58 -104.58 -0.48 -1.49 16 26 C 0.10 0.77 4.22 -4.98 -0.02 0.75 16 27 N -0.54 -4.30 4.35 -252.72 -1.10 -5.39 16 28 C 0.02 0.18 9.27 60.07 0.56 0.74 16 29 C 0.02 0.14 9.57 60.06 0.57 0.71 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.09 -51.92 -0.42 0.04 16 32 H 0.08 0.62 6.33 -51.93 -0.33 0.30 16 33 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.42 5.28 8.32 -40.82 -0.34 4.94 16 35 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 36 H 0.07 1.27 6.00 -51.93 -0.31 0.96 16 37 H 0.07 1.29 6.54 -51.93 -0.34 0.95 16 38 H 0.06 1.15 6.87 -51.93 -0.36 0.79 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 1.21 4.40 -51.93 -0.23 0.98 16 41 H 0.27 8.08 8.72 -40.82 -0.36 7.73 16 42 H 0.13 1.98 6.52 -52.49 -0.34 1.64 16 43 H 0.12 1.14 8.03 -52.49 -0.42 0.72 16 44 H 0.04 0.31 7.98 -51.93 -0.41 -0.10 16 45 H 0.08 0.57 7.19 -51.93 -0.37 0.20 16 46 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 47 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 48 H 0.07 0.73 6.65 -51.93 -0.35 0.38 16 49 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 50 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 51 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 LS Contribution 401.19 15.07 6.05 6.05 Total: -1.00 -31.68 401.19 -8.04 -39.72 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.92 Total: 5.16 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.14 Total: 2.17 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.88 Total: -53.36 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: 0.15 Total: -20.52 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -4.30 Total: 20.78 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.68 -8.04 -39.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411398506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.922 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds