Wall clock time and date at job start Wed Apr 1 2020 04:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38121 * 119.96654 * 2 1 4 4 C 1.38909 * 119.92149 * 180.20798 * 3 2 1 5 5 N 1.39730 * 120.07156 * 179.76583 * 4 3 2 6 6 C 1.34772 * 120.00039 * 214.39737 * 5 4 3 7 7 O 1.21375 * 120.00037 * 5.30269 * 6 5 4 8 8 C 1.49353 * 120.00244 * 185.29437 * 6 5 4 9 9 O 1.21362 * 119.99558 * 5.71701 * 8 6 5 10 10 N 1.34776 * 120.00010 * 185.71360 * 8 6 5 11 11 C 1.46494 * 120.00091 * 5.68631 * 10 8 6 12 12 C 1.46500 * 119.99682 * 185.68101 * 10 8 6 13 13 H 1.09007 * 109.47297 * 0.02562 * 12 10 8 14 14 C 1.52994 * 109.47645 * 240.00393 * 12 10 8 15 15 C 1.50709 * 109.46970 * 119.99951 * 12 10 8 16 16 H 1.08000 * 119.99677 * 5.31528 * 15 12 10 17 17 C 1.37877 * 120.00067 * 185.30947 * 15 12 10 18 18 N 1.31509 * 119.99528 * 184.88953 * 17 15 12 19 19 Si 1.86794 * 120.00015 * 5.16317 * 17 15 12 20 20 H 1.48508 * 109.47053 * 269.72708 * 19 17 15 21 21 H 1.48495 * 109.47446 * 29.72505 * 19 17 15 22 22 H 1.48502 * 109.47233 * 149.72741 * 19 17 15 23 23 C 1.38945 * 119.84986 * 359.49986 * 4 3 2 24 24 C 1.38072 * 119.92420 * 0.27235 * 23 4 3 25 25 C 1.38277 * 119.95947 * 179.73157 * 2 1 3 26 26 C 1.50702 * 119.92502 * 0.02562 * 25 2 1 27 27 N 1.46895 * 109.47165 * 80.02235 * 26 25 2 28 28 C 1.46902 * 111.00066 * 66.04673 * 27 26 25 29 29 C 1.46900 * 111.00247 * 190.00440 * 27 26 25 30 30 H 1.09003 * 109.46985 * 270.27704 * 1 2 3 31 31 H 1.09009 * 109.46914 * 30.26910 * 1 2 3 32 32 H 1.08999 * 109.47720 * 150.27055 * 1 2 3 33 33 H 1.08004 * 120.03584 * 0.02562 * 3 2 1 34 34 H 0.96997 * 119.99486 * 34.40742 * 5 4 3 35 35 H 1.08999 * 109.46945 * 275.70347 * 11 10 8 36 36 H 1.08992 * 109.47226 * 35.70713 * 11 10 8 37 37 H 1.09001 * 109.46873 * 155.71096 * 11 10 8 38 38 H 1.09001 * 109.46838 * 294.91412 * 14 12 10 39 39 H 1.08995 * 109.47381 * 54.90863 * 14 12 10 40 40 H 1.08999 * 109.47609 * 174.91637 * 14 12 10 41 41 H 0.96994 * 120.00433 * 355.26790 * 18 17 15 42 42 H 1.07999 * 120.03550 * 180.29310 * 23 4 3 43 43 H 1.08002 * 119.95981 * 180.02562 * 24 23 4 44 44 H 1.08993 * 109.47315 * 200.02630 * 26 25 2 45 45 H 1.09007 * 109.46771 * 320.02361 * 26 25 2 46 46 H 1.09007 * 109.46725 * 59.99656 * 28 27 26 47 47 H 1.08994 * 109.47171 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.46761 * 300.00477 * 28 27 26 49 49 H 1.08991 * 109.47289 * 59.99899 * 29 27 26 50 50 H 1.08997 * 109.46923 * 180.02562 * 29 27 26 51 51 H 1.09002 * 109.46516 * 300.00006 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1966 0.0000 4 6 3.5860 1.1955 -0.0044 5 7 4.2871 2.4042 -0.0093 6 6 5.4562 2.5023 -0.6726 7 8 5.8527 1.5725 -1.3444 8 6 6.2638 3.7553 -0.5811 9 8 5.9212 4.6444 0.1706 10 7 7.3729 3.8986 -1.3333 11 6 7.7183 2.8821 -2.3300 12 6 8.2329 5.0710 -1.1541 13 1 7.8182 5.7102 -0.3745 14 6 8.3103 5.8523 -2.4672 15 6 9.6152 4.6235 -0.7536 16 1 9.8554 3.5708 -0.7269 17 6 10.5731 5.5578 -0.4215 18 7 11.8047 5.1743 -0.1655 19 14 10.1197 7.3675 -0.3276 20 1 10.3281 7.9995 -1.6552 21 1 8.6940 7.5009 0.0657 22 1 10.9766 8.0408 0.6812 23 6 4.2766 -0.0101 0.0018 24 6 3.5806 -1.2026 0.0065 25 6 2.1975 -1.1980 0.0056 26 6 1.4414 -2.5016 0.0111 27 7 0.9886 -2.8108 -1.3517 28 6 2.1299 -3.0726 -2.2389 29 6 0.0518 -3.9423 -1.3512 30 1 -0.3633 0.0050 1.0277 31 1 -0.3633 0.8876 -0.5181 32 1 -0.3634 -0.8924 -0.5096 33 1 1.6569 2.1319 0.0004 34 1 3.9323 3.1724 0.4647 35 1 8.2635 2.0709 -1.8477 36 1 6.8064 2.4900 -2.7801 37 1 8.3423 3.3294 -3.1038 38 1 8.8076 5.2443 -3.2230 39 1 7.3031 6.0980 -2.8037 40 1 8.8754 6.7712 -2.3106 41 1 12.0238 4.2297 -0.1429 42 1 5.3566 -0.0145 0.0032 43 1 4.1169 -2.1401 0.0118 44 1 2.0941 -3.2987 0.3668 45 1 0.5776 -2.4177 0.6707 46 1 2.6986 -3.9211 -1.8584 47 1 1.7664 -3.2992 -3.2411 48 1 2.7714 -2.1920 -2.2750 49 1 -0.8173 -3.6942 -0.7421 50 1 -0.2672 -4.1503 -2.3725 51 1 0.5453 -4.8223 -0.9387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411398506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:53 Heat of formation + Delta-G solvation = -44.025313 kcal Electronic energy + Delta-G solvation = -30648.325712 eV Core-core repulsion = 26547.569851 eV Total energy + Delta-G solvation = -4100.755861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.28026 -40.87876 -39.70149 -38.10057 -37.62629 -36.04334 -34.80559 -33.47112 -32.23161 -31.83558 -28.49876 -28.45128 -28.01481 -27.36862 -26.83596 -25.79911 -23.45420 -23.37407 -22.40573 -21.19901 -20.72605 -19.66170 -19.08090 -18.31152 -17.78626 -17.28683 -16.91998 -16.86278 -16.48172 -16.36727 -15.81292 -15.64122 -15.37444 -15.13970 -15.01628 -14.69821 -14.50415 -14.43313 -14.32778 -14.00703 -13.88755 -13.54700 -13.45486 -13.31181 -13.22990 -13.11608 -13.06758 -12.94331 -12.59163 -12.54330 -12.50421 -12.38476 -12.04083 -12.01797 -11.88226 -11.65163 -11.32845 -11.05282 -10.71737 -10.50991 -9.79349 -9.70363 -9.34752 -9.06464 -8.77257 -6.49398 -0.11329 0.40474 0.53707 1.21662 1.40616 1.52979 1.68254 1.99752 2.41003 2.44744 2.65289 3.01523 3.17989 3.23338 3.80721 3.84997 3.99074 4.20579 4.24681 4.30496 4.33550 4.35998 4.41316 4.45528 4.49978 4.59864 4.63147 4.64215 4.66930 4.76414 4.79621 4.83397 4.90783 4.94503 4.95878 4.98588 5.05315 5.07659 5.14258 5.19891 5.27303 5.38710 5.43785 5.45969 5.66375 5.68455 5.88999 5.95693 6.00526 6.05793 6.12564 6.30333 6.43962 6.61739 6.84364 7.29968 8.57902 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024680 B = 0.002116 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.265045 B =13232.274899 C =13700.282711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.044 4.044 3 C -0.142 4.142 4 C 0.132 3.868 5 N -0.636 5.636 6 C 0.515 3.485 7 O -0.508 6.508 8 C 0.492 3.508 9 O -0.556 6.556 10 N -0.559 5.559 11 C 0.094 3.906 12 C 0.225 3.775 13 H 0.049 0.951 14 C -0.153 4.153 15 C -0.602 4.602 16 H 0.028 0.972 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 1.084 2.916 20 H -0.249 1.249 21 H -0.260 1.260 22 H -0.289 1.289 23 C -0.145 4.145 24 C -0.092 4.092 25 C -0.096 4.096 26 C 0.099 3.901 27 N -0.550 5.550 28 C 0.024 3.976 29 C 0.023 3.977 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.429 0.571 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.253 0.747 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.045 0.955 45 H 0.100 0.900 46 H 0.029 0.971 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.080 0.920 50 H 0.073 0.927 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.589 -15.070 -2.404 31.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.046 4.046 3 C -0.162 4.162 4 C 0.039 3.961 5 N -0.283 5.283 6 C 0.297 3.703 7 O -0.383 6.383 8 C 0.274 3.726 9 O -0.436 6.436 10 N -0.289 5.289 11 C -0.048 4.048 12 C 0.123 3.877 13 H 0.067 0.933 14 C -0.211 4.211 15 C -0.640 4.640 16 H 0.046 0.954 17 C -0.214 4.214 18 N -0.570 5.570 19 Si 0.906 3.094 20 H -0.174 1.174 21 H -0.184 1.184 22 H -0.216 1.216 23 C -0.165 4.165 24 C -0.111 4.111 25 C -0.097 4.097 26 C -0.028 4.028 27 N -0.273 5.273 28 C -0.124 4.124 29 C -0.124 4.124 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.164 0.836 34 H 0.268 0.732 35 H 0.060 0.940 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.063 0.937 45 H 0.118 0.882 46 H 0.047 0.953 47 H 0.092 0.908 48 H 0.073 0.927 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -27.032 -13.349 -2.457 30.248 hybrid contribution 0.932 -2.160 0.453 2.395 sum -26.100 -15.509 -2.004 30.426 Atomic orbital electron populations 1.20882 0.88712 1.04188 1.03134 1.19813 0.97515 0.90989 0.96236 1.21016 0.90752 0.99931 1.04540 1.17897 0.91696 0.84608 1.01902 1.43093 1.20466 1.14054 1.50687 1.20109 0.82178 0.88030 0.79936 1.90726 1.69333 1.39886 1.38343 1.20171 0.82783 0.87586 0.82076 1.90686 1.70483 1.42571 1.39904 1.47976 1.21851 1.23874 1.35245 1.21929 1.02069 0.89836 0.90936 1.19408 0.88509 0.83952 0.95877 0.93322 1.22279 1.00989 0.99885 0.97946 1.22364 0.97250 0.94079 1.50346 0.95395 1.27092 0.92296 1.09911 0.92135 1.70934 1.19641 1.17959 1.48507 0.83536 0.76559 0.70677 0.78632 1.17400 1.18435 1.21600 1.21030 1.00002 0.92011 1.03428 1.21002 0.94001 0.97209 0.98902 1.19786 0.92717 0.95419 1.01794 1.21028 0.98856 0.92422 0.90511 1.61988 1.16431 1.40171 1.08757 1.22382 0.92852 0.99883 0.97330 1.22450 0.96080 0.90802 1.03104 0.89910 0.91049 0.89618 0.83606 0.73202 0.94014 0.88828 0.90541 0.91935 0.92086 0.92345 0.93753 0.87202 0.85018 0.93728 0.88205 0.95279 0.90805 0.92704 0.90114 0.90795 0.95371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.25 71.23 0.66 -0.66 16 2 C -0.04 -0.78 5.88 -19.88 -0.12 -0.89 16 3 C -0.14 -2.85 9.62 22.40 0.22 -2.63 16 4 C 0.13 3.39 6.25 38.21 0.24 3.63 16 5 N -0.64 -17.72 5.31 -304.84 -1.62 -19.34 16 6 C 0.52 17.75 7.43 87.24 0.65 18.40 16 7 O -0.51 -18.42 11.16 -3.33 -0.04 -18.46 16 8 C 0.49 20.01 7.72 87.24 0.67 20.68 16 9 O -0.56 -24.44 15.85 -3.28 -0.05 -24.49 16 10 N -0.56 -24.05 2.75 -828.51 -2.28 -26.33 16 11 C 0.09 3.56 8.37 127.77 1.07 4.63 16 12 C 0.22 10.75 2.20 44.25 0.10 10.85 16 13 H 0.05 2.50 5.42 -2.38 -0.01 2.49 16 14 C -0.15 -6.17 8.67 71.98 0.62 -5.55 16 15 C -0.60 -33.89 8.77 25.60 0.22 -33.66 16 16 H 0.03 1.73 7.79 -2.91 -0.02 1.70 16 17 C -0.02 -0.90 5.43 84.66 0.46 -0.44 16 18 N -0.93 -58.04 13.70 21.45 0.29 -57.74 16 19 Si 1.08 49.88 25.28 68.60 1.73 51.62 16 20 H -0.25 -10.18 6.82 99.48 0.68 -9.50 16 21 H -0.26 -11.26 6.35 99.48 0.63 -10.63 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 23 C -0.14 -3.88 8.65 22.40 0.19 -3.69 16 24 C -0.09 -1.97 8.72 22.25 0.19 -1.78 16 25 C -0.10 -1.73 4.58 -19.84 -0.09 -1.82 16 26 C 0.10 1.31 4.22 85.56 0.36 1.67 16 27 N -0.55 -7.39 4.35 -953.48 -4.14 -11.54 16 28 C 0.02 0.35 9.27 127.69 1.18 1.54 16 29 C 0.02 0.21 9.57 127.69 1.22 1.43 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.76 8.09 -2.38 -0.02 0.74 16 32 H 0.09 0.99 6.33 -2.39 -0.02 0.97 16 33 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.43 10.45 8.32 -92.71 -0.77 9.67 16 35 H 0.04 1.67 8.09 -2.39 -0.02 1.65 16 36 H 0.09 3.16 6.00 -2.39 -0.01 3.15 16 37 H 0.08 2.75 6.54 -2.39 -0.02 2.74 16 38 H 0.06 2.43 6.87 -2.39 -0.02 2.41 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.06 2.33 4.40 -2.39 -0.01 2.32 16 41 H 0.25 16.00 8.72 -92.71 -0.81 15.19 16 42 H 0.11 3.44 6.52 -2.91 -0.02 3.42 16 43 H 0.13 2.43 8.03 -2.91 -0.02 2.41 16 44 H 0.04 0.57 7.98 -2.39 -0.02 0.55 16 45 H 0.10 1.02 7.19 -2.38 -0.02 1.00 16 46 H 0.03 0.40 8.14 -2.38 -0.02 0.38 16 47 H 0.07 0.96 8.12 -2.39 -0.02 0.95 16 48 H 0.05 1.03 6.65 -2.38 -0.02 1.01 16 49 H 0.08 0.53 8.12 -2.39 -0.02 0.51 16 50 H 0.07 0.60 8.12 -2.39 -0.02 0.58 16 51 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -70.06 401.19 1.79 -68.27 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: 0.04 Total: 26.32 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 7.86 Total: 11.70 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -7.75 Total: -114.95 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -0.09 Total: -42.95 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 1.73 Total: 51.62 kcal Total: -70.06 1.79 -68.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411398506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.242 kcal (2) G-P(sol) polarization free energy of solvation -70.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds