Wall clock time and date at job start Wed Apr 1 2020 04:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38281 * 119.92781 * 2 1 4 4 C 1.38107 * 120.07005 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.03256 * 180.02562 * 4 3 2 6 6 C 1.38867 * 119.93085 * 0.02678 * 4 3 2 7 7 N 1.39928 * 120.07363 * 179.97438 * 6 4 3 8 8 C 1.34776 * 120.00179 * 127.87700 * 7 6 4 9 9 O 1.21287 * 119.99642 * 356.36945 * 8 7 6 10 10 C 1.50696 * 120.00027 * 176.37605 * 8 7 6 11 11 N 1.46499 * 109.47363 * 180.02562 * 10 8 7 12 12 C 1.34777 * 120.00314 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99826 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99829 * 180.27099 * 12 11 10 15 15 H 1.08996 * 109.47569 * 39.72722 * 14 12 11 16 16 N 1.46906 * 109.46911 * 159.72722 * 14 12 11 17 17 C 1.53000 * 109.47482 * 279.72476 * 14 12 11 18 18 C 1.52995 * 109.47270 * 175.00138 * 17 14 12 19 19 C 1.50701 * 109.46937 * 179.97438 * 18 17 14 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99968 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99699 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00060 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47002 * 90.00504 * 23 21 19 25 25 H 1.48503 * 109.47017 * 210.00734 * 23 21 19 26 26 H 1.48506 * 109.47036 * 330.00473 * 23 21 19 27 27 C 1.38874 * 119.85788 * 0.25229 * 6 4 3 28 28 C 1.50703 * 120.03525 * 179.75365 * 27 6 4 29 29 C 1.38107 * 119.92898 * 359.46718 * 27 6 4 30 30 H 1.08994 * 109.47031 * 90.00092 * 1 2 3 31 31 H 1.09005 * 109.46804 * 210.00117 * 1 2 3 32 32 H 1.08997 * 109.47023 * 329.99318 * 1 2 3 33 33 H 1.08005 * 119.96291 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47091 * 269.97994 * 5 4 3 35 35 H 1.08998 * 109.47519 * 29.98398 * 5 4 3 36 36 H 1.09000 * 109.47013 * 149.98363 * 5 4 3 37 37 H 0.97005 * 119.99644 * 307.88506 * 7 6 4 38 38 H 1.08995 * 109.47266 * 59.99491 * 10 8 7 39 39 H 1.09001 * 109.47033 * 299.99676 * 10 8 7 40 40 H 0.97002 * 119.99443 * 359.97438 * 11 10 8 41 41 H 1.00900 * 110.99511 * 296.04714 * 16 14 12 42 42 H 1.00901 * 111.00039 * 60.00148 * 16 14 12 43 43 H 1.09008 * 109.47061 * 295.00561 * 17 14 12 44 44 H 1.09001 * 109.47214 * 54.99751 * 17 14 12 45 45 H 1.08998 * 109.47031 * 299.99830 * 18 17 14 46 46 H 1.09003 * 109.47438 * 60.00451 * 18 17 14 47 47 H 0.97008 * 119.99691 * 179.97438 * 22 21 19 48 48 H 1.08989 * 109.47367 * 97.88265 * 28 27 6 49 49 H 1.08999 * 109.46626 * 217.88640 * 28 27 6 50 50 H 1.08999 * 109.46821 * 337.88188 * 28 27 6 51 51 H 1.08002 * 119.96756 * 180.27837 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.3290 2.5084 0.0011 6 6 4.2739 0.0001 0.0005 7 7 5.6732 0.0001 0.0005 8 6 6.3471 -0.7165 0.9218 9 8 5.7424 -1.3083 1.7909 10 6 7.8518 -0.7824 0.8721 11 7 8.3406 -1.6174 1.9721 12 6 9.6639 -1.8209 2.1272 13 8 10.4500 -1.3131 1.3557 14 6 10.1663 -2.6848 3.2551 15 1 9.5079 -3.5452 3.3749 16 7 11.5264 -3.1479 2.9487 17 6 10.1842 -1.8720 4.5512 18 6 10.5746 -2.7812 5.7181 19 6 10.5929 -1.9804 6.9946 20 1 10.3499 -0.9283 6.9756 21 6 10.9188 -2.5912 8.1870 22 7 11.2142 -3.8725 8.2102 23 14 10.9407 -1.5987 9.7694 24 1 9.5971 -1.6431 10.4002 25 1 11.9441 -2.1742 10.7007 26 1 11.2984 -0.1899 9.4651 27 6 3.5781 -1.2017 -0.0054 28 6 4.3292 -2.5082 -0.0110 29 6 2.1970 -1.1984 0.0000 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6551 2.1327 -0.0004 34 1 4.5108 2.8235 -1.0264 35 1 3.7382 3.2669 0.5146 36 1 5.2814 2.3799 0.5155 37 1 6.1581 0.5160 -0.6625 38 1 8.2628 0.2225 0.9679 39 1 8.1654 -1.2142 -0.0783 40 1 7.7118 -2.0239 2.5889 41 1 11.5310 -3.7409 2.1324 42 1 12.1563 -2.3683 2.8330 43 1 10.9093 -1.0628 4.4626 44 1 9.1938 -1.4541 4.7318 45 1 9.8495 -3.5903 5.8066 46 1 11.5651 -3.1990 5.5376 47 1 11.4438 -4.3021 9.0491 48 1 4.3877 -2.8981 1.0051 49 1 3.8074 -3.2245 -0.6457 50 1 5.3358 -2.3468 -0.3967 51 1 1.6553 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424079977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:13 Heat of formation + Delta-G solvation = -66.804359 kcal Electronic energy + Delta-G solvation = -29906.291640 eV Core-core repulsion = 25804.548005 eV Total energy + Delta-G solvation = -4101.743634 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.27796 -39.89275 -38.98145 -35.66744 -35.26777 -34.53252 -33.86649 -32.77708 -32.60388 -30.09615 -28.95387 -28.32847 -27.06592 -26.59827 -25.65562 -23.45261 -21.80477 -21.19706 -20.67354 -20.45549 -19.89505 -18.35759 -17.66911 -16.81205 -16.49143 -16.34285 -16.01983 -15.61076 -15.33613 -14.90346 -14.59782 -14.48588 -14.39308 -14.28696 -13.98754 -13.67488 -13.58234 -13.44003 -13.34185 -13.27841 -13.02577 -12.96656 -12.59312 -12.29213 -12.09012 -11.99072 -11.68340 -11.52543 -11.49255 -11.44091 -10.86896 -10.67756 -10.53864 -10.46506 -10.19375 -10.18272 -9.77771 -9.36189 -9.22911 -8.96877 -8.88789 -8.48107 -8.36086 -8.19987 -5.90856 -3.92703 0.87887 1.03646 2.13669 2.46106 2.70257 3.30588 3.33150 3.37214 3.43290 3.46814 4.17943 4.38174 4.41252 4.48585 4.52765 4.84660 4.88820 4.92102 4.96743 5.01089 5.03644 5.08014 5.16274 5.18454 5.23509 5.24816 5.33668 5.44687 5.46867 5.49497 5.54947 5.56737 5.73610 5.84448 5.95347 5.98084 6.08981 6.20933 6.23726 6.27556 6.47218 6.66568 6.68195 6.90016 7.11369 7.34773 7.55313 7.69659 7.78615 7.80606 7.99218 8.15811 8.22841 8.51483 9.15067 9.70158 11.20051 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.002046 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.496389 B =13680.001975 C =14747.560108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.116 4.116 4 C -0.088 4.088 5 C -0.115 4.115 6 C 0.130 3.870 7 N -0.673 5.673 8 C 0.507 3.493 9 O -0.507 6.507 10 C 0.101 3.899 11 N -0.719 5.719 12 C 0.488 3.512 13 O -0.555 6.555 14 C 0.081 3.919 15 H 0.100 0.900 16 N -0.805 5.805 17 C -0.096 4.096 18 C 0.031 3.969 19 C -0.521 4.521 20 H 0.052 0.948 21 C 0.057 3.943 22 N -0.892 5.892 23 Si 0.889 3.111 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.275 1.275 27 C -0.064 4.064 28 C -0.109 4.109 29 C -0.115 4.115 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.410 0.590 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.415 0.585 41 H 0.334 0.666 42 H 0.348 0.652 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.014 0.986 46 H 0.035 0.965 47 H 0.259 0.741 48 H 0.087 0.913 49 H 0.062 0.938 50 H 0.056 0.944 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.497 8.788 -24.237 32.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.135 4.135 4 C -0.090 4.090 5 C -0.172 4.172 6 C 0.037 3.963 7 N -0.321 5.321 8 C 0.294 3.706 9 O -0.380 6.380 10 C -0.027 4.027 11 N -0.376 5.376 12 C 0.274 3.726 13 O -0.433 6.433 14 C -0.035 4.035 15 H 0.118 0.882 16 N -0.333 5.333 17 C -0.134 4.134 18 C -0.006 4.006 19 C -0.560 4.560 20 H 0.070 0.930 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.200 1.200 27 C -0.066 4.066 28 C -0.166 4.166 29 C -0.133 4.133 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.247 0.753 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.253 0.747 41 H 0.146 0.854 42 H 0.162 0.838 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.032 0.968 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.105 0.895 49 H 0.081 0.919 50 H 0.075 0.925 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.256 8.190 -23.292 31.311 hybrid contribution -0.272 1.222 -0.109 1.257 sum -19.528 9.413 -23.402 31.899 Atomic orbital electron populations 1.20785 0.91016 1.02936 1.02285 1.19903 0.96169 0.92938 0.99426 1.20727 0.92683 0.97749 1.02311 1.19818 0.93953 0.94101 1.01150 1.20756 1.00301 0.93830 1.02330 1.17190 0.82114 0.92697 1.04249 1.43282 1.04762 1.50470 1.33577 1.20751 0.90070 0.78620 0.81120 1.90767 1.69623 1.43191 1.34448 1.20979 0.89628 0.98568 0.93533 1.45956 1.08517 1.51934 1.31212 1.22858 0.81239 0.81530 0.87011 1.90646 1.55443 1.51107 1.46111 1.21843 0.91586 0.97087 0.93014 0.88186 1.59004 1.06181 1.24204 1.43922 1.21676 1.00762 0.98558 0.92449 1.19018 0.98002 0.93825 0.89765 1.21277 1.46346 0.95734 0.92632 0.93000 1.24995 0.95533 0.94893 0.98973 1.69976 1.47078 1.09766 1.26346 0.86647 0.77676 0.80333 0.83624 1.20779 1.21275 1.20007 1.19839 0.93768 0.94439 0.98591 1.20871 0.98984 0.93523 1.03216 1.20764 0.92802 0.97826 1.01937 0.91158 0.91434 0.91494 0.85736 0.91005 0.91071 0.91472 0.75294 0.88375 0.88438 0.74666 0.85431 0.83804 0.92809 0.92706 0.96809 0.94626 0.93126 0.89494 0.91907 0.92530 0.85714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.08 -0.68 5.88 -104.59 -0.62 -1.30 16 3 C -0.12 -0.93 9.35 -39.61 -0.37 -1.30 16 4 C -0.09 -0.75 5.90 -104.44 -0.62 -1.37 16 5 C -0.12 -0.71 9.67 36.01 0.35 -0.37 16 6 C 0.13 1.25 5.84 -83.69 -0.49 0.76 16 7 N -0.67 -5.36 3.91 -9.86 -0.04 -5.40 16 8 C 0.51 5.19 6.05 -10.99 -0.07 5.12 16 9 O -0.51 -6.90 12.74 5.55 0.07 -6.83 16 10 C 0.10 1.01 6.16 -5.20 -0.03 0.97 16 11 N -0.72 -9.27 5.53 -61.48 -0.34 -9.61 16 12 C 0.49 7.52 7.07 -10.99 -0.08 7.45 16 13 O -0.56 -9.65 16.25 5.55 0.09 -9.56 16 14 C 0.08 1.36 3.15 -68.86 -0.22 1.14 16 15 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 16 N -0.81 -13.47 8.44 -5.65 -0.05 -13.52 16 17 C -0.10 -1.97 4.78 -26.73 -0.13 -2.10 16 18 C 0.03 0.80 4.86 -27.89 -0.14 0.67 16 19 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 20 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 23 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C -0.06 -0.65 5.48 -104.43 -0.57 -1.22 16 28 C -0.11 -1.06 8.22 36.01 0.30 -0.76 16 29 C -0.11 -1.03 9.38 -39.61 -0.37 -1.41 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 36 H 0.07 0.44 7.45 -51.93 -0.39 0.05 16 37 H 0.41 2.00 8.68 -40.82 -0.35 1.65 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.42 5.43 7.44 -40.82 -0.30 5.12 16 41 H 0.33 4.80 9.06 -39.29 -0.36 4.44 16 42 H 0.35 5.86 8.58 -39.29 -0.34 5.52 16 43 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.09 0.99 7.09 -51.93 -0.37 0.62 16 49 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 50 H 0.06 0.54 6.16 -51.93 -0.32 0.22 16 51 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 419.27 15.07 6.32 6.32 Total: -1.00 -35.22 419.27 -9.61 -44.82 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -8.28 Total: 10.90 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.10 Total: -7.70 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.31 Total: -55.00 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.16 Total: -16.39 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -35.22 -9.61 -44.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424079977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.981 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds