Wall clock time and date at job start Wed Apr 1 2020 04:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38281 * 119.92781 * 2 1 4 4 C 1.38107 * 120.07005 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.03256 * 180.02562 * 4 3 2 6 6 C 1.38867 * 119.93085 * 0.02678 * 4 3 2 7 7 N 1.39928 * 120.07363 * 179.97438 * 6 4 3 8 8 C 1.34776 * 120.00179 * 127.87700 * 7 6 4 9 9 O 1.21287 * 119.99642 * 356.36945 * 8 7 6 10 10 C 1.50696 * 120.00027 * 176.37605 * 8 7 6 11 11 N 1.46499 * 109.47363 * 180.02562 * 10 8 7 12 12 C 1.34777 * 120.00314 * 179.97438 * 11 10 8 13 13 O 1.21284 * 119.99826 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99829 * 180.27099 * 12 11 10 15 15 H 1.08996 * 109.47569 * 39.72722 * 14 12 11 16 16 N 1.46906 * 109.46911 * 159.72722 * 14 12 11 17 17 C 1.53000 * 109.47482 * 279.72476 * 14 12 11 18 18 C 1.52995 * 109.47270 * 175.00138 * 17 14 12 19 19 C 1.50701 * 109.46937 * 179.97438 * 18 17 14 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99968 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99699 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00060 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47002 * 90.00504 * 23 21 19 25 25 H 1.48503 * 109.47017 * 210.00734 * 23 21 19 26 26 H 1.48506 * 109.47036 * 330.00473 * 23 21 19 27 27 C 1.38874 * 119.85788 * 0.25229 * 6 4 3 28 28 C 1.50703 * 120.03525 * 179.75365 * 27 6 4 29 29 C 1.38107 * 119.92898 * 359.46718 * 27 6 4 30 30 H 1.08994 * 109.47031 * 90.00092 * 1 2 3 31 31 H 1.09005 * 109.46804 * 210.00117 * 1 2 3 32 32 H 1.08997 * 109.47023 * 329.99318 * 1 2 3 33 33 H 1.08005 * 119.96291 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47091 * 269.97994 * 5 4 3 35 35 H 1.08998 * 109.47519 * 29.98398 * 5 4 3 36 36 H 1.09000 * 109.47013 * 149.98363 * 5 4 3 37 37 H 0.97005 * 119.99644 * 307.88506 * 7 6 4 38 38 H 1.08995 * 109.47266 * 59.99491 * 10 8 7 39 39 H 1.09001 * 109.47033 * 299.99676 * 10 8 7 40 40 H 0.97002 * 119.99443 * 359.97438 * 11 10 8 41 41 H 1.00900 * 110.99511 * 296.04714 * 16 14 12 42 42 H 1.00901 * 111.00039 * 60.00148 * 16 14 12 43 43 H 1.09008 * 109.47061 * 295.00561 * 17 14 12 44 44 H 1.09001 * 109.47214 * 54.99751 * 17 14 12 45 45 H 1.08998 * 109.47031 * 299.99830 * 18 17 14 46 46 H 1.09003 * 109.47438 * 60.00451 * 18 17 14 47 47 H 0.97008 * 119.99691 * 179.97438 * 22 21 19 48 48 H 1.08989 * 109.47367 * 97.88265 * 28 27 6 49 49 H 1.08999 * 109.46626 * 217.88640 * 28 27 6 50 50 H 1.08999 * 109.46821 * 337.88188 * 28 27 6 51 51 H 1.08002 * 119.96756 * 180.27837 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0005 5 6 4.3290 2.5084 0.0011 6 6 4.2739 0.0001 0.0005 7 7 5.6732 0.0001 0.0005 8 6 6.3471 -0.7165 0.9218 9 8 5.7424 -1.3083 1.7909 10 6 7.8518 -0.7824 0.8721 11 7 8.3406 -1.6174 1.9721 12 6 9.6639 -1.8209 2.1272 13 8 10.4500 -1.3131 1.3557 14 6 10.1663 -2.6848 3.2551 15 1 9.5079 -3.5452 3.3749 16 7 11.5264 -3.1479 2.9487 17 6 10.1842 -1.8720 4.5512 18 6 10.5746 -2.7812 5.7181 19 6 10.5929 -1.9804 6.9946 20 1 10.3499 -0.9283 6.9756 21 6 10.9188 -2.5912 8.1870 22 7 11.2142 -3.8725 8.2102 23 14 10.9407 -1.5987 9.7694 24 1 9.5971 -1.6431 10.4002 25 1 11.9441 -2.1742 10.7007 26 1 11.2984 -0.1899 9.4651 27 6 3.5781 -1.2017 -0.0054 28 6 4.3292 -2.5082 -0.0110 29 6 2.1970 -1.1984 0.0000 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6551 2.1327 -0.0004 34 1 4.5108 2.8235 -1.0264 35 1 3.7382 3.2669 0.5146 36 1 5.2814 2.3799 0.5155 37 1 6.1581 0.5160 -0.6625 38 1 8.2628 0.2225 0.9679 39 1 8.1654 -1.2142 -0.0783 40 1 7.7118 -2.0239 2.5889 41 1 11.5310 -3.7409 2.1324 42 1 12.1563 -2.3683 2.8330 43 1 10.9093 -1.0628 4.4626 44 1 9.1938 -1.4541 4.7318 45 1 9.8495 -3.5903 5.8066 46 1 11.5651 -3.1990 5.5376 47 1 11.4438 -4.3021 9.0491 48 1 4.3877 -2.8981 1.0051 49 1 3.8074 -3.2245 -0.6457 50 1 5.3358 -2.3468 -0.3967 51 1 1.6553 -2.1327 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424079977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:11 Heat of formation + Delta-G solvation = -91.404549 kcal Electronic energy + Delta-G solvation = -29907.358384 eV Core-core repulsion = 25804.548005 eV Total energy + Delta-G solvation = -4102.810379 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -42.04030 -41.01391 -39.80602 -36.86872 -36.36461 -35.60884 -34.81297 -34.50918 -33.24389 -31.93145 -29.93946 -28.89175 -27.97854 -27.67286 -26.74939 -25.08148 -22.69823 -22.23487 -21.78745 -21.33951 -21.07073 -19.29802 -18.63289 -18.28712 -17.59995 -17.46824 -17.28345 -16.75013 -16.44865 -16.38759 -15.69686 -15.44273 -15.37256 -15.12388 -15.04512 -14.73372 -14.37782 -14.27033 -14.14170 -14.01718 -13.96091 -13.86563 -13.73349 -13.52412 -13.41386 -13.21791 -12.80220 -12.66440 -12.52426 -12.29107 -12.26877 -12.09802 -12.05253 -11.78389 -11.66867 -11.29072 -11.26795 -11.01322 -10.91704 -10.49239 -10.30268 -9.65014 -9.52953 -9.12683 -8.13869 -6.23972 0.22303 0.38770 1.34337 1.40914 1.42481 1.45773 1.53358 1.64815 2.31736 2.44558 2.69666 3.18924 3.43400 3.57485 3.79665 3.80397 3.83644 3.92347 4.08682 4.21972 4.25697 4.31383 4.32117 4.38476 4.45865 4.48671 4.66255 4.68744 4.73964 4.77852 4.77997 4.85575 4.93445 4.96248 5.08526 5.15238 5.17399 5.25495 5.28370 5.39270 5.46871 5.55086 5.57085 5.66062 5.84400 5.98780 6.05336 6.08778 6.24828 6.30474 6.35241 6.54777 6.94467 6.97543 7.03183 7.43772 8.97335 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011910 B = 0.002046 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.496389 B =13680.001975 C =14747.560108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C -0.124 4.124 4 C -0.094 4.094 5 C -0.114 4.114 6 C 0.110 3.890 7 N -0.656 5.656 8 C 0.512 3.488 9 O -0.545 6.545 10 C 0.102 3.898 11 N -0.712 5.712 12 C 0.497 3.503 13 O -0.572 6.572 14 C 0.086 3.914 15 H 0.107 0.893 16 N -0.817 5.817 17 C -0.083 4.083 18 C 0.039 3.961 19 C -0.544 4.544 20 H 0.055 0.945 21 C 0.000 4.000 22 N -0.929 5.929 23 Si 0.960 3.040 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.266 1.266 27 C -0.086 4.086 28 C -0.103 4.103 29 C -0.130 4.130 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.145 0.855 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.426 0.574 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.415 0.585 41 H 0.348 0.652 42 H 0.347 0.653 43 H 0.047 0.953 44 H 0.061 0.939 45 H -0.009 1.009 46 H 0.009 0.991 47 H 0.262 0.738 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.054 0.946 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.668 10.755 -25.147 34.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.096 4.096 5 C -0.170 4.170 6 C 0.017 3.983 7 N -0.304 5.304 8 C 0.300 3.700 9 O -0.421 6.421 10 C -0.025 4.025 11 N -0.367 5.367 12 C 0.282 3.718 13 O -0.452 6.452 14 C -0.030 4.030 15 H 0.124 0.876 16 N -0.346 5.346 17 C -0.121 4.121 18 C 0.001 3.999 19 C -0.582 4.582 20 H 0.073 0.927 21 C -0.198 4.198 22 N -0.569 5.569 23 Si 0.785 3.215 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.190 1.190 27 C -0.088 4.088 28 C -0.160 4.160 29 C -0.148 4.148 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.163 0.837 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.265 0.735 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.253 0.747 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.010 0.990 46 H 0.027 0.973 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.073 0.927 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.452 10.186 -24.254 33.321 hybrid contribution 0.016 0.609 0.119 0.621 sum -20.437 10.795 -24.135 33.417 Atomic orbital electron populations 1.20829 0.89267 1.03535 1.03231 1.20248 0.97574 0.92701 0.98416 1.21060 0.92772 0.98611 1.01808 1.20132 0.94467 0.94631 1.00386 1.20800 0.99842 0.92805 1.03575 1.17386 0.82583 0.93096 1.05247 1.43094 1.04455 1.49727 1.33166 1.20753 0.90054 0.78298 0.80915 1.90764 1.70225 1.44975 1.36147 1.21157 0.89385 0.98825 0.93174 1.45863 1.07600 1.51574 1.31698 1.22264 0.81903 0.81181 0.86427 1.90642 1.56056 1.51801 1.46709 1.21597 0.92140 0.97124 0.92122 0.87560 1.58958 1.06108 1.24541 1.44992 1.21392 1.00680 0.97615 0.92421 1.18832 0.95893 0.93819 0.91309 1.21732 1.46226 0.96192 0.94021 0.92676 1.25923 0.95048 0.96009 1.02812 1.70108 1.47901 1.11490 1.27425 0.85524 0.78009 0.78959 0.78985 1.19860 1.20775 1.19024 1.20036 0.94484 0.94714 0.99546 1.20776 0.99150 0.93967 1.02072 1.20984 0.92690 0.98807 1.02336 0.89942 0.91191 0.90559 0.83713 0.89126 0.90372 0.91878 0.73480 0.87057 0.86480 0.74702 0.83860 0.83900 0.93402 0.91992 0.99043 0.97254 0.92934 0.91678 0.90663 0.92711 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.09 -1.34 5.88 -19.84 -0.12 -1.46 16 3 C -0.12 -1.78 9.35 22.25 0.21 -1.58 16 4 C -0.09 -1.47 5.90 -19.74 -0.12 -1.58 16 5 C -0.11 -1.16 9.67 71.24 0.69 -0.47 16 6 C 0.11 2.01 5.84 38.15 0.22 2.23 16 7 N -0.66 -9.66 3.91 -303.51 -1.19 -10.84 16 8 C 0.51 10.03 6.05 87.66 0.53 10.56 16 9 O -0.54 -14.86 12.74 -3.05 -0.04 -14.90 16 10 C 0.10 1.85 6.16 85.63 0.53 2.38 16 11 N -0.71 -17.58 5.53 -466.80 -2.58 -20.16 16 12 C 0.50 14.82 7.07 87.66 0.62 15.44 16 13 O -0.57 -19.10 16.25 -3.04 -0.05 -19.15 16 14 C 0.09 2.89 3.15 44.17 0.14 3.03 16 15 H 0.11 3.42 8.14 -2.39 -0.02 3.41 16 16 N -0.82 -27.29 8.44 -171.80 -1.45 -28.74 16 17 C -0.08 -3.41 4.78 30.59 0.15 -3.26 16 18 C 0.04 2.05 4.86 29.85 0.15 2.20 16 19 C -0.54 -31.53 9.11 25.60 0.23 -31.30 16 20 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 21 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 22 N -0.93 -57.55 13.29 21.45 0.28 -57.27 16 23 Si 0.96 45.33 29.54 68.60 2.03 47.35 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 27 C -0.09 -1.72 5.48 -19.74 -0.11 -1.83 16 28 C -0.10 -2.03 8.22 71.24 0.59 -1.44 16 29 C -0.13 -2.29 9.38 22.25 0.21 -2.08 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.63 8.08 -2.38 -0.02 0.61 16 32 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 33 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 36 H 0.06 0.70 7.45 -2.39 -0.02 0.68 16 37 H 0.43 3.37 8.68 -92.70 -0.80 2.57 16 38 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.41 10.63 7.44 -92.71 -0.69 9.94 16 41 H 0.35 9.83 9.06 -89.69 -0.81 9.01 16 42 H 0.35 11.67 8.58 -89.69 -0.77 10.90 16 43 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 45 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 46 H 0.01 0.52 7.75 -2.39 -0.02 0.51 16 47 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 48 H 0.06 1.56 7.09 -2.39 -0.02 1.54 16 49 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 50 H 0.05 1.04 6.16 -2.39 -0.01 1.03 16 51 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -76.14 419.27 0.00 -76.15 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -2.10 Total: 36.62 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 5.09 Total: -9.06 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -4.93 Total: -117.01 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.09 Total: -34.05 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -76.14 0.00 -76.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424079977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.258 kcal (2) G-P(sol) polarization free energy of solvation -76.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds