Wall clock time and date at job start Wed Apr 1 2020 04:54:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38275 * 119.93156 * 2 1
4 4 C 1.38113 * 120.07551 * 179.97438 * 3 2 1
5 5 C 1.50696 * 120.03863 * 180.02562 * 4 3 2
6 6 C 1.38867 * 119.92521 * 0.02562 * 4 3 2
7 7 N 1.39928 * 120.06897 * 179.97438 * 6 4 3
8 8 C 1.34777 * 119.99923 * 127.87844 * 7 6 4
9 9 O 1.21290 * 120.00156 * 356.37063 * 8 7 6
10 10 C 1.50699 * 119.99717 * 176.37209 * 8 7 6
11 11 N 1.46505 * 109.47071 * 180.02562 * 10 8 7
12 12 C 1.34778 * 120.00145 * 180.02562 * 11 10 8
13 13 O 1.21275 * 120.00183 * 359.97438 * 12 11 10
14 14 C 1.50704 * 119.99879 * 180.02562 * 12 11 10
15 15 H 1.08996 * 109.46770 * 319.99246 * 14 12 11
16 16 N 1.46904 * 109.46710 * 199.99462 * 14 12 11
17 17 C 1.52998 * 109.47285 * 79.99760 * 14 12 11
18 18 C 1.53004 * 109.46904 * 185.00074 * 17 14 12
19 19 C 1.50696 * 109.46871 * 180.02562 * 18 17 14
20 20 H 1.07997 * 120.00310 * 359.97438 * 19 18 17
21 21 C 1.37882 * 119.99651 * 180.02562 * 19 18 17
22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18
23 23 Si 1.86802 * 119.99674 * 179.97438 * 21 19 18
24 24 H 1.48507 * 109.47222 * 89.99713 * 23 21 19
25 25 H 1.48498 * 109.47092 * 209.99598 * 23 21 19
26 26 H 1.48496 * 109.47337 * 329.99493 * 23 21 19
27 27 C 1.38874 * 119.86204 * 0.25159 * 6 4 3
28 28 C 1.50696 * 120.03560 * 179.74797 * 27 6 4
29 29 C 1.38113 * 119.92648 * 359.47430 * 27 6 4
30 30 H 1.09002 * 109.47213 * 90.00781 * 1 2 3
31 31 H 1.09000 * 109.47072 * 210.00189 * 1 2 3
32 32 H 1.09000 * 109.47598 * 329.99905 * 1 2 3
33 33 H 1.08002 * 119.96112 * 359.97438 * 3 2 1
34 34 H 1.08999 * 109.47492 * 269.97923 * 5 4 3
35 35 H 1.09005 * 109.46967 * 29.97854 * 5 4 3
36 36 H 1.08994 * 109.46997 * 149.97398 * 5 4 3
37 37 H 0.96993 * 120.00283 * 307.87761 * 7 6 4
38 38 H 1.08996 * 109.47321 * 60.00263 * 10 8 7
39 39 H 1.09004 * 109.47248 * 299.99596 * 10 8 7
40 40 H 0.96999 * 119.99917 * 359.97438 * 11 10 8
41 41 H 1.00902 * 110.99230 * 176.04222 * 16 14 12
42 42 H 1.00895 * 111.00327 * 300.00088 * 16 14 12
43 43 H 1.08997 * 109.46660 * 304.99372 * 17 14 12
44 44 H 1.08995 * 109.47308 * 64.99658 * 17 14 12
45 45 H 1.08999 * 109.46720 * 299.99678 * 18 17 14
46 46 H 1.09003 * 109.46892 * 59.99681 * 18 17 14
47 47 H 0.96997 * 120.00238 * 180.02562 * 22 21 19
48 48 H 1.09007 * 109.47190 * 97.89638 * 28 27 6
49 49 H 1.09002 * 109.47574 * 217.89164 * 28 27 6
50 50 H 1.08997 * 109.47685 * 337.89238 * 28 27 6
51 51 H 1.08003 * 119.96613 * 180.27342 * 29 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1969 1.1983 0.0000
4 6 3.5780 1.2018 0.0005
5 6 4.3291 2.5082 0.0011
6 6 4.2738 0.0000 0.0005
7 7 5.6731 0.0000 0.0005
8 6 6.3470 -0.7166 0.9218
9 8 5.7424 -1.3084 1.7909
10 6 7.8517 -0.7826 0.8721
11 7 8.3405 -1.6176 1.9722
12 6 9.6639 -1.8203 2.1278
13 8 10.4500 -1.3118 1.3570
14 6 10.1666 -2.6797 3.2591
15 1 9.5828 -2.4765 4.1568
16 7 11.5806 -2.3744 3.5149
17 6 10.0238 -4.1554 2.8809
18 6 10.4168 -5.0281 4.0747
19 6 10.2767 -6.4815 3.7020
20 1 9.9407 -6.7554 2.7129
21 6 10.5767 -7.4616 4.6243
22 7 10.9854 -7.1281 5.8289
23 14 10.4024 -9.2632 4.1625
24 1 11.6832 -9.7546 3.5937
25 1 10.0627 -10.0538 5.3728
26 1 9.3229 -9.4136 3.1540
27 6 3.5780 -1.2018 -0.0053
28 6 4.3291 -2.5082 -0.0111
29 6 2.1969 -1.1984 -0.0001
30 1 -0.3634 -0.0001 -1.0277
31 1 -0.3633 -0.8900 0.5139
32 1 -0.3634 0.8899 0.5138
33 1 1.6552 2.1326 -0.0004
34 1 4.5110 2.8233 -1.0264
35 1 3.7382 3.2668 0.5146
36 1 5.2813 2.3796 0.5157
37 1 6.1581 0.5157 -0.6625
38 1 8.2628 0.2223 0.9679
39 1 8.1653 -1.2144 -0.0783
40 1 7.7118 -2.0240 2.5890
41 1 11.9237 -2.8910 4.3108
42 1 12.1432 -2.5547 2.6969
43 1 8.9896 -4.3613 2.6052
44 1 10.6763 -4.3789 2.0370
45 1 11.4510 -4.8221 4.3504
46 1 9.7642 -4.8044 4.9187
47 1 11.1968 -7.8176 6.4776
48 1 4.3875 -2.8983 1.0052
49 1 3.8074 -3.2246 -0.6457
50 1 5.3358 -2.3470 -0.3967
51 1 1.6552 -2.1328 -0.0001
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000424079982.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:54:19
Heat of formation + Delta-G solvation = -67.847083 kcal
Electronic energy + Delta-G solvation = -29949.424880 eV
Core-core repulsion = 25847.636029 eV
Total energy + Delta-G solvation = -4101.788850 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.53 seconds
Orbital eigenvalues (eV)
-41.23590 -39.77132 -38.90487 -35.67271 -35.48111 -34.42299 -33.82833 -32.83678
-32.57087 -29.88310 -28.95979 -28.29535 -27.02962 -26.64893 -25.64577 -23.65192
-21.78255 -21.17669 -20.70184 -20.42254 -19.89934 -18.30825 -17.68289 -16.86359
-16.55715 -16.16328 -16.05219 -15.59533 -14.90345 -14.78563 -14.53820 -14.42883
-14.36807 -14.25439 -13.92173 -13.60429 -13.54381 -13.41494 -13.32039 -13.20662
-13.02809 -12.96857 -12.76758 -12.49938 -12.13510 -12.04939 -11.67299 -11.64763
-11.45941 -11.40221 -11.08347 -10.91363 -10.67520 -10.42237 -10.15297 -9.97327
-9.95421 -9.31176 -9.21233 -9.14076 -8.85688 -8.44755 -8.42255 -8.19595
-6.06724 -4.09645 0.90649 1.06565 2.18234 2.49459 2.86829 3.28515
3.33058 3.35167 3.35849 3.38510 4.22739 4.40279 4.41025 4.44080
4.52104 4.90521 4.95010 4.96542 5.03980 5.07325 5.12345 5.17237
5.17891 5.22512 5.25696 5.27830 5.29488 5.37916 5.49851 5.55344
5.59893 5.60375 5.76555 5.77018 6.00948 6.02630 6.13033 6.24355
6.29646 6.30707 6.33545 6.52915 6.71147 6.89105 6.94274 7.41659
7.53268 7.61890 7.67581 7.74251 7.89860 7.91393 8.32667 8.38505
8.96159 9.55031 11.04195
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012352 B = 0.002112 C = 0.001862
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2266.244777 B =13257.081635 C =15037.235561
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.084 4.084
3 C -0.117 4.117
4 C -0.089 4.089
5 C -0.115 4.115
6 C 0.130 3.870
7 N -0.673 5.673
8 C 0.508 3.492
9 O -0.508 6.508
10 C 0.105 3.895
11 N -0.724 5.724
12 C 0.530 3.470
13 O -0.539 6.539
14 C 0.077 3.923
15 H 0.099 0.901
16 N -0.830 5.830
17 C -0.138 4.138
18 C 0.024 3.976
19 C -0.523 4.523
20 H 0.054 0.946
21 C 0.058 3.942
22 N -0.893 5.893
23 Si 0.893 3.107
24 H -0.280 1.280
25 H -0.286 1.286
26 H -0.274 1.274
27 C -0.063 4.063
28 C -0.111 4.111
29 C -0.115 4.115
30 H 0.070 0.930
31 H 0.067 0.933
32 H 0.066 0.934
33 H 0.124 0.876
34 H 0.071 0.929
35 H 0.070 0.930
36 H 0.066 0.934
37 H 0.411 0.589
38 H 0.099 0.901
39 H 0.099 0.901
40 H 0.414 0.586
41 H 0.355 0.645
42 H 0.345 0.655
43 H 0.057 0.943
44 H 0.055 0.945
45 H 0.018 0.982
46 H 0.019 0.981
47 H 0.261 0.739
48 H 0.087 0.913
49 H 0.063 0.937
50 H 0.057 0.943
51 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.369 19.446 -14.435 30.396
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.085 4.085
3 C -0.136 4.136
4 C -0.091 4.091
5 C -0.171 4.171
6 C 0.038 3.962
7 N -0.321 5.321
8 C 0.295 3.705
9 O -0.381 6.381
10 C -0.023 4.023
11 N -0.381 5.381
12 C 0.317 3.683
13 O -0.415 6.415
14 C -0.039 4.039
15 H 0.116 0.884
16 N -0.363 5.363
17 C -0.177 4.177
18 C -0.013 4.013
19 C -0.561 4.561
20 H 0.073 0.927
21 C -0.144 4.144
22 N -0.532 5.532
23 Si 0.721 3.279
24 H -0.206 1.206
25 H -0.212 1.212
26 H -0.199 1.199
27 C -0.065 4.065
28 C -0.167 4.167
29 C -0.133 4.133
30 H 0.088 0.912
31 H 0.086 0.914
32 H 0.085 0.915
33 H 0.142 0.858
34 H 0.090 0.910
35 H 0.089 0.911
36 H 0.085 0.915
37 H 0.247 0.753
38 H 0.117 0.883
39 H 0.117 0.883
40 H 0.252 0.748
41 H 0.171 0.829
42 H 0.158 0.842
43 H 0.076 0.924
44 H 0.074 0.926
45 H 0.036 0.964
46 H 0.038 0.962
47 H 0.071 0.929
48 H 0.106 0.894
49 H 0.082 0.918
50 H 0.076 0.924
51 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -18.357 20.038 -14.040 30.588
hybrid contribution -0.062 -1.982 -0.450 2.033
sum -18.419 18.057 -14.490 29.585
Atomic orbital electron populations
1.20782 0.91047 1.02890 1.02292 1.19897 0.96144 0.92944 0.99487
1.20712 0.92681 0.97703 1.02463 1.19805 0.93935 0.94070 1.01299
1.20747 1.00243 0.93821 1.02337 1.17192 0.82139 0.92673 1.04239
1.43277 1.04739 1.50497 1.33587 1.20763 0.90105 0.78524 0.81132
1.90763 1.69659 1.43073 1.34619 1.20939 0.89482 0.98339 0.93570
1.45752 1.08262 1.52444 1.31662 1.20932 0.80978 0.80125 0.86234
1.90632 1.55331 1.50033 1.45525 1.21449 0.92336 0.94020 0.96052
0.88356 1.58742 1.01360 1.65004 1.11154 1.22388 1.01685 0.91925
1.01750 1.19106 0.96742 0.93686 0.91773 1.21173 1.45134 0.91114
0.98696 0.92726 1.25017 0.95160 0.99213 0.94980 1.69946 1.45338
1.33315 1.04576 0.86581 0.78439 0.84960 0.77955 1.20639 1.21156
1.19898 1.19871 0.93770 0.94513 0.98348 1.20886 0.99063 0.93440
1.03334 1.20781 0.92831 0.97838 1.01871 0.91162 0.91439 0.91537
0.85790 0.91011 0.91148 0.91495 0.75276 0.88345 0.88315 0.74838
0.82928 0.84158 0.92412 0.92648 0.96376 0.96248 0.92892 0.89414
0.91840 0.92425 0.85696
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.65 10.01 36.00 0.36 -0.29 16
2 C -0.08 -0.70 5.88 -104.59 -0.62 -1.32 16
3 C -0.12 -0.94 9.35 -39.61 -0.37 -1.31 16
4 C -0.09 -0.75 5.90 -104.44 -0.62 -1.37 16
5 C -0.11 -0.68 9.67 36.00 0.35 -0.33 16
6 C 0.13 1.27 5.84 -83.69 -0.49 0.78 16
7 N -0.67 -5.49 3.91 -9.86 -0.04 -5.52 16
8 C 0.51 5.31 6.05 -10.99 -0.07 5.25 16
9 O -0.51 -7.01 12.74 5.55 0.07 -6.94 16
10 C 0.10 1.08 6.16 -5.19 -0.03 1.05 16
11 N -0.72 -9.70 5.53 -61.47 -0.34 -10.04 16
12 C 0.53 8.67 7.08 -10.98 -0.08 8.59 16
13 O -0.54 -10.03 16.25 5.56 0.09 -9.94 16
14 C 0.08 1.32 3.21 -68.86 -0.22 1.10 16
15 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16
16 N -0.83 -14.29 8.94 -5.65 -0.05 -14.34 16
17 C -0.14 -2.73 4.78 -26.73 -0.13 -2.86 16
18 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16
19 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16
20 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16
21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16
22 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16
23 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16
24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
27 C -0.06 -0.67 5.48 -104.43 -0.57 -1.24 16
28 C -0.11 -1.18 8.22 36.00 0.30 -0.89 16
29 C -0.11 -1.08 9.38 -39.61 -0.37 -1.45 16
30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16
32 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16
33 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16
34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
35 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16
36 H 0.07 0.41 7.45 -51.93 -0.39 0.02 16
37 H 0.41 2.07 8.68 -40.82 -0.35 1.72 16
38 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16
39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16
40 H 0.41 5.56 7.44 -40.82 -0.30 5.26 16
41 H 0.36 6.14 7.55 -39.29 -0.30 5.85 16
42 H 0.35 5.96 8.58 -39.29 -0.34 5.62 16
43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16
45 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16
46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
48 H 0.09 1.10 7.10 -51.93 -0.37 0.73 16
49 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16
50 H 0.06 0.62 6.16 -51.93 -0.32 0.30 16
51 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16
LS Contribution 417.32 15.07 6.29 6.29
Total: -1.00 -33.90 417.32 -9.54 -43.44
By element:
Atomic # 1 Polarization: 21.36 SS G_CDS: -8.17 Total: 13.18 kcal
Atomic # 6 Polarization: -4.00 SS G_CDS: -3.10 Total: -7.09 kcal
Atomic # 7 Polarization: -55.71 SS G_CDS: 0.31 Total: -55.40 kcal
Atomic # 8 Polarization: -17.04 SS G_CDS: 0.16 Total: -16.88 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal
Total LS contribution 6.29 Total: 6.29 kcal
Total: -33.90 -9.54 -43.44 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424079982.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.407 kcal
(2) G-P(sol) polarization free energy of solvation -33.904 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.312 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.847 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.53 seconds