Wall clock time and date at job start Wed Apr 1 2020 04:54:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.38275 * 119.93156 * 2 1
4 4 C 1.38113 * 120.07551 * 179.97438 * 3 2 1
5 5 C 1.50696 * 120.03863 * 180.02562 * 4 3 2
6 6 C 1.38867 * 119.92521 * 0.02562 * 4 3 2
7 7 N 1.39928 * 120.06897 * 179.97438 * 6 4 3
8 8 C 1.34777 * 119.99923 * 127.87844 * 7 6 4
9 9 O 1.21290 * 120.00156 * 356.37063 * 8 7 6
10 10 C 1.50699 * 119.99717 * 176.37209 * 8 7 6
11 11 N 1.46505 * 109.47071 * 180.02562 * 10 8 7
12 12 C 1.34778 * 120.00145 * 180.02562 * 11 10 8
13 13 O 1.21275 * 120.00183 * 359.97438 * 12 11 10
14 14 C 1.50704 * 119.99879 * 180.02562 * 12 11 10
15 15 H 1.08996 * 109.46770 * 319.99246 * 14 12 11
16 16 N 1.46904 * 109.46710 * 199.99462 * 14 12 11
17 17 C 1.52998 * 109.47285 * 79.99760 * 14 12 11
18 18 C 1.53004 * 109.46904 * 185.00074 * 17 14 12
19 19 C 1.50696 * 109.46871 * 180.02562 * 18 17 14
20 20 H 1.07997 * 120.00310 * 359.97438 * 19 18 17
21 21 C 1.37882 * 119.99651 * 180.02562 * 19 18 17
22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18
23 23 Si 1.86802 * 119.99674 * 179.97438 * 21 19 18
24 24 H 1.48507 * 109.47222 * 89.99713 * 23 21 19
25 25 H 1.48498 * 109.47092 * 209.99598 * 23 21 19
26 26 H 1.48496 * 109.47337 * 329.99493 * 23 21 19
27 27 C 1.38874 * 119.86204 * 0.25159 * 6 4 3
28 28 C 1.50696 * 120.03560 * 179.74797 * 27 6 4
29 29 C 1.38113 * 119.92648 * 359.47430 * 27 6 4
30 30 H 1.09002 * 109.47213 * 90.00781 * 1 2 3
31 31 H 1.09000 * 109.47072 * 210.00189 * 1 2 3
32 32 H 1.09000 * 109.47598 * 329.99905 * 1 2 3
33 33 H 1.08002 * 119.96112 * 359.97438 * 3 2 1
34 34 H 1.08999 * 109.47492 * 269.97923 * 5 4 3
35 35 H 1.09005 * 109.46967 * 29.97854 * 5 4 3
36 36 H 1.08994 * 109.46997 * 149.97398 * 5 4 3
37 37 H 0.96993 * 120.00283 * 307.87761 * 7 6 4
38 38 H 1.08996 * 109.47321 * 60.00263 * 10 8 7
39 39 H 1.09004 * 109.47248 * 299.99596 * 10 8 7
40 40 H 0.96999 * 119.99917 * 359.97438 * 11 10 8
41 41 H 1.00902 * 110.99230 * 176.04222 * 16 14 12
42 42 H 1.00895 * 111.00327 * 300.00088 * 16 14 12
43 43 H 1.08997 * 109.46660 * 304.99372 * 17 14 12
44 44 H 1.08995 * 109.47308 * 64.99658 * 17 14 12
45 45 H 1.08999 * 109.46720 * 299.99678 * 18 17 14
46 46 H 1.09003 * 109.46892 * 59.99681 * 18 17 14
47 47 H 0.96997 * 120.00238 * 180.02562 * 22 21 19
48 48 H 1.09007 * 109.47190 * 97.89638 * 28 27 6
49 49 H 1.09002 * 109.47574 * 217.89164 * 28 27 6
50 50 H 1.08997 * 109.47685 * 337.89238 * 28 27 6
51 51 H 1.08003 * 119.96613 * 180.27342 * 29 27 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1969 1.1983 0.0000
4 6 3.5780 1.2018 0.0005
5 6 4.3291 2.5082 0.0011
6 6 4.2738 0.0000 0.0005
7 7 5.6731 0.0000 0.0005
8 6 6.3470 -0.7166 0.9218
9 8 5.7424 -1.3084 1.7909
10 6 7.8517 -0.7826 0.8721
11 7 8.3405 -1.6176 1.9722
12 6 9.6639 -1.8203 2.1278
13 8 10.4500 -1.3118 1.3570
14 6 10.1666 -2.6797 3.2591
15 1 9.5828 -2.4765 4.1568
16 7 11.5806 -2.3744 3.5149
17 6 10.0238 -4.1554 2.8809
18 6 10.4168 -5.0281 4.0747
19 6 10.2767 -6.4815 3.7020
20 1 9.9407 -6.7554 2.7129
21 6 10.5767 -7.4616 4.6243
22 7 10.9854 -7.1281 5.8289
23 14 10.4024 -9.2632 4.1625
24 1 11.6832 -9.7546 3.5937
25 1 10.0627 -10.0538 5.3728
26 1 9.3229 -9.4136 3.1540
27 6 3.5780 -1.2018 -0.0053
28 6 4.3291 -2.5082 -0.0111
29 6 2.1969 -1.1984 -0.0001
30 1 -0.3634 -0.0001 -1.0277
31 1 -0.3633 -0.8900 0.5139
32 1 -0.3634 0.8899 0.5138
33 1 1.6552 2.1326 -0.0004
34 1 4.5110 2.8233 -1.0264
35 1 3.7382 3.2668 0.5146
36 1 5.2813 2.3796 0.5157
37 1 6.1581 0.5157 -0.6625
38 1 8.2628 0.2223 0.9679
39 1 8.1653 -1.2144 -0.0783
40 1 7.7118 -2.0240 2.5890
41 1 11.9237 -2.8910 4.3108
42 1 12.1432 -2.5547 2.6969
43 1 8.9896 -4.3613 2.6052
44 1 10.6763 -4.3789 2.0370
45 1 11.4510 -4.8221 4.3504
46 1 9.7642 -4.8044 4.9187
47 1 11.1968 -7.8176 6.4776
48 1 4.3875 -2.8983 1.0052
49 1 3.8074 -3.2246 -0.6457
50 1 5.3358 -2.3470 -0.3967
51 1 1.6552 -2.1328 -0.0001
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000424079982.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:54:18
Heat of formation + Delta-G solvation = -91.075279 kcal
Electronic energy + Delta-G solvation = -29950.432130 eV
Core-core repulsion = 25847.636029 eV
Total energy + Delta-G solvation = -4102.796100 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-42.01842 -40.92522 -39.77815 -37.13559 -36.34580 -35.54151 -34.84146 -34.49842
-33.23289 -31.68998 -29.98066 -28.88271 -27.97795 -27.66117 -26.74155 -25.27741
-22.71346 -22.26284 -21.77219 -21.31779 -21.05561 -19.32592 -18.72975 -18.30025
-17.69802 -17.34564 -17.16155 -16.61394 -16.41675 -15.99584 -15.62581 -15.60023
-15.38783 -15.08155 -14.93475 -14.73953 -14.60005 -14.35100 -14.14459 -14.02652
-13.99068 -13.91932 -13.70543 -13.51745 -13.42899 -13.20933 -12.95203 -12.68695
-12.65233 -12.52025 -12.27447 -12.08880 -12.04184 -11.81614 -11.74130 -11.31260
-11.26784 -10.91197 -10.82033 -10.56636 -10.26142 -9.65767 -9.52045 -9.11630
-8.21897 -6.32179 0.23281 0.39604 1.37291 1.38961 1.39287 1.50024
1.55637 1.63860 2.30876 2.39637 2.70523 3.11559 3.45396 3.75053
3.77613 3.80695 3.82362 3.93235 4.11077 4.22732 4.26545 4.29170
4.32473 4.39816 4.46821 4.49944 4.65832 4.67381 4.69120 4.74899
4.80023 4.82962 4.86261 4.97170 5.07812 5.09648 5.16802 5.21324
5.29738 5.40360 5.45929 5.48106 5.56336 5.65074 5.66965 5.80069
6.04913 6.06996 6.20730 6.26816 6.40768 6.48877 6.83093 6.99798
7.12152 7.36649 8.88892
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012352 B = 0.002112 C = 0.001862
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2266.244777 B =13257.081635 C =15037.235561
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.089 4.089
3 C -0.123 4.123
4 C -0.093 4.093
5 C -0.113 4.113
6 C 0.111 3.889
7 N -0.656 5.656
8 C 0.513 3.487
9 O -0.545 6.545
10 C 0.104 3.896
11 N -0.716 5.716
12 C 0.535 3.465
13 O -0.562 6.562
14 C 0.081 3.919
15 H 0.105 0.895
16 N -0.827 5.827
17 C -0.121 4.121
18 C 0.029 3.971
19 C -0.544 4.544
20 H 0.055 0.945
21 C 0.004 3.996
22 N -0.926 5.926
23 Si 0.960 3.040
24 H -0.273 1.273
25 H -0.281 1.281
26 H -0.267 1.267
27 C -0.086 4.086
28 C -0.104 4.104
29 C -0.131 4.131
30 H 0.081 0.919
31 H 0.068 0.932
32 H 0.077 0.923
33 H 0.147 0.853
34 H 0.090 0.910
35 H 0.079 0.921
36 H 0.064 0.936
37 H 0.426 0.574
38 H 0.118 0.882
39 H 0.113 0.887
40 H 0.414 0.586
41 H 0.353 0.647
42 H 0.346 0.654
43 H 0.061 0.939
44 H 0.049 0.951
45 H 0.005 0.995
46 H -0.001 1.001
47 H 0.264 0.736
48 H 0.064 0.936
49 H 0.072 0.928
50 H 0.053 0.947
51 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.557 20.607 -15.926 32.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.089 4.089
3 C -0.141 4.141
4 C -0.095 4.095
5 C -0.170 4.170
6 C 0.018 3.982
7 N -0.304 5.304
8 C 0.300 3.700
9 O -0.422 6.422
10 C -0.023 4.023
11 N -0.371 5.371
12 C 0.322 3.678
13 O -0.440 6.440
14 C -0.035 4.035
15 H 0.123 0.877
16 N -0.359 5.359
17 C -0.161 4.161
18 C -0.008 4.008
19 C -0.582 4.582
20 H 0.073 0.927
21 C -0.195 4.195
22 N -0.566 5.566
23 Si 0.785 3.215
24 H -0.199 1.199
25 H -0.207 1.207
26 H -0.191 1.191
27 C -0.088 4.088
28 C -0.161 4.161
29 C -0.149 4.149
30 H 0.100 0.900
31 H 0.087 0.913
32 H 0.096 0.904
33 H 0.165 0.835
34 H 0.108 0.892
35 H 0.098 0.902
36 H 0.083 0.917
37 H 0.266 0.734
38 H 0.136 0.864
39 H 0.131 0.869
40 H 0.252 0.748
41 H 0.168 0.832
42 H 0.159 0.841
43 H 0.080 0.920
44 H 0.068 0.932
45 H 0.024 0.976
46 H 0.017 0.983
47 H 0.073 0.927
48 H 0.082 0.918
49 H 0.091 0.909
50 H 0.072 0.928
51 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -19.570 21.235 -15.575 32.810
hybrid contribution 0.230 -2.279 0.001 2.290
sum -19.340 18.956 -15.573 31.239
Atomic orbital electron populations
1.20827 0.89271 1.03547 1.03212 1.20238 0.97560 0.92671 0.98441
1.21064 0.92773 0.98562 1.01738 1.20134 0.94434 0.94601 1.00290
1.20801 0.99888 0.92674 1.03602 1.17379 0.82582 0.93047 1.05205
1.43084 1.04439 1.49750 1.33160 1.20743 0.90032 0.78217 0.80961
1.90760 1.70236 1.44833 1.36321 1.21135 0.89360 0.98833 0.92930
1.45670 1.07238 1.52049 1.32169 1.20565 0.81717 0.80003 0.85559
1.90624 1.56058 1.51149 1.46124 1.21369 0.92616 0.92528 0.96951
0.87721 1.58758 1.01376 1.64689 1.11073 1.22133 1.01515 0.93079
0.99371 1.18974 0.95539 0.93427 0.92850 1.21613 1.44955 0.92888
0.98783 0.92721 1.25887 0.94826 1.03852 0.94921 1.70060 1.46219
1.34776 1.05559 0.85526 0.78723 0.79441 0.77841 1.19875 1.20695
1.19117 1.20020 0.94496 0.94648 0.99651 1.20776 0.99164 0.94141
1.02004 1.20976 0.92673 0.98831 1.02428 0.90008 0.91299 0.90391
0.83537 0.89187 0.90228 0.91721 0.73427 0.86445 0.86930 0.74799
0.83190 0.84118 0.92038 0.93176 0.97625 0.98269 0.92732 0.91769
0.90902 0.92789 0.85102
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.09 10.01 71.23 0.71 -0.37 16
2 C -0.09 -1.36 5.88 -19.85 -0.12 -1.48 16
3 C -0.12 -1.74 9.35 22.25 0.21 -1.53 16
4 C -0.09 -1.41 5.90 -19.74 -0.12 -1.53 16
5 C -0.11 -1.07 9.67 71.23 0.69 -0.38 16
6 C 0.11 2.07 5.84 38.15 0.22 2.29 16
7 N -0.66 -9.93 3.91 -303.50 -1.19 -11.12 16
8 C 0.51 10.34 6.05 87.66 0.53 10.87 16
9 O -0.54 -15.17 12.74 -3.06 -0.04 -15.21 16
10 C 0.10 1.99 6.16 85.63 0.53 2.52 16
11 N -0.72 -18.54 5.53 -466.78 -2.58 -21.12 16
12 C 0.53 17.01 7.08 87.66 0.62 17.63 16
13 O -0.56 -20.22 16.25 -3.01 -0.05 -20.27 16
14 C 0.08 2.76 3.21 44.17 0.14 2.90 16
15 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16
16 N -0.83 -28.37 8.94 -171.79 -1.54 -29.91 16
17 C -0.12 -4.82 4.78 30.60 0.15 -4.67 16
18 C 0.03 1.46 4.74 29.85 0.14 1.61 16
19 C -0.54 -30.40 9.11 25.60 0.23 -30.17 16
20 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16
21 C 0.00 0.20 5.46 84.66 0.46 0.66 16
22 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16
23 Si 0.96 44.05 29.54 68.60 2.03 46.08 16
24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16
25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16
26 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16
27 C -0.09 -1.83 5.48 -19.74 -0.11 -1.93 16
28 C -0.10 -2.29 8.22 71.23 0.59 -1.71 16
29 C -0.13 -2.42 9.38 22.25 0.21 -2.21 16
30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16
31 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16
32 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16
33 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16
34 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16
35 H 0.08 0.62 8.09 -2.38 -0.02 0.60 16
36 H 0.06 0.65 7.45 -2.39 -0.02 0.63 16
37 H 0.43 3.51 8.68 -92.71 -0.80 2.71 16
38 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16
39 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16
40 H 0.41 10.98 7.44 -92.71 -0.69 10.29 16
41 H 0.35 12.36 7.55 -89.69 -0.68 11.68 16
42 H 0.35 11.86 8.58 -89.70 -0.77 11.09 16
43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16
44 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16
45 H 0.01 0.29 6.87 -2.39 -0.02 0.27 16
46 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16
47 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16
48 H 0.06 1.70 7.10 -2.38 -0.02 1.68 16
49 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16
50 H 0.05 1.17 6.16 -2.39 -0.01 1.15 16
51 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16
Total: -1.00 -72.76 417.32 0.05 -72.71
By element:
Atomic # 1 Polarization: 43.06 SS G_CDS: -1.96 Total: 41.11 kcal
Atomic # 6 Polarization: -12.59 SS G_CDS: 5.09 Total: -7.50 kcal
Atomic # 7 Polarization: -111.90 SS G_CDS: -5.02 Total: -116.92 kcal
Atomic # 8 Polarization: -35.39 SS G_CDS: -0.09 Total: -35.47 kcal
Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal
Total: -72.76 0.05 -72.71 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424079982.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.369 kcal
(2) G-P(sol) polarization free energy of solvation -72.756 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.125 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.706 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds