Wall clock time and date at job start Wed Apr 1 2020 05:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38085 * 119.99869 * 2 1 4 4 C 1.38868 * 119.99687 * 180.02562 * 3 2 1 5 5 N 1.39882 * 120.00573 * 180.02562 * 4 3 2 6 6 C 1.47015 * 111.00104 * 303.63531 * 5 4 3 7 7 C 1.53100 * 109.25629 * 177.60587 * 6 5 4 8 8 O 1.43020 * 109.25673 * 56.85385 * 7 6 5 9 9 C 1.43019 * 113.73487 * 301.32263 * 8 7 6 10 10 C 1.47019 * 111.00076 * 179.97438 * 5 4 3 11 11 C 1.38911 * 119.98754 * 0.02562 * 4 3 2 12 12 C 1.38043 * 120.00133 * 359.76393 * 11 4 3 13 13 C 1.38828 * 119.99518 * 180.02562 * 2 1 3 14 14 N 1.40153 * 120.00036 * 359.97004 * 13 2 1 15 15 C 1.34773 * 120.00140 * 155.43275 * 14 13 2 16 16 O 1.21302 * 119.99981 * 354.48034 * 15 14 13 17 17 C 1.50698 * 120.00332 * 174.48576 * 15 14 13 18 18 H 1.08998 * 109.46845 * 39.99345 * 17 15 14 19 19 N 1.46891 * 109.47709 * 160.00019 * 17 15 14 20 20 C 1.53004 * 109.46808 * 280.00064 * 17 15 14 21 21 C 1.52999 * 109.46936 * 174.99449 * 20 17 15 22 22 C 1.50702 * 109.46797 * 179.97438 * 21 20 17 23 23 H 1.07996 * 120.00330 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99966 * 179.97438 * 22 21 20 25 25 N 1.31514 * 119.99729 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00283 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47373 * 89.99774 * 26 24 22 28 28 H 1.48499 * 109.47362 * 210.00595 * 26 24 22 29 29 H 1.48506 * 109.47143 * 329.99970 * 26 24 22 30 30 H 1.08997 * 109.46848 * 269.97757 * 1 2 3 31 31 H 1.08995 * 109.47005 * 29.97736 * 1 2 3 32 32 H 1.09002 * 109.46900 * 149.97784 * 1 2 3 33 33 H 1.08002 * 119.99880 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.50320 * 297.53638 * 6 5 4 35 35 H 1.08994 * 109.50715 * 57.66830 * 6 5 4 36 36 H 1.08994 * 109.50961 * 296.91160 * 7 6 5 37 37 H 1.09004 * 109.53814 * 176.80024 * 7 6 5 38 38 H 1.09003 * 109.50678 * 298.74146 * 9 8 7 39 39 H 1.08995 * 109.54006 * 178.63215 * 9 8 7 40 40 H 1.09003 * 109.50157 * 302.32432 * 10 5 4 41 41 H 1.08998 * 109.50673 * 62.41574 * 10 5 4 42 42 H 1.08001 * 120.00127 * 180.02562 * 11 4 3 43 43 H 1.07991 * 120.00590 * 180.25354 * 12 11 4 44 44 H 0.97000 * 119.99611 * 335.43994 * 14 13 2 45 45 H 1.00899 * 111.00162 * 296.04425 * 19 17 15 46 46 H 1.00901 * 110.99894 * 59.99500 * 19 17 15 47 47 H 1.08997 * 109.47334 * 294.99639 * 20 17 15 48 48 H 1.08999 * 109.47077 * 54.99694 * 20 17 15 49 49 H 1.08996 * 109.47568 * 299.99782 * 21 20 17 50 50 H 1.08999 * 109.47037 * 60.00220 * 21 20 17 51 51 H 0.97007 * 119.99824 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1959 0.0000 4 6 3.5861 1.1958 -0.0005 5 7 4.2856 2.4071 0.0000 6 6 3.8904 3.2444 -1.1420 7 6 4.6337 4.5808 -1.0695 8 8 6.0425 4.3359 -1.0397 9 6 6.4625 3.5241 0.0603 10 6 5.7377 2.1770 -0.0001 11 6 4.2803 -0.0074 -0.0016 12 6 3.5899 -1.2027 0.0028 13 6 2.2010 -1.2023 -0.0005 14 7 1.5002 -2.4160 -0.0004 15 6 2.0822 -3.5304 -0.4862 16 8 3.1722 -3.4644 -1.0143 17 6 1.3789 -4.8583 -0.3733 18 1 0.3151 -4.7238 -0.5690 19 7 1.9424 -5.7959 -1.3537 20 6 1.5710 -5.4189 1.0373 21 6 0.7551 -6.7040 1.1909 22 6 0.9448 -7.2565 2.5801 23 1 1.5831 -6.7422 3.2832 24 6 0.3027 -8.4180 2.9538 25 7 -0.4750 -9.0440 2.0977 26 14 0.5373 -9.1024 4.6759 27 1 -0.4956 -8.5346 5.5792 28 1 0.4071 -10.5813 4.6428 29 1 1.8870 -8.7354 5.1748 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6573 2.1312 -0.0004 34 1 4.1457 2.7358 -2.0717 35 1 2.8158 3.4232 -1.1075 36 1 4.3376 5.1135 -0.1659 37 1 4.3875 5.1828 -1.9442 38 1 6.2195 4.0261 0.9968 39 1 7.5387 3.3613 0.0032 40 1 6.0111 1.5770 0.8679 41 1 6.0227 1.6505 -0.9110 42 1 5.3603 -0.0077 -0.0016 43 1 4.1295 -2.1381 0.0061 44 1 0.5962 -2.4540 0.3491 45 1 1.7711 -5.4797 -2.2964 46 1 2.9285 -5.9374 -1.1934 47 1 2.6263 -5.6368 1.2011 48 1 1.2337 -4.6848 1.7690 49 1 -0.3003 -6.4862 1.0272 50 1 1.0923 -7.4381 0.4591 51 1 -0.9265 -9.8614 2.3604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424137002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:26 Heat of formation + Delta-G solvation = -49.693180 kcal Electronic energy + Delta-G solvation = -30221.188467 eV Core-core repulsion = 26120.186829 eV Total energy + Delta-G solvation = -4101.001638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.08603 -40.25456 -38.68943 -36.51730 -35.30684 -34.13631 -32.90080 -32.76885 -31.68299 -30.18140 -29.83541 -27.40547 -27.15785 -25.93629 -24.63637 -23.80517 -22.41826 -21.84474 -20.74860 -20.25402 -19.82724 -17.95926 -17.51330 -17.22659 -16.57399 -16.22935 -15.97143 -15.65059 -15.47856 -15.36760 -15.13843 -14.93282 -14.63030 -14.41836 -14.24210 -13.94774 -13.70822 -13.57266 -13.44347 -13.01926 -12.67917 -12.37367 -12.26305 -12.15382 -12.09810 -12.03652 -11.85929 -11.62121 -11.18219 -11.11969 -10.92298 -10.87817 -10.68463 -10.60277 -10.19688 -10.11023 -9.85929 -9.43058 -9.26934 -9.03902 -8.89593 -8.43269 -8.26975 -7.65639 -5.96934 -3.99237 1.09000 1.24993 2.57485 3.05865 3.21585 3.32673 3.39376 3.40515 3.42743 3.67433 4.35407 4.43332 4.47297 4.51461 4.64648 4.66982 4.68766 4.78097 4.81873 4.93653 4.94381 5.06611 5.12491 5.17711 5.24366 5.29914 5.35779 5.37736 5.38150 5.40884 5.45592 5.49841 5.67065 5.71305 5.82636 5.94590 5.99060 6.26359 6.33750 6.38587 6.57206 6.60306 6.62945 6.67070 7.01479 7.05739 7.25250 7.44232 7.69754 7.72442 7.91390 8.08202 8.10336 8.44400 9.08472 9.64119 11.13848 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018993 B = 0.001890 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.889682 B =14810.707544 C =15024.357222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.117 4.117 4 C 0.084 3.916 5 N -0.485 5.485 6 C 0.019 3.981 7 C 0.063 3.937 8 O -0.385 6.385 9 C 0.063 3.937 10 C 0.012 3.988 11 C -0.151 4.151 12 C -0.101 4.101 13 C 0.133 3.867 14 N -0.668 5.668 15 C 0.482 3.518 16 O -0.533 6.533 17 C 0.081 3.919 18 H 0.100 0.900 19 N -0.805 5.805 20 C -0.096 4.096 21 C 0.032 3.968 22 C -0.523 4.523 23 H 0.052 0.948 24 C 0.058 3.942 25 N -0.892 5.892 26 Si 0.889 3.111 27 H -0.281 1.281 28 H -0.287 1.287 29 H -0.275 1.275 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.127 0.873 43 H 0.147 0.853 44 H 0.413 0.587 45 H 0.335 0.665 46 H 0.349 0.651 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.013 0.987 50 H 0.036 0.964 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.821 27.655 -7.240 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.100 4.100 3 C -0.137 4.137 4 C -0.013 4.013 5 N -0.202 5.202 6 C -0.107 4.107 7 C -0.015 4.015 8 O -0.303 6.303 9 C -0.014 4.014 10 C -0.115 4.115 11 C -0.172 4.172 12 C -0.122 4.122 13 C 0.038 3.962 14 N -0.312 5.312 15 C 0.269 3.731 16 O -0.410 6.410 17 C -0.035 4.035 18 H 0.118 0.882 19 N -0.333 5.333 20 C -0.134 4.134 21 C -0.006 4.006 22 C -0.561 4.561 23 H 0.070 0.930 24 C -0.144 4.144 25 N -0.531 5.531 26 Si 0.717 3.283 27 H -0.208 1.208 28 H -0.212 1.212 29 H -0.200 1.200 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.144 0.856 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.119 0.881 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.145 0.855 43 H 0.165 0.835 44 H 0.249 0.751 45 H 0.147 0.853 46 H 0.163 0.837 47 H 0.073 0.927 48 H 0.073 0.927 49 H 0.032 0.968 50 H 0.054 0.946 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.007 27.284 -7.049 29.038 hybrid contribution 0.214 -0.132 0.494 0.554 sum 7.222 27.153 -6.555 28.851 Atomic orbital electron populations 1.20742 0.90734 1.03032 1.02698 1.19476 0.96015 0.91306 1.03158 1.20338 0.91890 0.97164 1.04325 1.18808 0.92820 0.88460 1.01232 1.59465 1.05551 1.14377 1.40786 1.22941 1.01488 0.94585 0.91655 1.22713 0.80787 0.95160 1.02796 1.88006 1.22975 1.70749 1.48596 1.22716 0.99129 0.89496 0.90067 1.22977 0.86920 0.98778 1.02847 1.21165 0.99959 0.91312 1.04737 1.21292 0.92565 0.99302 0.99050 1.17701 0.91503 0.85044 1.01993 1.43875 1.18852 1.07036 1.61450 1.23080 0.86920 0.87193 0.75892 1.90612 1.21159 1.86412 1.42779 1.21885 0.99019 0.84955 0.97684 0.88187 1.58986 1.22073 1.46926 1.05302 1.21691 1.01947 1.00571 0.89231 1.19017 0.94150 0.90509 0.96877 1.21262 1.28116 1.08457 0.98314 0.92973 1.24993 0.95363 0.96902 0.97093 1.69974 1.30451 1.18116 1.34562 0.86641 0.78453 0.78186 0.84971 1.20764 1.21243 1.19981 0.90711 0.91106 0.91558 0.85628 0.92988 0.88985 0.92038 0.88074 0.92041 0.87994 0.88744 0.92639 0.85540 0.83522 0.75062 0.85308 0.83696 0.92695 0.92715 0.96822 0.94594 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.44 36.01 0.34 -0.59 16 2 C -0.10 -1.04 5.89 -104.46 -0.62 -1.66 16 3 C -0.12 -1.20 8.85 -39.40 -0.35 -1.55 16 4 C 0.08 0.91 5.64 -83.70 -0.47 0.44 16 5 N -0.49 -4.48 4.78 -170.75 -0.82 -5.29 16 6 C 0.02 0.15 5.41 -3.71 -0.02 0.13 16 7 C 0.06 0.42 7.01 37.21 0.26 0.68 16 8 O -0.38 -3.36 10.83 -35.23 -0.38 -3.74 16 9 C 0.06 0.44 7.01 37.21 0.26 0.70 16 10 C 0.01 0.10 4.33 -3.71 -0.02 0.08 16 11 C -0.15 -1.79 8.81 -39.40 -0.35 -2.14 16 12 C -0.10 -1.41 8.71 -39.41 -0.34 -1.75 16 13 C 0.13 1.73 6.42 -83.59 -0.54 1.20 16 14 N -0.67 -8.48 4.98 -9.81 -0.05 -8.53 16 15 C 0.48 7.24 6.87 -10.99 -0.08 7.16 16 16 O -0.53 -9.16 13.41 5.54 0.07 -9.09 16 17 C 0.08 1.28 3.15 -68.87 -0.22 1.06 16 18 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 19 N -0.81 -12.92 8.44 -5.66 -0.05 -12.96 16 20 C -0.10 -1.87 4.78 -26.73 -0.13 -2.00 16 21 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 22 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 23 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 24 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 25 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 26 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.07 0.52 6.97 -51.93 -0.36 0.16 16 33 H 0.13 1.05 7.19 -52.49 -0.38 0.67 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.59 6.86 -51.93 -0.36 0.24 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.71 7.23 -51.93 -0.38 0.34 16 41 H 0.06 0.48 7.53 -51.93 -0.39 0.09 16 42 H 0.13 1.31 5.81 -52.49 -0.30 1.00 16 43 H 0.15 2.30 5.78 -52.49 -0.30 1.99 16 44 H 0.41 4.32 7.39 -40.82 -0.30 4.01 16 45 H 0.34 4.65 9.06 -39.29 -0.36 4.29 16 46 H 0.35 5.66 8.58 -39.29 -0.34 5.32 16 47 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 51 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -33.16 404.05 -10.28 -43.43 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -8.06 Total: 10.30 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.81 Total: -10.92 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.18 Total: -52.63 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.31 Total: -12.83 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.16 -10.28 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424137002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.258 kcal (2) G-P(sol) polarization free energy of solvation -33.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds