Wall clock time and date at job start Wed Apr 1 2020 05:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38085 * 119.99869 * 2 1 4 4 C 1.38868 * 119.99687 * 180.02562 * 3 2 1 5 5 N 1.39882 * 120.00573 * 180.02562 * 4 3 2 6 6 C 1.47015 * 111.00104 * 303.63531 * 5 4 3 7 7 C 1.53100 * 109.25629 * 177.60587 * 6 5 4 8 8 O 1.43020 * 109.25673 * 56.85385 * 7 6 5 9 9 C 1.43019 * 113.73487 * 301.32263 * 8 7 6 10 10 C 1.47019 * 111.00076 * 179.97438 * 5 4 3 11 11 C 1.38911 * 119.98754 * 0.02562 * 4 3 2 12 12 C 1.38043 * 120.00133 * 359.76393 * 11 4 3 13 13 C 1.38828 * 119.99518 * 180.02562 * 2 1 3 14 14 N 1.40153 * 120.00036 * 359.97004 * 13 2 1 15 15 C 1.34773 * 120.00140 * 155.43275 * 14 13 2 16 16 O 1.21302 * 119.99981 * 354.48034 * 15 14 13 17 17 C 1.50698 * 120.00332 * 174.48576 * 15 14 13 18 18 H 1.08998 * 109.46845 * 39.99345 * 17 15 14 19 19 N 1.46891 * 109.47709 * 160.00019 * 17 15 14 20 20 C 1.53004 * 109.46808 * 280.00064 * 17 15 14 21 21 C 1.52999 * 109.46936 * 174.99449 * 20 17 15 22 22 C 1.50702 * 109.46797 * 179.97438 * 21 20 17 23 23 H 1.07996 * 120.00330 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99966 * 179.97438 * 22 21 20 25 25 N 1.31514 * 119.99729 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00283 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47373 * 89.99774 * 26 24 22 28 28 H 1.48499 * 109.47362 * 210.00595 * 26 24 22 29 29 H 1.48506 * 109.47143 * 329.99970 * 26 24 22 30 30 H 1.08997 * 109.46848 * 269.97757 * 1 2 3 31 31 H 1.08995 * 109.47005 * 29.97736 * 1 2 3 32 32 H 1.09002 * 109.46900 * 149.97784 * 1 2 3 33 33 H 1.08002 * 119.99880 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.50320 * 297.53638 * 6 5 4 35 35 H 1.08994 * 109.50715 * 57.66830 * 6 5 4 36 36 H 1.08994 * 109.50961 * 296.91160 * 7 6 5 37 37 H 1.09004 * 109.53814 * 176.80024 * 7 6 5 38 38 H 1.09003 * 109.50678 * 298.74146 * 9 8 7 39 39 H 1.08995 * 109.54006 * 178.63215 * 9 8 7 40 40 H 1.09003 * 109.50157 * 302.32432 * 10 5 4 41 41 H 1.08998 * 109.50673 * 62.41574 * 10 5 4 42 42 H 1.08001 * 120.00127 * 180.02562 * 11 4 3 43 43 H 1.07991 * 120.00590 * 180.25354 * 12 11 4 44 44 H 0.97000 * 119.99611 * 335.43994 * 14 13 2 45 45 H 1.00899 * 111.00162 * 296.04425 * 19 17 15 46 46 H 1.00901 * 110.99894 * 59.99500 * 19 17 15 47 47 H 1.08997 * 109.47334 * 294.99639 * 20 17 15 48 48 H 1.08999 * 109.47077 * 54.99694 * 20 17 15 49 49 H 1.08996 * 109.47568 * 299.99782 * 21 20 17 50 50 H 1.08999 * 109.47037 * 60.00220 * 21 20 17 51 51 H 0.97007 * 119.99824 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1959 0.0000 4 6 3.5861 1.1958 -0.0005 5 7 4.2856 2.4071 0.0000 6 6 3.8904 3.2444 -1.1420 7 6 4.6337 4.5808 -1.0695 8 8 6.0425 4.3359 -1.0397 9 6 6.4625 3.5241 0.0603 10 6 5.7377 2.1770 -0.0001 11 6 4.2803 -0.0074 -0.0016 12 6 3.5899 -1.2027 0.0028 13 6 2.2010 -1.2023 -0.0005 14 7 1.5002 -2.4160 -0.0004 15 6 2.0822 -3.5304 -0.4862 16 8 3.1722 -3.4644 -1.0143 17 6 1.3789 -4.8583 -0.3733 18 1 0.3151 -4.7238 -0.5690 19 7 1.9424 -5.7959 -1.3537 20 6 1.5710 -5.4189 1.0373 21 6 0.7551 -6.7040 1.1909 22 6 0.9448 -7.2565 2.5801 23 1 1.5831 -6.7422 3.2832 24 6 0.3027 -8.4180 2.9538 25 7 -0.4750 -9.0440 2.0977 26 14 0.5373 -9.1024 4.6759 27 1 -0.4956 -8.5346 5.5792 28 1 0.4071 -10.5813 4.6428 29 1 1.8870 -8.7354 5.1748 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6573 2.1312 -0.0004 34 1 4.1457 2.7358 -2.0717 35 1 2.8158 3.4232 -1.1075 36 1 4.3376 5.1135 -0.1659 37 1 4.3875 5.1828 -1.9442 38 1 6.2195 4.0261 0.9968 39 1 7.5387 3.3613 0.0032 40 1 6.0111 1.5770 0.8679 41 1 6.0227 1.6505 -0.9110 42 1 5.3603 -0.0077 -0.0016 43 1 4.1295 -2.1381 0.0061 44 1 0.5962 -2.4540 0.3491 45 1 1.7711 -5.4797 -2.2964 46 1 2.9285 -5.9374 -1.1934 47 1 2.6263 -5.6368 1.2011 48 1 1.2337 -4.6848 1.7690 49 1 -0.3003 -6.4862 1.0272 50 1 1.0923 -7.4381 0.4591 51 1 -0.9265 -9.8614 2.3604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424137002.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:25 Heat of formation + Delta-G solvation = -73.427550 kcal Electronic energy + Delta-G solvation = -30222.217666 eV Core-core repulsion = 26120.186829 eV Total energy + Delta-G solvation = -4102.030838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.02371 -41.14202 -39.55305 -37.37838 -36.77746 -35.10891 -34.82655 -33.61800 -32.28120 -31.95037 -30.70376 -28.45342 -28.06310 -27.21504 -25.50456 -25.13182 -23.47039 -22.60797 -22.25728 -21.10995 -21.03774 -18.98158 -18.55362 -18.20898 -18.12465 -17.26754 -17.03716 -16.59128 -16.46782 -16.27265 -16.17320 -15.89287 -15.80852 -15.66065 -15.21587 -14.99206 -14.75368 -14.53709 -14.31963 -14.23697 -13.87016 -13.76554 -13.45852 -13.30147 -13.01566 -12.81111 -12.80531 -12.72947 -12.52437 -12.43871 -12.29553 -11.98293 -11.82832 -11.73178 -11.68726 -11.57846 -11.25129 -10.98927 -10.78983 -10.49213 -10.12269 -9.75510 -9.66499 -8.54753 -8.14257 -6.24150 0.17102 0.35020 1.40786 1.42434 1.43498 1.53296 1.99713 2.43983 2.48131 2.79285 2.89439 3.18835 3.46184 3.67539 3.76286 3.80364 3.85718 3.89843 4.05339 4.05909 4.14508 4.20174 4.22658 4.26423 4.36226 4.43889 4.49060 4.61005 4.64228 4.73006 4.74776 4.79142 4.80142 4.90044 4.90869 4.93936 5.01659 5.15149 5.22540 5.23822 5.39277 5.44738 5.56901 5.72399 5.83858 5.87555 5.98142 6.05076 6.10499 6.20696 6.29900 6.34519 6.48714 6.94248 6.98423 7.43788 8.96686 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018993 B = 0.001890 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.889682 B =14810.707544 C =15024.357222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.089 4.089 3 C -0.117 4.117 4 C 0.087 3.913 5 N -0.487 5.487 6 C 0.019 3.981 7 C 0.062 3.938 8 O -0.404 6.404 9 C 0.065 3.935 10 C 0.011 3.989 11 C -0.162 4.162 12 C -0.122 4.122 13 C 0.108 3.892 14 N -0.654 5.654 15 C 0.487 3.513 16 O -0.557 6.557 17 C 0.090 3.910 18 H 0.116 0.884 19 N -0.817 5.817 20 C -0.083 4.083 21 C 0.040 3.960 22 C -0.543 4.543 23 H 0.054 0.946 24 C 0.002 3.998 25 N -0.928 5.928 26 Si 0.958 3.042 27 H -0.271 1.271 28 H -0.284 1.284 29 H -0.268 1.268 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.151 0.849 34 H 0.040 0.960 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.120 0.880 38 H 0.067 0.933 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.046 0.954 42 H 0.133 0.867 43 H 0.122 0.878 44 H 0.424 0.576 45 H 0.348 0.652 46 H 0.346 0.654 47 H 0.043 0.957 48 H 0.067 0.933 49 H -0.003 1.003 50 H 0.007 0.993 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.224 30.107 -6.477 31.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.011 4.011 5 N -0.204 5.204 6 C -0.106 4.106 7 C -0.015 4.015 8 O -0.323 6.323 9 C -0.012 4.012 10 C -0.117 4.117 11 C -0.183 4.183 12 C -0.142 4.142 13 C 0.013 3.987 14 N -0.300 5.300 15 C 0.274 3.726 16 O -0.436 6.436 17 C -0.026 4.026 18 H 0.134 0.866 19 N -0.345 5.345 20 C -0.121 4.121 21 C 0.002 3.998 22 C -0.582 4.582 23 H 0.072 0.928 24 C -0.196 4.196 25 N -0.568 5.568 26 Si 0.783 3.217 27 H -0.196 1.196 28 H -0.209 1.209 29 H -0.193 1.193 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.169 0.831 34 H 0.058 0.942 35 H 0.126 0.874 36 H 0.087 0.913 37 H 0.138 0.862 38 H 0.085 0.915 39 H 0.135 0.865 40 H 0.115 0.885 41 H 0.064 0.936 42 H 0.151 0.849 43 H 0.139 0.861 44 H 0.262 0.738 45 H 0.161 0.839 46 H 0.160 0.840 47 H 0.061 0.939 48 H 0.085 0.915 49 H 0.015 0.985 50 H 0.026 0.974 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.397 29.781 -6.282 31.101 hybrid contribution 0.421 -0.797 0.235 0.932 sum 6.818 28.983 -6.047 30.382 Atomic orbital electron populations 1.20835 0.88541 1.04119 1.03735 1.19785 0.97565 0.90477 1.01401 1.20658 0.91723 0.98003 1.03398 1.19005 0.93410 0.88678 1.00010 1.59516 1.05981 1.13551 1.41322 1.23028 1.02633 0.94596 0.90392 1.22861 0.79766 0.94751 1.04098 1.87984 1.24132 1.70932 1.49239 1.22801 0.99887 0.88590 0.89947 1.23022 0.86555 0.99575 1.02505 1.21251 1.00462 0.91306 1.05252 1.21191 0.93291 0.98981 1.00786 1.17862 0.91379 0.85675 1.03829 1.43668 1.19166 1.06541 1.60578 1.22692 0.86390 0.87410 0.76084 1.90615 1.22082 1.86760 1.44095 1.21653 1.00047 0.85368 0.95528 0.86629 1.58971 1.21932 1.47415 1.06229 1.21407 1.00071 0.98506 0.92111 1.18825 0.93796 0.92230 0.94904 1.21717 1.27947 1.08856 0.99637 0.92759 1.25883 0.95053 0.97343 1.01324 1.70099 1.31413 1.18612 1.36677 0.85553 0.78775 0.77375 0.79950 1.19642 1.20944 1.19272 0.89561 0.89163 0.91397 0.83108 0.94202 0.87402 0.91295 0.86203 0.91483 0.86488 0.88517 0.93567 0.84896 0.86058 0.73759 0.83879 0.84009 0.93865 0.91487 0.98479 0.97440 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 9.44 71.24 0.67 -0.86 16 2 C -0.09 -1.76 5.89 -19.76 -0.12 -1.88 16 3 C -0.12 -2.14 8.85 22.38 0.20 -1.94 16 4 C 0.09 1.77 5.64 38.17 0.22 1.99 16 5 N -0.49 -8.22 4.78 -694.13 -3.31 -11.53 16 6 C 0.02 0.25 5.41 86.31 0.47 0.72 16 7 C 0.06 0.69 7.01 72.02 0.50 1.20 16 8 O -0.40 -6.40 10.83 -148.98 -1.61 -8.01 16 9 C 0.06 0.82 7.01 72.01 0.50 1.32 16 10 C 0.01 0.16 4.33 86.31 0.37 0.54 16 11 C -0.16 -3.86 8.81 22.38 0.20 -3.67 16 12 C -0.12 -3.45 8.71 22.38 0.19 -3.26 16 13 C 0.11 2.74 6.42 38.11 0.24 2.99 16 14 N -0.65 -16.21 4.98 -303.34 -1.51 -17.72 16 15 C 0.49 14.66 6.87 87.66 0.60 15.26 16 16 O -0.56 -19.63 13.41 -3.10 -0.04 -19.67 16 17 C 0.09 2.86 3.15 44.17 0.14 3.00 16 18 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 19 N -0.82 -26.63 8.44 -171.82 -1.45 -28.08 16 20 C -0.08 -3.25 4.78 30.60 0.15 -3.10 16 21 C 0.04 2.02 4.86 29.85 0.15 2.17 16 22 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 23 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 24 C 0.00 0.11 5.46 84.66 0.46 0.57 16 25 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 26 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 0.87 8.08 -2.39 -0.02 0.85 16 32 H 0.07 0.89 6.97 -2.39 -0.02 0.88 16 33 H 0.15 1.95 7.19 -2.91 -0.02 1.93 16 34 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.11 1.07 6.86 -2.39 -0.02 1.05 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 1.41 7.23 -2.39 -0.02 1.39 16 41 H 0.05 0.79 7.53 -2.39 -0.02 0.78 16 42 H 0.13 2.84 5.81 -2.91 -0.02 2.82 16 43 H 0.12 4.03 5.78 -2.92 -0.02 4.02 16 44 H 0.42 8.28 7.39 -92.71 -0.68 7.59 16 45 H 0.35 9.68 9.06 -89.69 -0.81 8.87 16 46 H 0.35 11.58 8.58 -89.69 -0.77 10.82 16 47 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 50 H 0.01 0.40 7.75 -2.39 -0.02 0.39 16 51 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -72.17 404.05 -1.73 -73.90 By element: Atomic # 1 Polarization: 37.17 SS G_CDS: -1.29 Total: 35.87 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 5.19 Total: -15.30 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -5.99 Total: -113.08 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -1.65 Total: -27.68 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -72.17 -1.73 -73.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424137002.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.469 kcal (2) G-P(sol) polarization free energy of solvation -72.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds