Wall clock time and date at job start Wed Apr 1 2020 05:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38083 * 120.00055 * 2 1 4 4 C 1.38868 * 120.00114 * 180.23432 * 3 2 1 5 5 N 1.39889 * 120.00756 * 179.74556 * 4 3 2 6 6 C 1.47006 * 111.00027 * 303.65818 * 5 4 3 7 7 C 1.53099 * 109.25747 * 177.60813 * 6 5 4 8 8 O 1.43007 * 109.26061 * 56.84828 * 7 6 5 9 9 C 1.43019 * 113.73989 * 301.33045 * 8 7 6 10 10 C 1.47017 * 110.99980 * 180.02562 * 5 4 3 11 11 C 1.38914 * 119.98388 * 359.76765 * 4 3 2 12 12 C 1.38033 * 119.99932 * 0.02562 * 11 4 3 13 13 C 1.38835 * 120.00082 * 179.75189 * 2 1 3 14 14 N 1.40155 * 119.99272 * 0.02562 * 13 2 1 15 15 C 1.34777 * 119.99830 * 154.87533 * 14 13 2 16 16 O 1.21298 * 119.99893 * 354.49182 * 15 14 13 17 17 C 1.50703 * 119.99780 * 174.48002 * 15 14 13 18 18 H 1.08994 * 109.47124 * 320.00699 * 17 15 14 19 19 N 1.46898 * 109.46799 * 200.00668 * 17 15 14 20 20 C 1.53003 * 109.46815 * 80.00889 * 17 15 14 21 21 C 1.52999 * 109.46901 * 184.99863 * 20 17 15 22 22 C 1.50703 * 109.47151 * 179.97438 * 21 20 17 23 23 H 1.08001 * 119.99741 * 0.02562 * 22 21 20 24 24 C 1.37874 * 120.00082 * 179.97438 * 22 21 20 25 25 N 1.31514 * 119.99946 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99837 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47043 * 60.00978 * 26 24 22 28 28 H 1.48506 * 109.46723 * 180.02562 * 26 24 22 29 29 H 1.48492 * 109.47709 * 300.00584 * 26 24 22 30 30 H 1.08999 * 109.46588 * 270.24717 * 1 2 3 31 31 H 1.08997 * 109.47242 * 30.25128 * 1 2 3 32 32 H 1.09004 * 109.47077 * 150.25528 * 1 2 3 33 33 H 1.08003 * 119.99939 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.50819 * 297.54312 * 6 5 4 35 35 H 1.08998 * 109.51074 * 57.67433 * 6 5 4 36 36 H 1.09006 * 109.50720 * 296.91157 * 7 6 5 37 37 H 1.08998 * 109.54468 * 176.80491 * 7 6 5 38 38 H 1.08997 * 109.50572 * 298.73549 * 9 8 7 39 39 H 1.08998 * 109.54802 * 178.62313 * 9 8 7 40 40 H 1.08998 * 109.50244 * 302.33074 * 10 5 4 41 41 H 1.08995 * 109.50404 * 62.41495 * 10 5 4 42 42 H 1.08002 * 119.99645 * 180.02562 * 11 4 3 43 43 H 1.08004 * 119.99574 * 179.97438 * 12 11 4 44 44 H 0.97001 * 120.00086 * 334.88500 * 14 13 2 45 45 H 1.00899 * 110.99942 * 176.05149 * 19 17 15 46 46 H 1.00895 * 111.00109 * 300.00024 * 19 17 15 47 47 H 1.08994 * 109.47222 * 64.99443 * 20 17 15 48 48 H 1.09003 * 109.46860 * 304.99582 * 20 17 15 49 49 H 1.09005 * 109.47064 * 59.99866 * 21 20 17 50 50 H 1.08994 * 109.47049 * 300.00141 * 21 20 17 51 51 H 0.96998 * 119.99960 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1958 0.0000 4 6 3.5861 1.1958 -0.0049 5 7 4.2857 2.4072 -0.0103 6 6 3.8864 3.2411 -1.1532 7 6 4.6300 4.5778 -1.0873 8 8 6.0388 4.3331 -1.0616 9 6 6.4627 3.5244 0.0392 10 6 5.7377 2.1771 -0.0155 11 6 4.2804 -0.0074 -0.0050 12 6 3.5899 -1.2026 -0.0006 13 6 2.2012 -1.2023 0.0052 14 7 1.5003 -2.4160 0.0099 15 6 2.0786 -3.5301 -0.4809 16 8 3.1647 -3.4638 -1.0170 17 6 1.3761 -4.8581 -0.3633 18 1 0.8986 -4.9313 0.6138 19 7 2.3538 -5.9442 -0.5132 20 6 0.3148 -4.9724 -1.4595 21 6 -0.4821 -6.2639 -1.2651 22 6 -1.5278 -6.3762 -2.3444 23 1 -1.6151 -5.6038 -3.0942 24 6 -2.3725 -7.4655 -2.3752 25 7 -2.2660 -8.4063 -1.4625 26 14 -3.6692 -7.6042 -3.7126 27 1 -3.0085 -7.6250 -5.0424 28 1 -4.4426 -8.8579 -3.5240 29 1 -4.5877 -6.4401 -3.6344 30 1 -0.3632 0.0044 1.0277 31 1 -0.3633 0.8877 -0.5177 32 1 -0.3633 -0.8923 -0.5099 33 1 1.6574 2.1312 0.0004 34 1 4.1384 2.7299 -2.0824 35 1 2.8119 3.4202 -1.1154 36 1 4.3370 5.1131 -0.1840 37 1 4.3807 5.1773 -1.9627 38 1 6.2230 4.0290 0.9751 39 1 7.5387 3.3613 -0.0212 40 1 6.0145 1.5793 0.8529 41 1 6.0191 1.6482 -0.9261 42 1 5.3604 -0.0076 -0.0084 43 1 4.1297 -2.1380 -0.0011 44 1 0.5989 -2.4542 0.3663 45 1 1.9188 -6.8440 -0.3744 46 1 2.8104 -5.8982 -1.4117 47 1 0.8004 -4.9883 -2.4351 48 1 -0.3593 -4.1176 -1.4031 49 1 -0.9677 -6.2479 -0.2894 50 1 0.1919 -7.1186 -1.3214 51 1 -2.8605 -9.1724 -1.4839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424137008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:29 Heat of formation + Delta-G solvation = -50.783655 kcal Electronic energy + Delta-G solvation = -30221.676779 eV Core-core repulsion = 26120.627854 eV Total energy + Delta-G solvation = -4101.048925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.01941 -40.16517 -38.60969 -36.47912 -35.54084 -34.05268 -32.92587 -32.74143 -31.64342 -29.98070 -29.81212 -27.36045 -27.21845 -25.92216 -24.60479 -23.95575 -22.43112 -21.80163 -20.77954 -20.22541 -19.83524 -17.92029 -17.52339 -17.29231 -16.56578 -16.30400 -15.81959 -15.59093 -15.33396 -15.16103 -14.98595 -14.78064 -14.53149 -14.47654 -14.19930 -13.85174 -13.77629 -13.44067 -13.28039 -13.02713 -12.93872 -12.63503 -12.25475 -12.14177 -12.08206 -11.98553 -11.82094 -11.79016 -11.19247 -11.09909 -11.06890 -10.95908 -10.79963 -10.71938 -10.12265 -10.05323 -9.94226 -9.43632 -9.31027 -9.14221 -8.83378 -8.48361 -8.29160 -7.60186 -6.12772 -4.16275 1.15168 1.30322 2.71299 3.06080 3.25452 3.26237 3.30622 3.32872 3.43797 3.72928 4.35555 4.38997 4.47475 4.55380 4.69102 4.70939 4.77472 4.83953 4.88268 4.99502 5.07011 5.10956 5.16483 5.21652 5.23299 5.29763 5.34070 5.40534 5.44968 5.46771 5.49796 5.54772 5.64019 5.74150 5.88939 5.99967 6.04872 6.18227 6.32176 6.42168 6.44492 6.63922 6.68127 6.70965 6.79017 7.11112 7.31323 7.44950 7.51035 7.57106 7.81115 7.83903 8.23125 8.26534 8.89245 9.48856 10.97978 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020590 B = 0.001897 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.567971 B =14757.754544 C =15442.868984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 C -0.116 4.116 4 C 0.083 3.917 5 N -0.485 5.485 6 C 0.019 3.981 7 C 0.063 3.937 8 O -0.385 6.385 9 C 0.063 3.937 10 C 0.012 3.988 11 C -0.151 4.151 12 C -0.102 4.102 13 C 0.137 3.863 14 N -0.672 5.672 15 C 0.525 3.475 16 O -0.517 6.517 17 C 0.076 3.924 18 H 0.100 0.900 19 N -0.830 5.830 20 C -0.139 4.139 21 C 0.025 3.975 22 C -0.526 4.526 23 H 0.054 0.946 24 C 0.059 3.941 25 N -0.892 5.892 26 Si 0.893 3.107 27 H -0.277 1.277 28 H -0.286 1.286 29 H -0.277 1.277 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.127 0.873 43 H 0.149 0.851 44 H 0.412 0.588 45 H 0.357 0.643 46 H 0.346 0.654 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.019 0.981 50 H 0.018 0.982 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.207 24.009 5.710 27.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.099 4.099 3 C -0.137 4.137 4 C -0.014 4.014 5 N -0.202 5.202 6 C -0.107 4.107 7 C -0.014 4.014 8 O -0.303 6.303 9 C -0.014 4.014 10 C -0.115 4.115 11 C -0.172 4.172 12 C -0.123 4.123 13 C 0.042 3.958 14 N -0.317 5.317 15 C 0.313 3.687 16 O -0.391 6.391 17 C -0.039 4.039 18 H 0.118 0.882 19 N -0.362 5.362 20 C -0.178 4.178 21 C -0.012 4.012 22 C -0.564 4.564 23 H 0.072 0.928 24 C -0.143 4.143 25 N -0.531 5.531 26 Si 0.721 3.279 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.202 1.202 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.143 0.857 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.119 0.881 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.074 0.926 42 H 0.144 0.856 43 H 0.166 0.834 44 H 0.248 0.752 45 H 0.172 0.828 46 H 0.160 0.840 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.315 24.502 6.294 28.587 hybrid contribution -1.923 -1.040 -1.738 2.793 sum 11.392 23.461 4.555 26.476 Atomic orbital electron populations 1.20758 0.90680 1.03349 1.02563 1.19490 0.96053 0.91288 1.03042 1.20337 0.91884 0.97166 1.04316 1.18806 0.92816 0.88449 1.01378 1.59470 1.05422 1.14546 1.40761 1.22943 1.01484 0.94592 0.91697 1.22712 0.80752 0.95188 1.02781 1.88003 1.22986 1.70925 1.48421 1.22713 0.99068 0.89573 0.90040 1.22973 0.86992 0.98727 1.02832 1.21149 0.99917 0.91297 1.04805 1.21301 0.92529 0.99346 0.99138 1.17643 0.91434 0.84835 1.01916 1.43698 1.19108 1.07029 1.61848 1.21137 0.85725 0.85623 0.76204 1.90599 1.21039 1.86105 1.41369 1.21487 0.92279 0.88325 1.01827 0.88182 1.58744 1.31920 1.05828 1.39749 1.22414 0.96502 1.02396 0.96531 1.19100 0.94332 0.90292 0.97510 1.21124 1.16568 1.06368 1.12332 0.92766 1.25010 0.97559 0.95718 0.95998 1.69933 1.38653 1.10304 1.34206 0.86634 0.81596 0.77405 0.82250 1.20217 1.21189 1.20209 0.90863 0.91071 0.91278 0.85654 0.92928 0.88963 0.92075 0.88072 0.92092 0.88039 0.88795 0.92607 0.85563 0.83383 0.75153 0.82773 0.84045 0.92512 0.92538 0.96255 0.96328 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.44 36.01 0.34 -0.71 16 2 C -0.10 -1.08 5.89 -104.46 -0.62 -1.70 16 3 C -0.12 -1.24 8.85 -39.40 -0.35 -1.58 16 4 C 0.08 0.91 5.64 -83.70 -0.47 0.44 16 5 N -0.49 -4.55 4.78 -170.76 -0.82 -5.36 16 6 C 0.02 0.15 5.41 -3.71 -0.02 0.13 16 7 C 0.06 0.44 7.01 37.21 0.26 0.70 16 8 O -0.38 -3.44 10.83 -35.23 -0.38 -3.82 16 9 C 0.06 0.45 7.01 37.21 0.26 0.71 16 10 C 0.01 0.10 4.33 -3.71 -0.02 0.08 16 11 C -0.15 -1.80 8.81 -39.41 -0.35 -2.14 16 12 C -0.10 -1.43 8.71 -39.42 -0.34 -1.77 16 13 C 0.14 1.83 6.42 -83.60 -0.54 1.30 16 14 N -0.67 -8.90 4.97 -9.81 -0.05 -8.95 16 15 C 0.52 8.36 6.88 -10.98 -0.08 8.29 16 16 O -0.52 -9.51 13.41 5.54 0.07 -9.43 16 17 C 0.08 1.23 3.21 -68.86 -0.22 1.01 16 18 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 19 N -0.83 -13.64 8.94 -5.65 -0.05 -13.69 16 20 C -0.14 -2.61 4.78 -26.73 -0.13 -2.74 16 21 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 22 C -0.53 -14.13 9.11 -34.44 -0.31 -14.44 16 23 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 24 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 25 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 26 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.07 0.65 6.98 -51.93 -0.36 0.29 16 33 H 0.13 1.09 7.20 -52.48 -0.38 0.72 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.64 6.86 -51.93 -0.36 0.28 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.69 7.23 -51.93 -0.38 0.32 16 41 H 0.06 0.49 7.53 -51.93 -0.39 0.10 16 42 H 0.13 1.30 5.81 -52.49 -0.30 0.99 16 43 H 0.15 2.32 5.78 -52.48 -0.30 2.01 16 44 H 0.41 4.51 7.41 -40.82 -0.30 4.21 16 45 H 0.36 5.89 7.55 -39.29 -0.30 5.59 16 46 H 0.35 5.77 8.58 -39.29 -0.34 5.43 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 51 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -31.77 402.13 -10.21 -41.97 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.95 Total: 12.54 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.81 Total: -10.45 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.18 Total: -52.85 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.31 Total: -13.25 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.77 -10.21 -41.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424137008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.811 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds